Wall clock time and date at job start Wed Apr 1 2020 03:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47323 * 2 1 4 4 C 1.52998 * 109.46965 * 120.00048 * 2 1 3 5 5 H 1.09011 * 109.46953 * 184.99730 * 4 2 1 6 6 C 1.52999 * 109.47425 * 65.00306 * 4 2 1 7 7 C 1.53002 * 109.47468 * 175.00235 * 6 4 2 8 8 N 1.46493 * 109.47130 * 179.97438 * 7 6 4 9 9 C 1.46503 * 120.00182 * 269.99390 * 8 7 6 10 10 C 1.34782 * 120.00096 * 89.99763 * 8 7 6 11 11 O 1.21278 * 119.99761 * 359.97438 * 10 8 7 12 12 C 1.50702 * 119.99846 * 179.97438 * 10 8 7 13 13 H 1.09002 * 110.26294 * 59.29968 * 12 10 8 14 14 C 1.54338 * 110.37392 * 181.40782 * 12 10 8 15 15 C 1.54374 * 102.38548 * 145.32217 * 14 12 10 16 16 C 1.51221 * 105.12408 * 333.70700 * 15 14 12 17 17 C 1.38732 * 130.69880 * 197.14939 * 16 15 14 18 18 C 1.38578 * 118.55948 * 179.97438 * 17 16 15 19 19 C 1.38235 * 118.99173 * 0.02562 * 18 17 16 20 20 N 1.31687 * 120.79544 * 359.97438 * 19 18 17 21 21 C 1.32301 * 122.03333 * 0.02562 * 20 19 18 22 22 N 1.46499 * 109.47226 * 304.99896 * 4 2 1 23 23 C 1.36943 * 119.99844 * 275.00304 * 22 4 2 24 24 H 1.07997 * 119.99815 * 359.97438 * 23 22 4 25 25 C 1.38813 * 119.99721 * 179.97438 * 23 22 4 26 26 N 1.31615 * 119.99892 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99852 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46862 * 60.00200 * 27 25 23 29 29 H 1.48496 * 109.46905 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46895 * 300.00362 * 27 25 23 31 31 H 1.08995 * 109.46886 * 300.00017 * 1 2 3 32 32 H 1.09001 * 109.46807 * 60.00078 * 1 2 3 33 33 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46883 * 239.99657 * 2 1 3 35 35 H 1.09001 * 109.47115 * 299.99733 * 3 2 1 36 36 H 1.08994 * 109.46961 * 59.99630 * 3 2 1 37 37 H 1.09000 * 109.47219 * 180.02562 * 3 2 1 38 38 H 1.08995 * 109.47613 * 54.99687 * 6 4 2 39 39 H 1.09008 * 109.46536 * 294.99742 * 6 4 2 40 40 H 1.08995 * 109.47151 * 59.99169 * 7 6 4 41 41 H 1.08997 * 109.46538 * 299.99704 * 7 6 4 42 42 H 1.08992 * 109.47216 * 270.00467 * 9 8 7 43 43 H 1.09004 * 109.46676 * 30.00597 * 9 8 7 44 44 H 1.08997 * 109.47169 * 149.99725 * 9 8 7 45 45 H 1.08995 * 110.82114 * 263.54481 * 14 12 10 46 46 H 1.09001 * 110.82472 * 27.09938 * 14 12 10 47 47 H 1.09006 * 110.30777 * 214.79774 * 15 14 12 48 48 H 1.08999 * 110.39694 * 92.67056 * 15 14 12 49 49 H 1.08001 * 120.72144 * 359.95529 * 17 16 15 50 50 H 1.08000 * 120.51153 * 180.02562 * 18 17 16 51 51 H 1.07992 * 119.60340 * 180.02562 * 19 18 17 52 52 H 0.96996 * 120.00115 * 95.00136 * 22 4 2 53 53 H 0.97003 * 119.99875 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.6353 -2.1955 1.1880 7 6 2.2502 -2.9429 2.3730 8 7 1.8622 -4.3543 2.3146 9 6 0.6378 -4.8056 2.9807 10 6 2.6316 -5.2377 1.6481 11 8 3.6449 -4.8641 1.0964 12 6 2.2327 -6.6898 1.5886 13 1 1.2514 -6.7930 1.1253 14 6 3.2834 -7.5039 0.8042 15 6 3.2742 -8.8579 1.5458 16 6 2.8208 -8.5346 2.9517 17 6 2.9198 -9.2679 4.1252 18 6 2.4115 -8.7213 5.2928 19 6 1.8256 -7.4701 5.2473 20 7 1.7490 -6.8023 4.1148 21 6 2.2223 -7.2896 2.9795 22 7 1.4558 -0.1037 2.4424 23 6 2.0442 1.0003 2.9997 24 1 2.9389 1.4153 2.5598 25 6 1.4904 1.5857 4.1299 26 7 0.4002 1.0796 4.6661 27 14 2.2932 3.0912 4.8905 28 1 2.3239 4.1922 3.8946 29 1 1.5140 3.5201 6.0796 30 1 3.6804 2.7574 5.3024 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1301 1.4424 -0.0005 38 1 1.9949 -2.6326 0.2565 39 1 0.5491 -2.2761 1.2316 40 1 1.8906 -2.5057 3.3044 41 1 3.3363 -2.8622 2.3293 42 1 0.8685 -5.0999 4.0044 43 1 -0.0902 -3.9945 2.9910 44 1 0.2242 -5.6581 2.4419 45 1 2.9795 -7.6293 -0.2350 46 1 4.2647 -7.0338 0.8682 47 1 4.2758 -9.2879 1.5606 48 1 2.5747 -9.5461 1.0713 49 1 3.3826 -10.2437 4.1287 50 1 2.4720 -9.2646 6.2243 51 1 1.4266 -7.0346 6.1514 52 1 0.6524 -0.4766 2.8376 53 1 0.0134 1.4885 5.4561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506490595.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:09 Heat of formation + Delta-G solvation = -3.661619 kcal Electronic energy + Delta-G solvation = -31272.973385 eV Core-core repulsion = 27337.112398 eV Total energy + Delta-G solvation = -3935.860987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.14574 -40.48877 -38.99308 -37.17088 -36.47943 -34.74152 -33.87694 -32.73130 -31.31758 -30.29730 -29.36762 -28.08312 -27.64251 -26.52552 -25.08070 -24.43150 -23.42990 -22.67005 -21.90545 -20.28209 -19.85346 -19.16185 -18.31644 -17.87113 -17.53897 -17.02341 -16.56507 -16.19413 -15.90897 -15.88817 -15.70689 -15.21455 -15.10119 -14.71235 -14.57792 -14.44890 -14.25113 -14.08345 -13.92047 -13.78125 -13.50706 -13.05582 -12.96022 -12.92977 -12.87072 -12.73580 -12.71961 -12.54818 -12.48054 -12.39122 -12.11838 -12.07676 -11.97412 -11.80813 -11.72104 -11.27728 -11.16158 -10.95324 -10.80505 -10.62347 -10.23163 -9.66628 -9.37381 -8.85968 -7.84448 -5.08310 0.11656 0.35724 1.48554 1.49410 1.54855 1.58217 2.08156 2.61456 2.81814 2.95329 3.35552 3.48238 3.55332 3.87174 3.92497 3.95092 3.99630 4.11399 4.12369 4.20841 4.26122 4.32652 4.38540 4.44050 4.47286 4.50728 4.59453 4.64093 4.65583 4.73690 4.83221 4.84450 4.88896 4.95900 4.99518 5.04256 5.06676 5.10699 5.19333 5.22764 5.26485 5.27626 5.30494 5.35224 5.39865 5.43982 5.59873 5.61084 5.64485 5.81423 5.82960 6.37457 6.47843 7.01117 7.16832 7.44989 8.19959 8.46208 9.38666 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002783 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.432698 B =10059.019591 C =11370.528916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.181 3.819 5 H 0.031 0.969 6 C -0.114 4.114 7 C 0.132 3.868 8 N -0.598 5.598 9 C 0.080 3.920 10 C 0.513 3.487 11 O -0.583 6.583 12 C -0.055 4.055 13 H 0.136 0.864 14 C -0.102 4.102 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.068 4.068 18 C -0.163 4.163 19 C 0.081 3.919 20 N -0.493 5.493 21 C 0.095 3.905 22 N -0.719 5.719 23 C -0.213 4.213 24 H 0.070 0.930 25 C -0.073 4.073 26 N -0.966 5.966 27 Si 0.955 3.045 28 H -0.282 1.282 29 H -0.299 1.299 30 H -0.285 1.285 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.110 0.890 49 H 0.163 0.837 50 H 0.167 0.833 51 H 0.173 0.827 52 H 0.374 0.626 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -26.175 -5.398 26.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.072 3.928 5 H 0.049 0.951 6 C -0.153 4.153 7 C 0.009 3.991 8 N -0.328 5.328 9 C -0.063 4.063 10 C 0.301 3.699 11 O -0.464 6.464 12 C -0.076 4.076 13 H 0.153 0.847 14 C -0.141 4.141 15 C -0.107 4.107 16 C -0.150 4.150 17 C -0.094 4.094 18 C -0.182 4.182 19 C -0.075 4.075 20 N -0.202 5.202 21 C -0.042 4.042 22 N -0.359 5.359 23 C -0.345 4.345 24 H 0.088 0.912 25 C -0.265 4.265 26 N -0.618 5.618 27 Si 0.786 3.214 28 H -0.209 1.209 29 H -0.225 1.225 30 H -0.212 1.212 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.129 0.871 49 H 0.181 0.819 50 H 0.184 0.816 51 H 0.190 0.810 52 H 0.206 0.794 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.365 -25.012 -5.616 25.671 hybrid contribution 0.333 0.635 1.099 1.312 sum 1.698 -24.377 -4.517 24.850 Atomic orbital electron populations 1.21616 0.95303 1.00907 1.00648 1.21615 0.96415 0.96517 0.98132 1.21780 0.99616 0.96949 1.01248 1.20346 0.95248 0.90255 0.86949 0.95082 1.21949 1.00780 0.94802 0.97738 1.21200 0.99025 0.79725 0.99171 1.47891 1.25378 1.07782 1.51774 1.22307 0.84377 0.99291 1.00280 1.20845 0.82820 0.88624 0.77596 1.90646 1.27216 1.80724 1.47825 1.20960 1.03794 0.90262 0.92590 0.84701 1.22311 0.97981 0.93838 0.99928 1.21039 1.03496 0.97267 0.88926 1.21724 0.99593 0.95751 0.97929 1.21470 0.96667 1.00658 0.90569 1.22454 0.98600 0.96852 1.00324 1.23164 0.96286 0.92528 0.95571 1.67110 1.18138 1.36081 0.98897 1.21511 0.96410 0.93459 0.92816 1.42449 1.31269 1.32497 1.29706 1.19416 1.05967 1.03456 1.05672 0.91220 1.25280 0.98997 1.02346 0.99861 1.69773 1.23676 1.43836 1.24487 0.85481 0.77486 0.80823 0.77645 1.20873 1.22542 1.21203 0.94416 0.92817 0.92815 0.91346 0.92889 0.93063 0.94094 0.91682 0.91462 0.91374 0.93012 0.88793 0.92553 0.90593 0.87471 0.91408 0.88667 0.87148 0.81950 0.81577 0.81042 0.79356 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 8.74 71.98 0.63 -3.82 16 2 C -0.11 -3.82 2.74 -10.80 -0.03 -3.85 16 3 C -0.14 -5.21 8.46 71.98 0.61 -4.60 16 4 C 0.18 7.33 2.13 44.99 0.10 7.43 16 5 H 0.03 1.36 8.08 -2.38 -0.02 1.34 16 6 C -0.11 -4.04 4.71 30.59 0.14 -3.89 16 7 C 0.13 4.94 5.29 86.38 0.46 5.40 16 8 N -0.60 -19.07 2.87 -846.78 -2.43 -21.51 16 9 C 0.08 2.13 8.72 127.77 1.11 3.24 16 10 C 0.51 16.12 7.09 87.66 0.62 16.74 16 11 O -0.58 -22.44 15.09 -3.02 -0.05 -22.48 16 12 C -0.05 -1.20 2.37 -11.58 -0.03 -1.22 16 13 H 0.14 2.35 7.39 -2.39 -0.02 2.34 16 14 C -0.10 -1.80 6.34 31.51 0.20 -1.60 16 15 C -0.07 -0.85 6.77 30.48 0.21 -0.64 16 16 C -0.15 -2.48 6.16 -19.60 -0.12 -2.61 16 17 C -0.07 -0.88 10.17 22.47 0.23 -0.66 16 18 C -0.16 -2.13 10.12 22.35 0.23 -1.91 16 19 C 0.08 1.48 11.18 84.71 0.95 2.42 16 20 N -0.49 -11.60 6.26 -182.97 -1.15 -12.74 16 21 C 0.10 2.10 6.11 42.72 0.26 2.36 16 22 N -0.72 -34.89 3.54 -322.93 -1.14 -36.03 16 23 C -0.21 -11.52 7.75 84.03 0.65 -10.87 16 24 H 0.07 3.73 7.32 -2.91 -0.02 3.70 16 25 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 26 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 27 Si 0.95 46.80 29.55 68.60 2.03 48.82 16 28 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 29 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 30 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 31 H 0.04 1.57 7.47 -2.39 -0.02 1.55 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.71 6.68 -2.39 -0.02 1.69 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.05 2.28 5.99 -2.39 -0.01 2.27 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.32 6.81 -2.38 -0.02 2.31 16 40 H 0.07 2.85 7.68 -2.39 -0.02 2.83 16 41 H 0.05 2.17 7.42 -2.39 -0.02 2.15 16 42 H 0.09 2.62 5.63 -2.39 -0.01 2.61 16 43 H 0.06 1.54 8.07 -2.38 -0.02 1.52 16 44 H 0.08 1.68 6.19 -2.39 -0.01 1.66 16 45 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.58 7.05 -2.39 -0.02 1.56 16 47 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 50 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 51 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 52 H 0.37 19.50 7.80 -92.71 -0.72 18.77 16 53 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -70.95 409.25 4.40 -66.55 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.18 Total: 37.07 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 6.68 Total: -1.75 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -4.44 Total: -128.22 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -70.95 4.40 -66.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506490595.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.891 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds