Wall clock time and date at job start Wed Apr 1 2020 04:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 H 1.09005 * 109.90893 * 305.99321 * 3 2 1 5 5 C 1.53995 * 109.91839 * 184.88796 * 3 2 1 6 6 H 1.08998 * 110.30913 * 358.24071 * 5 3 2 7 7 C 1.50706 * 110.30730 * 120.30788 * 5 3 2 8 8 O 1.21279 * 120.00074 * 358.61461 * 7 5 3 9 9 N 1.34772 * 119.99882 * 178.60889 * 7 5 3 10 10 C 1.46497 * 120.00064 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.38230 * 120.00198 * 90.00380 * 11 10 9 13 13 C 1.38234 * 120.00429 * 179.97438 * 12 11 10 14 14 C 1.38241 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.50691 * 119.99872 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47473 * 89.99442 * 15 14 13 17 17 C 1.36935 * 120.00292 * 179.97438 * 16 15 14 18 18 H 1.07993 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99980 * 179.72815 * 17 16 15 20 20 N 1.31619 * 120.00364 * 0.27484 * 19 17 16 21 21 Si 1.86800 * 120.00063 * 180.27754 * 19 17 16 22 22 H 1.48502 * 109.47430 * 89.99788 * 21 19 17 23 23 H 1.48508 * 109.47122 * 209.99736 * 21 19 17 24 24 H 1.48497 * 109.47125 * 329.99677 * 21 19 17 25 25 C 1.38234 * 119.99847 * 0.26971 * 14 13 12 26 26 C 1.38236 * 119.99868 * 269.97893 * 11 10 9 27 27 C 1.54599 * 105.22803 * 239.26982 * 5 3 2 28 28 C 1.55196 * 102.79887 * 338.01825 * 27 5 3 29 29 N 1.47903 * 110.08577 * 67.19816 * 3 2 1 30 30 C 1.46900 * 111.00449 * 265.29455 * 29 3 2 31 31 H 1.09001 * 109.47181 * 292.86596 * 1 2 3 32 32 H 1.09006 * 109.46686 * 52.86157 * 1 2 3 33 33 H 1.09003 * 109.47133 * 172.85967 * 1 2 3 34 34 H 1.08999 * 109.47298 * 239.99507 * 2 1 3 35 35 H 1.09005 * 109.47013 * 119.99876 * 2 1 3 36 36 H 0.96999 * 120.00083 * 0.02562 * 9 7 5 37 37 H 1.09002 * 109.47241 * 60.00646 * 10 9 7 38 38 H 1.08998 * 109.47483 * 300.00450 * 10 9 7 39 39 H 1.08006 * 120.00141 * 359.97438 * 12 11 10 40 40 H 1.08002 * 120.00553 * 179.97438 * 13 12 11 41 41 H 1.09003 * 109.47277 * 329.99559 * 15 14 13 42 42 H 1.09002 * 109.47514 * 209.99572 * 15 14 13 43 43 H 0.97000 * 120.00002 * 0.02562 * 16 15 14 44 44 H 0.97000 * 120.00519 * 180.02562 * 20 19 17 45 45 H 1.07999 * 119.99768 * 179.73399 * 25 14 13 46 46 H 1.08000 * 120.00380 * 0.02562 * 26 11 10 47 47 H 1.09003 * 110.72049 * 96.35077 * 27 5 3 48 48 H 1.08996 * 110.72484 * 219.63371 * 27 5 3 49 49 H 1.08997 * 110.68330 * 278.97677 * 28 27 5 50 50 H 1.09005 * 110.63731 * 155.86275 * 28 27 5 51 51 H 1.08997 * 109.47176 * 65.77441 * 30 29 3 52 52 H 1.08992 * 109.47502 * 185.78362 * 30 29 3 53 53 H 1.09006 * 109.46350 * 305.78210 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9932 -0.8292 5 6 3.5749 1.4562 -0.1234 6 1 3.9613 0.4374 -0.1521 7 6 3.9935 2.2084 -1.3603 8 8 3.1531 2.6736 -2.1007 9 7 5.3019 2.3644 -1.6437 10 6 5.7088 3.0952 -2.8464 11 6 7.2132 3.1259 -2.9307 12 6 7.8890 2.1192 -3.5945 13 6 9.2688 2.1476 -3.6723 14 6 9.9729 3.1831 -3.0867 15 6 11.4771 3.2144 -3.1720 16 7 11.8829 3.9448 -4.3753 17 6 13.2120 4.1036 -4.6642 18 1 13.9610 3.6909 -4.0047 19 6 13.5965 4.7908 -5.8073 20 7 12.6836 5.2944 -6.6108 21 14 15.4094 5.0009 -6.2055 22 1 15.8690 3.8598 -7.0374 23 1 15.6086 6.2693 -6.9517 24 1 16.1919 5.0406 -4.9441 25 6 9.2974 4.1872 -2.4185 26 6 7.9172 4.1611 -2.3446 27 6 4.0777 2.1853 1.1438 28 6 2.8375 3.0096 1.5810 29 7 1.7018 2.1008 1.2805 30 6 0.4429 2.8498 1.1711 31 1 -0.3633 0.3993 0.9469 32 1 -0.3633 0.6205 -0.8193 33 1 -0.3633 -1.0197 -0.1277 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 5.9741 1.9921 -1.0517 37 1 5.3264 4.1148 -2.7989 38 1 5.3060 2.5968 -3.7282 39 1 7.3389 1.3103 -4.0524 40 1 9.7969 1.3608 -4.1906 41 1 11.8596 2.1948 -3.2195 42 1 11.8807 3.7131 -2.2908 43 1 11.2102 4.3165 -4.9670 44 1 12.9523 5.7743 -7.4098 45 1 9.8478 4.9939 -1.9573 46 1 7.3893 4.9477 -1.8260 47 1 4.3569 1.4684 1.9160 48 1 4.9142 2.8418 0.9048 49 1 2.7604 3.9274 0.9982 50 1 2.8805 3.2322 2.6472 51 1 -0.3804 2.1546 1.0068 52 1 0.2701 3.4066 2.0920 53 1 0.5049 3.5440 0.3330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568118142.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:55 Heat of formation + Delta-G solvation = -24.716175 kcal Electronic energy + Delta-G solvation = -29375.873858 eV Core-core repulsion = 25439.099877 eV Total energy + Delta-G solvation = -3936.773981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.60898 -40.47545 -39.22200 -36.94631 -35.81307 -34.24037 -33.87112 -33.31374 -31.85919 -31.70816 -29.18206 -28.50247 -26.99159 -25.84471 -24.25524 -23.67354 -23.63390 -22.94994 -21.70914 -21.45897 -20.74621 -19.33587 -18.48211 -17.30131 -17.01818 -16.97556 -16.60931 -16.53665 -16.26225 -15.93545 -15.64645 -15.62031 -15.25258 -14.98214 -14.65374 -14.34817 -14.32203 -14.23893 -14.06030 -13.93413 -13.71192 -13.46400 -13.29157 -13.12818 -13.09568 -12.98556 -12.77168 -12.50116 -12.41366 -12.19785 -12.13009 -11.96602 -11.91869 -11.77160 -11.73125 -11.62757 -11.42301 -10.99171 -10.91246 -10.17846 -9.82671 -9.64484 -9.45126 -9.04123 -7.96603 -5.27011 0.23571 0.49855 1.47350 1.49209 1.55284 1.57818 2.13148 2.54836 2.85904 3.05330 3.36736 3.46120 3.61754 3.62827 3.79475 3.88405 4.03908 4.12624 4.12859 4.18535 4.23903 4.26814 4.32245 4.41250 4.42546 4.54592 4.55819 4.56878 4.65363 4.68787 4.70343 4.75770 4.88776 4.89123 4.89378 4.96758 4.97935 5.06554 5.11230 5.12756 5.15685 5.19211 5.30203 5.35416 5.45148 5.47059 5.47784 5.58793 5.80834 5.88254 6.04579 6.05420 6.24002 6.49148 7.16862 7.30788 8.03904 8.28737 9.26604 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.001579 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.950903 B =17730.300091 C =17902.793320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.070 3.930 4 H 0.051 0.949 5 C -0.116 4.116 6 H 0.130 0.870 7 C 0.518 3.482 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.172 3.828 11 C -0.109 4.109 12 C -0.098 4.098 13 C -0.115 4.115 14 C -0.087 4.087 15 C 0.185 3.815 16 N -0.739 5.739 17 C -0.250 4.250 18 H 0.079 0.921 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.267 1.267 25 C -0.115 4.115 26 C -0.098 4.098 27 C -0.107 4.107 28 C 0.028 3.972 29 N -0.514 5.514 30 C 0.010 3.990 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.122 0.878 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.122 0.878 46 H 0.141 0.859 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.029 0.971 50 H 0.099 0.901 51 H 0.081 0.919 52 H 0.078 0.922 53 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.170 -10.570 19.774 32.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.038 4.038 4 H 0.069 0.931 5 C -0.138 4.138 6 H 0.148 0.852 7 C 0.305 3.695 8 O -0.463 6.463 9 N -0.361 5.361 10 C 0.048 3.952 11 C -0.110 4.110 12 C -0.116 4.116 13 C -0.134 4.134 14 C -0.087 4.087 15 C 0.059 3.941 16 N -0.382 5.382 17 C -0.381 4.381 18 H 0.097 0.903 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.192 1.192 25 C -0.134 4.134 26 C -0.116 4.116 27 C -0.145 4.145 28 C -0.100 4.100 29 N -0.238 5.238 30 C -0.139 4.139 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.140 0.860 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.140 0.860 46 H 0.159 0.841 47 H 0.125 0.875 48 H 0.102 0.898 49 H 0.047 0.953 50 H 0.117 0.883 51 H 0.100 0.900 52 H 0.097 0.903 53 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -24.653 -10.636 19.705 33.304 hybrid contribution 1.253 1.134 -1.495 2.256 sum -23.401 -9.503 18.210 31.136 Atomic orbital electron populations 1.21830 0.95629 1.01745 1.01545 1.21492 0.96474 0.93927 1.02290 1.22454 0.92774 0.97158 0.91455 0.93064 1.22259 0.97016 1.01878 0.92607 0.85177 1.20960 0.82055 0.79339 0.87123 1.90679 1.52066 1.51292 1.52262 1.45974 1.07172 1.56526 1.26446 1.20025 0.89529 0.97345 0.88269 1.19763 0.94463 0.96089 1.00642 1.21186 0.93409 0.98671 0.98346 1.21177 0.94719 0.98497 0.98997 1.20170 0.95486 0.95526 0.97530 1.19775 0.89591 0.95272 0.89452 1.42538 1.04229 1.65644 1.25776 1.19683 0.84961 1.28226 1.05223 0.90305 1.25612 1.01926 1.01341 0.97792 1.69836 1.33652 1.42987 1.15507 0.85096 0.79735 0.76656 0.77980 1.21310 1.22225 1.19216 1.21174 0.94896 0.97872 0.99422 1.21179 0.93213 0.98264 0.98937 1.22599 0.97207 0.99308 0.95385 1.23378 0.90485 0.94054 1.02047 1.64765 1.02680 1.27135 1.29177 1.22702 0.92855 0.97583 1.00745 0.91812 0.94069 0.92008 0.91779 0.90285 0.74815 0.91117 0.90989 0.84092 0.86026 0.95120 0.95110 0.79537 0.93982 0.86003 0.84130 0.87483 0.89815 0.95266 0.88253 0.90041 0.90339 0.96811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.79 71.98 0.63 -1.24 16 2 C -0.10 -1.35 5.39 30.59 0.16 -1.18 16 3 C 0.07 1.12 2.20 45.06 0.10 1.22 16 4 H 0.05 1.16 5.91 -2.38 -0.01 1.15 16 5 C -0.12 -1.52 3.01 -10.66 -0.03 -1.56 16 6 H 0.13 1.17 7.69 -2.39 -0.02 1.16 16 7 C 0.52 9.85 7.08 87.66 0.62 10.47 16 8 O -0.58 -16.31 15.24 -3.03 -0.05 -16.36 16 9 N -0.71 -11.15 5.27 -466.79 -2.46 -13.61 16 10 C 0.17 3.32 5.80 85.63 0.50 3.82 16 11 C -0.11 -2.35 5.25 -19.87 -0.10 -2.46 16 12 C -0.10 -2.29 9.70 22.27 0.22 -2.07 16 13 C -0.12 -3.37 9.70 22.27 0.22 -3.16 16 14 C -0.09 -2.87 5.25 -19.87 -0.10 -2.97 16 15 C 0.18 7.42 6.38 85.63 0.55 7.97 16 16 N -0.74 -38.03 5.59 -347.20 -1.94 -39.97 16 17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 21 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C -0.12 -3.35 9.70 22.27 0.22 -3.14 16 26 C -0.10 -2.27 9.70 22.27 0.22 -2.06 16 27 C -0.11 -1.06 6.61 31.89 0.21 -0.85 16 28 C 0.03 0.36 6.57 86.74 0.57 0.93 16 29 N -0.51 -7.50 5.08 -883.54 -4.49 -11.99 16 30 C 0.01 0.14 9.09 127.69 1.16 1.30 16 31 H 0.06 0.77 6.22 -2.39 -0.01 0.76 16 32 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.41 4.67 8.41 -92.71 -0.78 3.89 16 37 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 38 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 41 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 42 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 43 H 0.37 20.74 7.66 -92.71 -0.71 20.03 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 46 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 47 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.08 0.75 7.59 -2.39 -0.02 0.74 16 49 H 0.03 0.48 8.02 -2.39 -0.02 0.46 16 50 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.08 1.03 5.40 -2.39 -0.01 1.02 16 52 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.01 0.23 7.93 -2.38 -0.02 0.21 16 Total: -1.00 -70.72 423.37 -0.78 -71.50 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.59 Total: 33.89 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 6.43 Total: -11.92 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -8.61 Total: -125.12 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.05 Total: -16.36 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -70.72 -0.78 -71.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568118142.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.780 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds