Wall clock time and date at job start Wed Apr 1 2020 03:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47503 * 2 1 4 4 C 1.53004 * 109.47113 * 120.00202 * 2 1 3 5 5 H 1.08999 * 109.47260 * 185.00100 * 4 2 1 6 6 C 1.52996 * 109.46916 * 304.99824 * 4 2 1 7 7 C 1.53005 * 109.47287 * 185.00057 * 6 4 2 8 8 N 1.46497 * 109.47290 * 179.97438 * 7 6 4 9 9 C 1.46500 * 119.99791 * 90.00040 * 8 7 6 10 10 C 1.34777 * 120.00111 * 270.00013 * 8 7 6 11 11 O 1.21283 * 119.99672 * 5.40060 * 10 8 7 12 12 C 1.50699 * 120.00121 * 185.40587 * 10 8 7 13 13 H 1.09000 * 110.25924 * 34.59883 * 12 10 8 14 14 C 1.54331 * 110.29778 * 156.65602 * 12 10 8 15 15 C 1.54516 * 102.32464 * 145.21167 * 14 12 10 16 16 C 1.51221 * 105.16451 * 333.82984 * 15 14 12 17 17 C 1.38747 * 130.69401 * 197.08374 * 16 15 14 18 18 C 1.38576 * 118.55342 * 179.97438 * 17 16 15 19 19 C 1.38228 * 118.99631 * 359.97438 * 18 17 16 20 20 N 1.31686 * 120.79430 * 0.02562 * 19 18 17 21 21 C 1.32287 * 122.03444 * 0.02562 * 20 19 18 22 22 N 1.46497 * 109.47043 * 64.99687 * 4 2 1 23 23 C 1.36943 * 119.99861 * 85.00644 * 22 4 2 24 24 H 1.08004 * 120.00030 * 359.97438 * 23 22 4 25 25 C 1.38816 * 120.00004 * 179.97438 * 23 22 4 26 26 N 1.31622 * 119.99807 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99979 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46987 * 90.00175 * 27 25 23 29 29 H 1.48498 * 109.47257 * 210.00093 * 27 25 23 30 30 H 1.48503 * 109.47419 * 330.00344 * 27 25 23 31 31 H 1.08996 * 109.46993 * 299.99900 * 1 2 3 32 32 H 1.08996 * 109.47063 * 59.99793 * 1 2 3 33 33 H 1.08999 * 109.46915 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47055 * 239.99869 * 2 1 3 35 35 H 1.08990 * 109.47344 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46717 * 300.00465 * 3 2 1 37 37 H 1.09000 * 109.46554 * 60.00380 * 3 2 1 38 38 H 1.08994 * 109.47546 * 65.00093 * 6 4 2 39 39 H 1.09001 * 109.47674 * 304.99816 * 6 4 2 40 40 H 1.09007 * 109.46981 * 300.00262 * 7 6 4 41 41 H 1.09004 * 109.46836 * 59.99743 * 7 6 4 42 42 H 1.09007 * 109.46893 * 92.62391 * 9 8 7 43 43 H 1.08994 * 109.47249 * 212.61566 * 9 8 7 44 44 H 1.08991 * 109.47213 * 332.62207 * 9 8 7 45 45 H 1.08997 * 110.82331 * 263.50192 * 14 12 10 46 46 H 1.09006 * 110.82293 * 27.04848 * 14 12 10 47 47 H 1.08997 * 110.34984 * 214.86974 * 15 14 12 48 48 H 1.09005 * 110.31552 * 92.76590 * 15 14 12 49 49 H 1.07994 * 120.71901 * 359.93875 * 17 16 15 50 50 H 1.08003 * 120.50350 * 180.02562 * 18 17 16 51 51 H 1.07996 * 119.60138 * 180.02562 * 19 18 17 52 52 H 0.96999 * 120.00418 * 264.99414 * 22 4 2 53 53 H 0.96998 * 119.99724 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1263 -0.6444 1.2952 6 6 1.4300 -0.0763 2.4953 7 6 2.0343 -0.7144 3.7478 8 7 1.4506 -0.0963 4.9409 9 6 0.2370 -0.6592 5.5380 10 6 2.0301 0.9900 5.4891 11 8 2.9762 1.5144 4.9406 12 6 1.5027 1.5529 6.7837 13 1 1.1449 0.7489 7.4269 14 6 2.6016 2.3642 7.5019 15 6 1.7922 3.5016 8.1642 16 6 0.5575 3.6603 7.3057 17 6 -0.3562 4.7009 7.2186 18 6 -1.4135 4.5813 6.3309 19 6 -1.5201 3.4347 5.5663 20 7 -0.6339 2.4668 5.6753 21 6 0.3885 2.5425 6.5114 22 7 1.6524 -2.1329 1.1905 23 6 2.4346 -3.0301 0.5135 24 1 3.3370 -2.6970 0.0224 25 6 2.0676 -4.3677 0.4583 26 7 0.9675 -4.7735 1.0563 27 14 3.1341 -5.5915 -0.4659 28 1 4.1454 -6.1640 0.4587 29 1 2.2826 -6.6822 -1.0049 30 1 3.8224 -4.9012 -1.5862 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 0.3511 -0.2310 2.4933 39 1 1.6437 0.9925 2.4929 40 1 1.8206 -1.7833 3.7502 41 1 3.1133 -0.5597 3.7497 42 1 0.5117 -1.3726 6.3151 43 1 -0.3583 0.1425 5.9750 44 1 -0.3451 -1.1661 4.7686 45 1 3.1039 1.7555 8.2536 46 1 3.3180 2.7656 6.7850 47 1 2.3708 4.4253 8.1694 48 1 1.5131 3.2250 9.1810 49 1 -0.2459 5.5844 7.8298 50 1 -2.1428 5.3724 6.2373 51 1 -2.3401 3.3315 4.8710 52 1 0.8418 -2.4320 1.6314 53 1 0.7113 -5.7083 1.0180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506490599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:18 Heat of formation + Delta-G solvation = -15.398311 kcal Electronic energy + Delta-G solvation = -31403.950758 eV Core-core repulsion = 27467.580830 eV Total energy + Delta-G solvation = -3936.369928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.09594 -40.56019 -39.03259 -37.09261 -36.50747 -35.08404 -33.74861 -32.74780 -31.47319 -30.29440 -29.25829 -27.98541 -27.82268 -26.56443 -24.95631 -24.45392 -23.73631 -22.85874 -22.03531 -20.03188 -19.88992 -19.23152 -18.37384 -17.80924 -17.40255 -16.93018 -16.84207 -16.40409 -15.98765 -15.83482 -15.50289 -15.36256 -14.97722 -14.93133 -14.58031 -14.44488 -14.31885 -14.03934 -13.92667 -13.73499 -13.67096 -13.23712 -13.07412 -12.98359 -12.87637 -12.80814 -12.80100 -12.59159 -12.53613 -12.48727 -12.20700 -12.07867 -11.96391 -11.84418 -11.73036 -11.41129 -11.25701 -10.94284 -10.83892 -10.62601 -10.23779 -9.68608 -9.61028 -8.91365 -7.89530 -5.15484 0.11199 0.36274 1.47679 1.47997 1.54668 1.56184 2.03767 2.58539 2.81213 2.94297 3.39817 3.43118 3.54099 3.84734 3.90393 3.94047 3.98279 4.09889 4.10855 4.16003 4.22543 4.28728 4.33448 4.38995 4.46339 4.50151 4.56427 4.58280 4.65349 4.67778 4.72452 4.76347 4.83516 4.85484 4.92793 4.96378 4.98944 5.05217 5.06171 5.10561 5.18646 5.22496 5.26266 5.31075 5.33036 5.37442 5.53119 5.56582 5.59929 5.66227 5.78822 6.32869 6.42900 7.02684 7.14167 7.39785 8.14635 8.41215 9.33571 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.002751 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.134450 B =10176.517644 C =10808.833009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.185 3.815 5 H 0.031 0.969 6 C -0.111 4.111 7 C 0.130 3.870 8 N -0.603 5.603 9 C 0.077 3.923 10 C 0.520 3.480 11 O -0.580 6.580 12 C -0.057 4.057 13 H 0.130 0.870 14 C -0.107 4.107 15 C -0.069 4.069 16 C -0.147 4.147 17 C -0.069 4.069 18 C -0.162 4.162 19 C 0.084 3.916 20 N -0.502 5.502 21 C 0.098 3.902 22 N -0.723 5.723 23 C -0.230 4.230 24 H 0.067 0.933 25 C -0.070 4.070 26 N -0.965 5.965 27 Si 0.963 3.037 28 H -0.290 1.290 29 H -0.296 1.296 30 H -0.275 1.275 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.111 0.889 49 H 0.164 0.836 50 H 0.169 0.831 51 H 0.172 0.828 52 H 0.374 0.626 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 21.431 17.936 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.131 4.131 3 C -0.193 4.193 4 C 0.075 3.925 5 H 0.049 0.951 6 C -0.150 4.150 7 C 0.007 3.993 8 N -0.333 5.333 9 C -0.065 4.065 10 C 0.309 3.691 11 O -0.461 6.461 12 C -0.079 4.079 13 H 0.148 0.852 14 C -0.145 4.145 15 C -0.106 4.106 16 C -0.149 4.149 17 C -0.094 4.094 18 C -0.182 4.182 19 C -0.073 4.073 20 N -0.211 5.211 21 C -0.039 4.039 22 N -0.363 5.363 23 C -0.362 4.362 24 H 0.085 0.915 25 C -0.263 4.263 26 N -0.616 5.616 27 Si 0.793 3.207 28 H -0.217 1.217 29 H -0.223 1.223 30 H -0.200 1.200 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.129 0.871 49 H 0.182 0.818 50 H 0.186 0.814 51 H 0.189 0.811 52 H 0.207 0.793 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.722 20.856 17.029 27.336 hybrid contribution 0.166 -0.741 -0.462 0.889 sum -4.555 20.115 16.567 26.454 Atomic orbital electron populations 1.21621 0.95161 1.00555 1.01032 1.21637 0.96548 0.95844 0.99081 1.21777 1.00475 0.95384 1.01631 1.20312 0.95972 0.83694 0.92484 0.95102 1.21935 1.00140 0.99155 0.93726 1.21272 0.97313 0.96883 0.83869 1.47909 1.27986 1.29020 1.28421 1.21974 0.85744 0.99729 0.99101 1.20810 0.82116 0.79358 0.86801 1.90640 1.30739 1.59950 1.64734 1.20974 0.94463 0.98208 0.94236 0.85225 1.22416 0.95859 0.96708 0.99566 1.21043 0.91445 0.99604 0.98531 1.21748 0.98976 0.95013 0.99205 1.21480 0.92317 0.98250 0.97385 1.22467 0.99528 0.99623 0.96540 1.23068 0.96611 0.89461 0.98201 1.66768 1.03191 1.32163 1.18982 1.21368 0.93527 0.95194 0.93808 1.42493 1.27886 1.02790 1.63174 1.19515 1.03232 0.89256 1.24219 0.91459 1.25367 0.99246 0.98714 1.02949 1.69791 1.26217 1.15311 1.50288 0.85290 0.77867 0.79089 0.78435 1.21697 1.22321 1.20034 0.92633 0.92599 0.94640 0.93620 0.93328 0.91840 0.92909 0.91933 0.92069 0.90834 0.92457 0.91157 0.89328 0.91297 0.87290 0.91127 0.88565 0.87112 0.81806 0.81365 0.81102 0.79349 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.60 71.98 0.62 -3.90 16 2 C -0.11 -4.18 2.88 -10.79 -0.03 -4.21 16 3 C -0.13 -4.27 8.96 71.98 0.64 -3.62 16 4 C 0.18 7.76 2.06 44.99 0.09 7.85 16 5 H 0.03 1.39 8.08 -2.39 -0.02 1.37 16 6 C -0.11 -4.13 4.28 30.59 0.13 -4.00 16 7 C 0.13 4.83 5.24 86.38 0.45 5.29 16 8 N -0.60 -18.94 2.87 -846.75 -2.43 -21.38 16 9 C 0.08 1.94 9.73 127.77 1.24 3.18 16 10 C 0.52 16.39 6.83 87.66 0.60 16.99 16 11 O -0.58 -22.57 15.26 -3.04 -0.05 -22.62 16 12 C -0.06 -1.27 2.34 -11.58 -0.03 -1.30 16 13 H 0.13 2.31 7.23 -2.39 -0.02 2.29 16 14 C -0.11 -1.89 6.52 31.56 0.21 -1.68 16 15 C -0.07 -0.85 6.77 30.53 0.21 -0.64 16 16 C -0.15 -2.54 6.16 -19.59 -0.12 -2.66 16 17 C -0.07 -0.90 10.17 22.47 0.23 -0.67 16 18 C -0.16 -2.13 10.12 22.35 0.23 -1.90 16 19 C 0.08 1.55 11.18 84.71 0.95 2.50 16 20 N -0.50 -12.34 9.09 -182.98 -1.66 -14.00 16 21 C 0.10 2.25 6.14 42.72 0.26 2.51 16 22 N -0.72 -36.33 4.03 -322.93 -1.30 -37.63 16 23 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16 24 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 25 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 26 N -0.96 -58.52 13.06 21.65 0.28 -58.24 16 27 Si 0.96 46.96 29.55 68.60 2.03 48.99 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 30 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 31 H 0.05 1.84 6.46 -2.39 -0.02 1.83 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.45 7.75 -2.39 -0.02 1.44 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.65 6.46 -2.39 -0.02 1.63 16 38 H 0.06 2.34 6.65 -2.39 -0.02 2.32 16 39 H 0.06 2.32 6.34 -2.39 -0.02 2.31 16 40 H 0.07 2.98 7.68 -2.38 -0.02 2.96 16 41 H 0.06 2.33 7.50 -2.39 -0.02 2.31 16 42 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.09 2.07 5.29 -2.39 -0.01 2.06 16 44 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 45 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.64 6.91 -2.38 -0.02 1.63 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.11 0.82 8.14 -2.38 -0.02 0.81 16 49 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 50 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 51 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 52 H 0.37 19.98 7.80 -92.71 -0.72 19.25 16 53 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -73.26 416.23 4.03 -69.23 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.18 Total: 37.52 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.98 Total: -1.88 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -5.11 Total: -131.24 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -73.26 4.03 -69.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506490599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.835 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds