Wall clock time and date at job start Wed Apr 1 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47064 * 2 1 4 4 C 1.52993 * 109.47142 * 240.00149 * 2 1 3 5 5 C 1.50697 * 109.46900 * 119.99763 * 2 1 3 6 6 C 1.38623 * 120.32421 * 60.00485 * 5 2 1 7 7 C 1.38584 * 118.48834 * 180.02562 * 6 5 2 8 8 C 1.39305 * 119.06202 * 0.02562 * 7 6 5 9 9 C 1.48165 * 119.72757 * 179.97438 * 8 7 6 10 10 O 1.21517 * 119.99818 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00241 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00160 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.66986 * 31.75695 * 12 11 9 14 14 C 1.54894 * 110.75400 * 268.33084 * 12 11 9 15 15 C 1.54264 * 104.19153 * 203.74125 * 14 12 11 16 16 C 1.53875 * 106.60265 * 23.60776 * 15 14 12 17 17 C 1.54272 * 106.59829 * 0.02562 * 16 15 14 18 18 H 1.08998 * 110.59999 * 95.11903 * 17 16 15 19 19 C 1.52991 * 110.48608 * 217.71647 * 17 16 15 20 20 N 1.46513 * 109.46761 * 289.76940 * 19 17 16 21 21 C 1.36935 * 119.99805 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00003 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00059 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00361 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99634 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47394 * 90.00083 * 25 23 21 27 27 H 1.48506 * 109.47093 * 209.99990 * 25 23 21 28 28 H 1.48497 * 109.47522 * 329.99893 * 25 23 21 29 29 N 1.32714 * 120.55155 * 359.97438 * 8 7 6 30 30 C 1.31526 * 121.64369 * 0.02562 * 29 8 7 31 31 H 1.08996 * 109.46844 * 300.00137 * 1 2 3 32 32 H 1.09000 * 109.47047 * 60.00044 * 1 2 3 33 33 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47278 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46866 * 299.99886 * 3 2 1 36 36 H 1.08998 * 109.47218 * 59.99455 * 3 2 1 37 37 H 1.09008 * 109.47007 * 299.99929 * 4 2 1 38 38 H 1.08994 * 109.47530 * 59.99563 * 4 2 1 39 39 H 1.09001 * 109.47240 * 180.02562 * 4 2 1 40 40 H 1.07997 * 120.75584 * 359.97438 * 6 5 2 41 41 H 1.07999 * 120.47403 * 180.02562 * 7 6 5 42 42 H 0.96995 * 120.00169 * 359.97438 * 11 9 8 43 43 H 1.09003 * 110.48560 * 322.41578 * 14 12 11 44 44 H 1.08997 * 110.48971 * 85.06073 * 14 12 11 45 45 H 1.09000 * 110.03381 * 264.31751 * 15 14 12 46 46 H 1.09004 * 110.07029 * 142.91200 * 15 14 12 47 47 H 1.08997 * 110.03718 * 240.71416 * 16 15 14 48 48 H 1.09005 * 110.07404 * 119.30337 * 16 15 14 49 49 H 1.08999 * 109.47960 * 49.76453 * 19 17 16 50 50 H 1.08997 * 109.47614 * 169.77520 * 19 17 16 51 51 H 0.96995 * 119.99624 * 0.02562 * 20 19 17 52 52 H 0.96996 * 119.99968 * 180.02562 * 24 23 21 53 53 H 1.07997 * 119.54951 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7016 -2.0374 1.4565 7 6 2.1837 -2.6532 2.6006 8 6 2.9791 -1.9210 3.4792 9 6 3.5020 -2.5645 4.7071 10 8 3.2369 -3.7265 4.9441 11 7 4.2716 -1.8612 5.5611 12 6 4.7882 -2.4974 6.7756 13 1 4.9673 -3.5593 6.6073 14 6 3.8177 -2.2819 7.9634 15 6 4.7106 -2.4286 9.2128 16 6 6.1492 -2.1174 8.7640 17 6 6.0802 -1.7917 7.2577 18 1 6.0090 -0.7154 7.1009 19 6 7.3018 -2.3578 6.5310 20 7 8.4938 -1.5970 6.9141 21 6 9.7140 -1.9242 6.3857 22 1 9.7975 -2.7428 5.6862 23 6 10.8433 -1.2031 6.7482 24 7 12.0162 -1.5180 6.2407 25 14 10.6987 0.2132 7.9575 26 1 10.8839 -0.2956 9.3404 27 1 11.7419 1.2272 7.6594 28 1 9.3554 0.8341 7.8344 29 7 3.2725 -0.6518 3.2255 30 6 2.8283 -0.0431 2.1475 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 1.0816 -2.5789 0.7574 41 1 1.9462 -3.6861 2.8082 42 1 4.4836 -0.9338 5.3718 43 1 3.3801 -1.2844 7.9223 44 1 3.0370 -3.0424 7.9610 45 1 4.6513 -3.4471 9.5966 46 1 4.3980 -1.7215 9.9811 47 1 6.7881 -2.9847 8.9300 48 1 6.5352 -1.2590 9.3139 49 1 7.4351 -3.4043 6.8051 50 1 7.1521 -2.2805 5.4541 51 1 8.4187 -0.8616 7.5421 52 1 12.8054 -1.0143 6.4944 53 1 3.0876 0.9910 1.9747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568523688.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:33 Heat of formation + Delta-G solvation = -34.090609 kcal Electronic energy + Delta-G solvation = -30099.035980 eV Core-core repulsion = 26161.855493 eV Total energy + Delta-G solvation = -3937.180487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.91858 -40.75948 -39.24179 -37.74972 -36.48017 -34.87422 -33.59137 -33.33269 -31.72033 -30.61243 -28.76726 -28.44527 -28.10368 -26.44361 -25.47226 -24.23677 -23.70278 -22.30538 -21.64774 -20.88353 -20.35811 -19.86022 -18.93897 -18.06790 -17.28758 -16.64979 -16.56439 -16.32085 -16.13588 -16.02635 -15.50524 -15.40096 -15.26379 -14.95553 -14.74771 -14.67420 -14.45966 -14.26227 -14.15179 -13.86614 -13.73594 -13.43726 -13.22562 -13.13809 -12.88935 -12.87008 -12.53850 -12.29507 -12.19641 -12.09879 -12.09154 -11.92628 -11.87633 -11.74144 -11.71271 -11.66232 -11.36144 -11.27443 -10.99655 -10.86937 -10.50780 -10.21790 -9.93400 -9.33248 -8.04559 -5.39058 -0.42724 0.20272 1.36735 1.41691 1.48961 1.63229 2.02458 2.47520 2.79089 3.06014 3.26257 3.32573 3.53410 3.61907 3.66459 3.79270 3.85879 3.91324 3.95795 4.06852 4.07853 4.25132 4.36902 4.41926 4.43433 4.47506 4.47966 4.60268 4.68541 4.70006 4.77776 4.79978 4.89893 4.91255 4.94278 4.96999 4.99576 5.04682 5.11109 5.11307 5.16279 5.18067 5.22246 5.26073 5.32058 5.43294 5.46470 5.47017 5.52372 5.58376 5.72047 6.18869 6.35271 6.74697 7.05411 7.08285 7.79659 8.02517 9.17274 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010724 B = 0.002484 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.325497 B =11271.213076 C =12892.619107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.152 4.152 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.075 4.075 7 C -0.114 4.114 8 C 0.047 3.953 9 C 0.568 3.432 10 O -0.569 6.569 11 N -0.693 5.693 12 C 0.146 3.854 13 H 0.080 0.920 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.096 4.096 18 H 0.089 0.911 19 C 0.166 3.834 20 N -0.752 5.752 21 C -0.239 4.239 22 H 0.048 0.952 23 C -0.065 4.065 24 N -0.985 5.985 25 Si 0.961 3.039 26 H -0.275 1.275 27 H -0.295 1.295 28 H -0.248 1.248 29 N -0.471 5.471 30 C 0.087 3.913 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.169 0.831 41 H 0.147 0.853 42 H 0.415 0.585 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.019 0.981 50 H 0.011 0.989 51 H 0.369 0.631 52 H 0.259 0.741 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.838 6.044 -9.926 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 C -0.209 4.209 4 C -0.198 4.198 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.135 4.135 8 C -0.090 4.090 9 C 0.354 3.646 10 O -0.448 6.448 11 N -0.343 5.343 12 C 0.041 3.959 13 H 0.099 0.901 14 C -0.161 4.161 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.116 4.116 18 H 0.107 0.893 19 C 0.040 3.960 20 N -0.397 5.397 21 C -0.370 4.370 22 H 0.066 0.934 23 C -0.256 4.256 24 N -0.635 5.635 25 Si 0.787 3.213 26 H -0.201 1.201 27 H -0.221 1.221 28 H -0.172 1.172 29 N -0.182 5.182 30 C -0.073 4.073 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.186 0.814 41 H 0.165 0.835 42 H 0.252 0.748 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.037 0.963 50 H 0.029 0.971 51 H 0.202 0.798 52 H 0.068 0.932 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -30.338 5.518 -9.235 32.189 hybrid contribution 0.560 0.344 -0.175 0.680 sum -29.777 5.862 -9.410 31.774 Atomic orbital electron populations 1.21909 0.92138 1.02748 1.02742 1.19576 0.96691 0.95427 0.90844 1.22034 1.01400 0.94164 1.03263 1.21931 1.00909 1.00675 0.96302 1.21403 0.95958 0.94670 0.97264 1.21740 0.97935 0.94347 0.96048 1.22222 0.95485 1.01794 0.93949 1.20991 1.00029 0.91663 0.96300 1.18235 0.78364 0.85324 0.82709 1.90739 1.60371 1.17397 1.76315 1.45816 1.49902 1.16294 1.22258 1.22017 0.92727 0.97346 0.83794 0.90141 1.22642 0.97458 1.02624 0.93351 1.22041 0.92984 1.02734 0.97187 1.22119 0.97875 1.02056 0.93335 1.22349 0.92291 1.00556 0.96376 0.89299 1.20738 0.85292 0.94016 0.95974 1.42598 1.03842 1.38905 1.54399 1.19004 0.85495 1.12383 1.20141 0.93361 1.25583 0.94617 1.02792 1.02638 1.69902 0.99267 1.44749 1.49629 0.85331 0.78144 0.78962 0.78893 1.20051 1.22123 1.17218 1.67522 1.20496 1.09048 1.21115 1.23277 0.94071 1.01257 0.88697 0.92764 0.90585 0.91861 0.92271 0.90603 0.91706 0.91857 0.90501 0.93307 0.81397 0.83500 0.74756 0.90193 0.91312 0.91010 0.89643 0.92237 0.90900 0.96296 0.97127 0.79757 0.93230 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.29 71.98 0.60 -0.34 16 2 C -0.02 -0.22 0.86 -52.93 -0.05 -0.27 16 3 C -0.15 -1.19 7.14 71.98 0.51 -0.67 16 4 C -0.14 -1.17 8.29 71.98 0.60 -0.58 16 5 C -0.09 -1.30 4.77 -19.70 -0.09 -1.39 16 6 C -0.08 -1.12 8.84 22.44 0.20 -0.92 16 7 C -0.11 -2.40 9.63 22.61 0.22 -2.18 16 8 C 0.05 1.23 6.75 41.91 0.28 1.51 16 9 C 0.57 17.20 7.81 86.88 0.68 17.88 16 10 O -0.57 -20.08 15.97 -3.77 -0.06 -20.14 16 11 N -0.69 -19.34 5.17 -438.93 -2.27 -21.61 16 12 C 0.15 4.10 2.69 46.29 0.12 4.22 16 13 H 0.08 2.61 7.46 -2.39 -0.02 2.59 16 14 C -0.12 -2.74 6.51 31.67 0.21 -2.53 16 15 C -0.11 -2.31 6.80 31.32 0.21 -2.10 16 16 C -0.12 -3.09 6.23 31.32 0.19 -2.89 16 17 C -0.10 -2.90 2.51 -9.71 -0.02 -2.93 16 18 H 0.09 2.55 8.02 -2.39 -0.02 2.53 16 19 C 0.17 6.77 5.59 86.37 0.48 7.26 16 20 N -0.75 -36.34 5.30 -343.45 -1.82 -38.15 16 21 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 22 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 24 N -0.99 -64.69 13.97 21.65 0.30 -64.39 16 25 Si 0.96 45.86 27.74 68.60 1.90 47.76 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 29 N -0.47 -11.29 9.54 -184.92 -1.76 -13.05 16 30 C 0.09 1.56 10.15 84.81 0.86 2.43 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.38 7.45 -2.39 -0.02 0.36 16 34 H 0.06 0.53 7.53 -2.39 -0.02 0.51 16 35 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.06 0.48 7.52 -2.39 -0.02 0.47 16 37 H 0.06 0.47 7.45 -2.38 -0.02 0.45 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.17 1.45 7.24 -2.91 -0.02 1.43 16 41 H 0.15 3.04 7.64 -2.91 -0.02 3.02 16 42 H 0.42 10.81 7.90 -92.71 -0.73 10.08 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.06 1.78 7.71 -2.39 -0.02 1.76 16 48 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.02 0.81 7.95 -2.39 -0.02 0.80 16 50 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.37 16.58 5.49 -92.71 -0.51 16.07 16 52 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 53 H 0.18 2.46 5.90 -2.91 -0.02 2.44 16 Total: -1.00 -76.16 418.44 2.25 -73.91 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: -0.39 Total: 36.03 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 6.35 Total: -0.36 kcal Atomic # 7 Polarization: -131.65 SS G_CDS: -5.55 Total: -137.20 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -76.16 2.25 -73.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568523688.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.819 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds