Wall clock time and date at job start Wed Apr 1 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47174 * 119.99636 * 2 1 3 5 5 O 1.21280 * 120.00225 * 263.88017 * 4 2 1 6 6 N 1.34777 * 120.00100 * 83.60640 * 4 2 1 7 7 C 1.46502 * 120.00486 * 175.31300 * 6 4 2 8 8 C 1.52997 * 109.47289 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47462 * 64.99881 * 8 7 6 10 10 N 1.46506 * 109.47071 * 304.99559 * 8 7 6 11 11 C 1.36937 * 120.00114 * 304.90576 * 10 8 7 12 12 H 1.07999 * 119.99726 * 4.95311 * 11 10 8 13 13 C 1.38814 * 119.99869 * 184.95248 * 11 10 8 14 14 N 1.31610 * 119.99769 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99753 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46999 * 59.99950 * 15 13 11 17 17 H 1.48495 * 109.46837 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46880 * 299.99729 * 15 13 11 19 19 C 1.50697 * 109.47041 * 184.99959 * 8 7 6 20 20 C 1.38232 * 119.99960 * 330.40864 * 19 8 7 21 21 C 1.38244 * 120.00077 * 179.79005 * 20 19 8 22 22 C 1.38234 * 119.99713 * 0.43965 * 21 20 19 23 23 C 1.38235 * 120.00098 * 359.81437 * 22 21 20 24 24 C 1.38238 * 120.00002 * 150.67946 * 19 8 7 25 25 N 1.46898 * 109.47486 * 239.99664 * 2 1 3 26 26 C 1.48534 * 110.99714 * 66.46657 * 25 2 1 27 27 C 1.54936 * 103.22697 * 159.72277 * 26 25 2 28 28 C 1.54591 * 102.92265 * 322.58782 * 27 26 25 29 29 C 1.47901 * 111.00211 * 183.86285 * 25 2 1 30 30 H 1.09005 * 109.47410 * 304.75957 * 1 2 3 31 31 H 1.08999 * 109.47263 * 64.76175 * 1 2 3 32 32 H 1.09001 * 109.47005 * 184.76319 * 1 2 3 33 33 H 1.08991 * 109.47557 * 186.43190 * 3 2 1 34 34 H 1.09002 * 109.46652 * 306.42957 * 3 2 1 35 35 H 1.08998 * 109.47405 * 66.42546 * 3 2 1 36 36 H 0.97002 * 119.99616 * 355.30735 * 6 4 2 37 37 H 1.09006 * 109.46829 * 299.99960 * 7 6 4 38 38 H 1.09004 * 109.46974 * 59.99509 * 7 6 4 39 39 H 0.96999 * 119.99399 * 124.90321 * 10 8 7 40 40 H 0.97010 * 119.99993 * 179.97438 * 14 13 11 41 41 H 1.08003 * 120.00408 * 359.97438 * 20 19 8 42 42 H 1.07994 * 120.00148 * 180.27294 * 21 20 19 43 43 H 1.08000 * 120.00191 * 179.83496 * 22 21 20 44 44 H 1.07994 * 120.00136 * 180.02562 * 23 22 21 45 45 H 1.08000 * 120.00048 * 359.97438 * 24 19 8 46 46 H 1.09002 * 110.66747 * 278.15557 * 26 25 2 47 47 H 1.09003 * 110.66820 * 41.28965 * 26 25 2 48 48 H 1.09005 * 110.72460 * 204.22631 * 27 26 25 49 49 H 1.09002 * 110.72740 * 80.94714 * 27 26 25 50 50 H 1.09005 * 110.30496 * 263.04433 * 28 27 26 51 51 H 1.08998 * 110.39422 * 140.91601 * 28 27 26 52 52 H 1.08995 * 109.91510 * 333.50719 * 29 25 2 53 53 H 1.08996 * 109.91454 * 94.60840 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3400 -0.0731 2.2154 6 7 2.1344 -2.0542 1.2384 7 6 2.7184 -2.7378 2.3950 8 6 2.7153 -4.2480 2.1501 9 1 3.3742 -4.4819 1.3140 10 7 1.3537 -4.6891 1.8371 11 6 0.3281 -4.4101 2.7004 12 1 0.5070 -3.7969 3.5713 13 6 -0.9416 -4.9154 2.4563 14 7 -1.1594 -5.6630 1.3953 15 14 -2.3405 -4.5353 3.6344 16 1 -2.5458 -3.0661 3.7015 17 1 -3.5844 -5.1880 3.1528 18 1 -2.0032 -5.0502 4.9858 19 6 3.2016 -4.9585 3.3869 20 6 4.1009 -4.3366 4.2326 21 6 4.5437 -4.9867 5.3695 22 6 4.0941 -6.2621 5.6558 23 6 3.1987 -6.8860 4.8072 24 6 2.7526 -6.2343 3.6727 25 7 2.0197 -0.6925 -1.1993 26 6 1.6751 0.0652 -2.4295 27 6 2.6759 -0.4847 -3.4766 28 6 3.9668 -0.6840 -2.6498 29 6 3.4952 -0.7933 -1.1879 30 1 -0.3634 0.5859 0.8443 31 1 -0.3634 0.4382 -0.9295 32 1 -0.3633 -1.0241 0.0853 33 1 3.1238 1.4447 -0.1151 34 1 1.5857 1.9884 -0.8269 35 1 1.7736 1.9221 0.9419 36 1 1.8210 -2.5688 0.4781 37 1 3.7429 -2.3950 2.5405 38 1 2.1303 -2.5131 3.2849 39 1 1.1788 -5.1788 1.0182 40 1 -2.0466 -6.0165 1.2248 41 1 4.4554 -3.3417 4.0068 42 1 5.2430 -4.4991 6.0326 43 1 4.4420 -6.7711 6.5425 44 1 2.8471 -7.8823 5.0311 45 1 2.0529 -6.7217 3.0099 46 1 0.6487 -0.1405 -2.7332 47 1 1.8257 1.1341 -2.2778 48 1 2.8368 0.2405 -4.2744 49 1 2.3270 -1.4345 -3.8820 50 1 4.6294 0.1731 -2.7704 51 1 4.4745 -1.5996 -2.9530 52 1 3.9184 0.0206 -0.5993 53 1 3.7986 -1.7521 -0.7675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567660450.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:17 Heat of formation + Delta-G solvation = -2.474402 kcal Electronic energy + Delta-G solvation = -32057.039896 eV Core-core repulsion = 28121.230391 eV Total energy + Delta-G solvation = -3935.809505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.67150 -40.32465 -39.29688 -37.43174 -35.24655 -35.07226 -33.54923 -31.79221 -31.05713 -30.30706 -29.77080 -28.89059 -28.10086 -26.33502 -24.75850 -23.63850 -22.99776 -22.17090 -21.57008 -21.28999 -20.05887 -19.27034 -18.39618 -17.71271 -16.98354 -16.88613 -16.70937 -16.44006 -16.06817 -15.74287 -15.69207 -15.43348 -15.10274 -14.93161 -14.75499 -14.33286 -14.25044 -14.09809 -13.89762 -13.59610 -13.45845 -13.32799 -13.14598 -13.01259 -12.96342 -12.85327 -12.62123 -12.55358 -12.47413 -12.28336 -12.08265 -12.03947 -11.91790 -11.89015 -11.81094 -11.51234 -11.27757 -10.97832 -10.69087 -9.85524 -9.65061 -9.46959 -9.36697 -8.98523 -7.89980 -5.17040 0.61084 0.68858 1.42883 1.44438 1.49176 1.64997 2.35084 2.56614 2.89953 3.04265 3.42598 3.57230 3.74607 3.86601 3.92799 4.00761 4.03123 4.06191 4.13333 4.22205 4.27774 4.34633 4.37524 4.41307 4.52407 4.59442 4.59796 4.64864 4.66065 4.73529 4.78341 4.83661 4.88138 4.92891 4.96620 5.03726 5.11237 5.12030 5.14896 5.21389 5.26529 5.30960 5.33484 5.38462 5.56818 5.60864 5.72754 5.78138 5.91151 5.96071 5.98371 6.28226 6.32529 6.73940 7.34509 7.40814 8.06001 8.34692 9.31459 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.003983 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.266436 B = 7028.395257 C = 8450.514212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 C -0.161 4.161 4 C 0.518 3.482 5 O -0.594 6.594 6 N -0.686 5.686 7 C 0.126 3.874 8 C 0.202 3.798 9 H 0.092 0.908 10 N -0.712 5.712 11 C -0.203 4.203 12 H 0.054 0.946 13 C -0.055 4.055 14 N -0.955 5.955 15 Si 0.941 3.059 16 H -0.290 1.290 17 H -0.294 1.294 18 H -0.288 1.288 19 C -0.095 4.095 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.099 4.099 25 N -0.511 5.511 26 C 0.026 3.974 27 C -0.117 4.117 28 C -0.123 4.123 29 C 0.024 3.976 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.380 0.620 40 H 0.248 0.752 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.042 0.958 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.249 9.042 -7.215 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.003 4.003 3 C -0.220 4.220 4 C 0.304 3.696 5 O -0.475 6.475 6 N -0.335 5.335 7 C 0.000 4.000 8 C 0.092 3.908 9 H 0.110 0.890 10 N -0.350 5.350 11 C -0.335 4.335 12 H 0.072 0.928 13 C -0.248 4.248 14 N -0.606 5.606 15 Si 0.773 3.227 16 H -0.217 1.217 17 H -0.220 1.220 18 H -0.215 1.215 19 C -0.098 4.098 20 C -0.151 4.151 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.117 4.117 25 N -0.237 5.237 26 C -0.101 4.101 27 C -0.154 4.154 28 C -0.161 4.161 29 C -0.104 4.104 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.213 0.787 40 H 0.057 0.943 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.144 0.856 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.060 0.940 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.113 8.973 -6.379 16.368 hybrid contribution -1.208 0.213 0.540 1.340 sum 10.905 9.186 -5.839 15.407 Atomic orbital electron populations 1.21750 0.91307 1.02468 1.03378 1.21265 0.97308 0.93208 0.88525 1.22237 1.01598 0.94707 1.03421 1.20799 0.76870 0.82676 0.89228 1.90622 1.52701 1.67256 1.36935 1.45746 1.60777 1.06131 1.20799 1.21621 0.96713 0.93356 0.88330 1.19465 0.86819 0.90239 0.94249 0.89013 1.42318 1.01786 1.66684 1.24236 1.18948 0.88546 1.22986 1.03036 0.92834 1.25096 0.99238 1.01152 0.99278 1.69728 1.21480 1.40281 1.29063 0.85707 0.80519 0.77110 0.79381 1.21727 1.21982 1.21486 1.20661 0.96310 0.94849 0.97981 1.21279 0.98189 1.00195 0.95440 1.21371 1.00753 0.95353 0.97255 1.21361 0.97876 0.95691 0.99942 1.21356 0.98550 1.00634 0.95147 1.21003 0.98002 0.95127 0.97576 1.64994 1.11055 1.46587 1.01089 1.23473 1.00798 0.97017 0.88823 1.22458 0.93874 1.01939 0.97178 1.22349 0.98145 1.02921 0.92668 1.23007 0.87662 1.01137 0.98578 0.92415 0.88916 0.93181 0.92065 0.89027 0.92257 0.75040 0.91187 0.94851 0.78670 0.94255 0.85436 0.83917 0.83958 0.85576 0.87863 0.89565 0.91652 0.89064 0.91103 0.90388 0.90529 0.93982 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 8.53 71.98 0.61 -3.05 16 2 C 0.09 2.50 0.61 2.78 0.00 2.50 16 3 C -0.16 -3.84 7.29 71.98 0.52 -3.31 16 4 C 0.52 18.55 5.66 87.66 0.50 19.04 16 5 O -0.59 -25.07 15.95 -3.03 -0.05 -25.12 16 6 N -0.69 -24.47 4.63 -463.05 -2.14 -26.61 16 7 C 0.13 4.63 3.97 86.38 0.34 4.97 16 8 C 0.20 7.42 3.26 44.24 0.14 7.56 16 9 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 10 N -0.71 -31.91 3.76 -326.50 -1.23 -33.14 16 11 C -0.20 -10.56 8.56 84.03 0.72 -9.84 16 12 H 0.05 2.94 6.88 -2.91 -0.02 2.92 16 13 C -0.05 -3.01 5.50 84.86 0.47 -2.54 16 14 N -0.95 -54.99 13.06 21.65 0.28 -54.70 16 15 Si 0.94 46.56 29.55 68.60 2.03 48.58 16 16 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 17 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 19 C -0.10 -3.46 5.21 -19.87 -0.10 -3.57 16 20 C -0.13 -4.18 9.14 22.27 0.20 -3.98 16 21 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 22 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 23 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 24 C -0.10 -3.78 8.93 22.27 0.20 -3.58 16 25 N -0.51 -12.26 4.46 -837.90 -3.74 -15.99 16 26 C 0.03 0.46 5.46 86.65 0.47 0.93 16 27 C -0.12 -1.74 7.06 31.80 0.22 -1.52 16 28 C -0.12 -1.98 6.93 31.47 0.22 -1.76 16 29 C 0.02 0.53 5.35 86.45 0.46 0.99 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.09 2.01 6.91 -2.39 -0.02 2.00 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.44 6.01 -2.39 -0.01 1.43 16 34 H 0.09 1.66 6.33 -2.39 -0.02 1.64 16 35 H 0.06 1.62 7.63 -2.39 -0.02 1.60 16 36 H 0.41 14.85 7.63 -92.71 -0.71 14.15 16 37 H 0.07 2.32 6.82 -2.38 -0.02 2.31 16 38 H 0.03 1.46 7.13 -2.39 -0.02 1.45 16 39 H 0.38 18.27 8.04 -92.71 -0.75 17.53 16 40 H 0.25 14.22 8.31 -92.70 -0.77 13.44 16 41 H 0.13 3.65 6.28 -2.91 -0.02 3.63 16 42 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 45 H 0.10 4.52 7.42 -2.91 -0.02 4.50 16 46 H 0.09 1.53 7.59 -2.39 -0.02 1.51 16 47 H 0.07 1.03 5.56 -2.39 -0.01 1.01 16 48 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.04 0.99 5.60 -2.39 -0.01 0.98 16 53 H 0.07 1.70 7.76 -2.39 -0.02 1.68 16 Total: -1.00 -64.48 407.40 0.28 -64.20 By element: Atomic # 1 Polarization: 51.56 SS G_CDS: -0.53 Total: 51.03 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.66 Total: -8.24 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -6.83 Total: -130.45 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -64.48 0.28 -64.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567660450.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.722 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds