Wall clock time and date at job start Wed Apr 1 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 C 1.52996 * 109.47509 * 239.99590 * 2 1 3 5 5 C 1.50709 * 109.46885 * 119.99517 * 2 1 3 6 6 C 1.38629 * 120.32006 * 60.00414 * 5 2 1 7 7 C 1.38586 * 118.48483 * 179.97438 * 6 5 2 8 8 C 1.39310 * 119.06288 * 0.02562 * 7 6 5 9 9 C 1.48161 * 119.72661 * 179.97438 * 8 7 6 10 10 O 1.21513 * 119.99976 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00385 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00387 * 179.97438 * 11 9 8 13 13 H 1.09005 * 110.53997 * 327.61369 * 12 11 9 14 14 C 1.54895 * 110.48545 * 90.22264 * 12 11 9 15 15 C 1.54895 * 102.74750 * 156.62296 * 14 12 11 16 16 C 1.54263 * 104.19227 * 322.05725 * 15 14 12 17 17 C 1.53872 * 106.60314 * 23.61561 * 16 15 14 18 18 H 1.09003 * 110.02881 * 240.66732 * 17 16 15 19 19 C 1.52993 * 110.03732 * 119.28342 * 17 16 15 20 20 N 1.46496 * 109.47551 * 66.45028 * 19 17 16 21 21 C 1.36934 * 120.00548 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99288 * 0.02562 * 21 20 19 23 23 C 1.38805 * 120.00389 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00257 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 270.00277 * 25 23 21 27 27 H 1.48501 * 109.47062 * 30.00228 * 25 23 21 28 28 H 1.48499 * 109.46981 * 150.00382 * 25 23 21 29 29 N 1.32715 * 120.55122 * 0.25194 * 8 7 6 30 30 C 1.31527 * 121.64336 * 359.47504 * 29 8 7 31 31 H 1.09002 * 109.47437 * 300.00340 * 1 2 3 32 32 H 1.09007 * 109.47241 * 60.00312 * 1 2 3 33 33 H 1.09004 * 109.47449 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47379 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46665 * 299.99839 * 3 2 1 36 36 H 1.09002 * 109.47173 * 59.99498 * 3 2 1 37 37 H 1.09004 * 109.47046 * 300.00591 * 4 2 1 38 38 H 1.08998 * 109.46954 * 59.99832 * 4 2 1 39 39 H 1.09003 * 109.47569 * 180.02562 * 4 2 1 40 40 H 1.08002 * 120.75677 * 359.95316 * 6 5 2 41 41 H 1.08000 * 120.46980 * 180.02562 * 7 6 5 42 42 H 0.97000 * 119.99547 * 359.97438 * 11 9 8 43 43 H 1.08998 * 110.75470 * 38.30601 * 14 12 11 44 44 H 1.08997 * 110.75891 * 274.93446 * 14 12 11 45 45 H 1.08995 * 110.48637 * 203.38067 * 15 14 12 46 46 H 1.08997 * 110.48650 * 80.73660 * 15 14 12 47 47 H 1.08997 * 110.03547 * 264.32035 * 16 15 14 48 48 H 1.09002 * 110.07042 * 142.91745 * 16 15 14 49 49 H 1.09004 * 109.46862 * 306.45226 * 19 17 16 50 50 H 1.09004 * 109.46998 * 186.45704 * 19 17 16 51 51 H 0.96999 * 119.99694 * 0.02562 * 20 19 17 52 52 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 53 53 H 1.07997 * 119.54826 * 180.26610 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.7014 -2.0375 1.4566 7 6 2.1845 -2.6535 2.6002 8 6 2.9808 -1.9216 3.4783 9 6 3.5046 -2.5655 4.7056 10 8 3.2387 -3.7271 4.9430 11 7 4.2759 -1.8628 5.5586 12 6 4.7933 -2.4992 6.7724 13 1 4.0882 -3.2424 7.1449 14 6 6.1719 -3.1498 6.4978 15 6 6.8099 -3.2070 7.9081 16 6 6.3661 -1.8900 8.5777 17 6 5.0839 -1.4400 7.8557 18 1 5.2383 -0.4650 7.3935 19 6 3.9206 -1.3715 8.8471 20 7 4.1694 -0.3038 9.8188 21 6 3.2579 -0.0536 10.8096 22 1 2.3557 -0.6438 10.8748 23 6 3.4934 0.9583 11.7301 24 7 2.6174 1.1984 12.6827 25 14 5.0542 1.9785 11.6176 26 1 6.1242 1.3366 12.4227 27 1 5.4869 2.0666 10.1998 28 1 4.7922 3.3433 12.1410 29 7 3.2696 -0.6508 3.2273 30 6 2.8288 -0.0433 2.1473 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9562 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6766 -1.7490 -1.2491 38 1 1.6767 -0.2076 -2.1391 39 1 3.1300 -0.7217 -1.2489 40 1 1.0811 -2.5789 0.7576 41 1 1.9469 -3.6864 2.8078 42 1 4.4884 -0.9356 5.3688 43 1 6.7667 -2.5271 5.8297 44 1 6.0511 -4.1524 6.0877 45 1 7.8965 -3.2498 7.8339 46 1 6.4305 -4.0643 8.4640 47 1 7.1429 -1.1337 8.4654 48 1 6.1597 -2.0587 9.6346 49 1 3.8314 -2.3243 9.3690 50 1 2.9959 -1.1643 8.3084 51 1 4.9795 0.2264 9.7600 52 1 2.7822 1.9054 13.3261 53 1 3.0881 0.9908 1.9745 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568523689.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:38 Heat of formation + Delta-G solvation = -33.097258 kcal Electronic energy + Delta-G solvation = -30051.763000 eV Core-core repulsion = 26114.625588 eV Total energy + Delta-G solvation = -3937.137412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.92353 -40.78348 -39.27839 -37.75078 -36.47799 -34.86234 -33.57172 -33.33141 -31.71995 -30.58968 -28.76593 -28.44345 -28.10401 -26.45942 -25.46450 -24.23658 -23.75846 -22.30961 -21.58117 -20.94685 -20.35821 -19.87736 -18.88843 -18.06480 -17.26518 -16.66848 -16.56544 -16.32499 -16.11490 -16.03056 -15.59026 -15.46851 -15.26526 -14.92844 -14.73160 -14.68085 -14.46403 -14.23445 -14.13059 -13.79145 -13.72918 -13.48592 -13.18505 -13.12310 -12.88947 -12.86258 -12.53664 -12.31525 -12.18655 -12.09355 -11.99402 -11.92537 -11.87417 -11.77723 -11.74391 -11.70622 -11.37222 -11.29330 -10.99582 -10.87024 -10.51144 -10.22288 -9.93686 -9.33557 -8.04661 -5.39263 -0.42918 0.20089 1.36584 1.41564 1.48804 1.63274 2.01987 2.47351 2.78970 3.05982 3.26127 3.32623 3.53303 3.62984 3.66210 3.79156 3.85865 3.91174 3.96188 4.06725 4.07883 4.25078 4.35807 4.42718 4.43445 4.46568 4.49124 4.59464 4.69902 4.71491 4.77912 4.79984 4.90008 4.91267 4.94585 4.96953 4.99298 5.04734 5.10849 5.11404 5.12777 5.17322 5.23680 5.29700 5.32146 5.43231 5.44491 5.47155 5.53349 5.58425 5.72050 6.18724 6.35088 6.74523 7.05219 7.08450 7.79393 8.02248 9.17098 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.002375 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.953254 B =11786.160824 C =13170.669986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 C -0.151 4.151 4 C -0.139 4.139 5 C -0.091 4.091 6 C -0.075 4.075 7 C -0.114 4.114 8 C 0.048 3.952 9 C 0.567 3.433 10 O -0.569 6.569 11 N -0.694 5.694 12 C 0.147 3.853 13 H 0.077 0.923 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.118 4.118 17 C -0.096 4.096 18 H 0.085 0.915 19 C 0.165 3.835 20 N -0.751 5.751 21 C -0.239 4.239 22 H 0.049 0.951 23 C -0.065 4.065 24 N -0.985 5.985 25 Si 0.960 3.040 26 H -0.274 1.274 27 H -0.248 1.248 28 H -0.295 1.295 29 N -0.470 5.470 30 C 0.087 3.913 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.168 0.832 41 H 0.146 0.854 42 H 0.416 0.584 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.021 0.979 50 H 0.009 0.991 51 H 0.369 0.631 52 H 0.259 0.741 53 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -3.985 -34.028 34.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.208 4.208 4 C -0.196 4.196 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.135 4.135 8 C -0.089 4.089 9 C 0.353 3.647 10 O -0.448 6.448 11 N -0.343 5.343 12 C 0.042 3.958 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.115 4.115 18 H 0.103 0.897 19 C 0.039 3.961 20 N -0.397 5.397 21 C -0.370 4.370 22 H 0.067 0.933 23 C -0.257 4.257 24 N -0.635 5.635 25 Si 0.786 3.214 26 H -0.200 1.200 27 H -0.173 1.173 28 H -0.221 1.221 29 N -0.181 5.181 30 C -0.073 4.073 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.253 0.747 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.077 0.923 49 H 0.039 0.961 50 H 0.027 0.973 51 H 0.203 0.797 52 H 0.068 0.932 53 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.461 -4.417 -33.087 33.678 hybrid contribution -0.239 0.607 0.256 0.700 sum 4.222 -3.810 -32.832 33.321 Atomic orbital electron populations 1.21932 0.92630 1.02677 1.02582 1.19576 0.96336 0.95542 0.91080 1.22033 1.01652 0.94073 1.03084 1.21912 1.01128 1.00550 0.95980 1.21407 0.95861 0.94604 0.97410 1.21740 0.97814 0.94417 0.96113 1.22222 0.95404 1.01909 0.93949 1.20976 1.00235 0.91573 0.96143 1.18249 0.77998 0.85438 0.83017 1.90743 1.60447 1.17621 1.76039 1.45880 1.50133 1.16315 1.21993 1.21870 0.96240 0.94409 0.83312 0.90468 1.22788 0.94219 1.00868 0.98097 1.22274 1.01399 0.96894 0.94485 1.22167 0.95566 0.98375 0.99526 1.22114 0.95501 0.99189 0.94725 0.89653 1.20782 0.95618 0.90345 0.89369 1.42603 1.23510 1.40313 1.33308 1.19006 1.00183 1.13389 1.04456 0.93312 1.25586 1.02125 1.00710 0.97230 1.69906 1.38507 1.35507 1.19600 0.85333 0.79360 0.77657 0.79002 1.19972 1.17273 1.22133 1.67522 1.21188 1.08761 1.20645 1.23286 0.94250 1.01214 0.88504 0.93254 0.90518 0.91905 0.91692 0.90625 0.92199 0.91910 0.90595 0.92758 0.81453 0.83577 0.74701 0.89888 0.91312 0.89194 0.91565 0.90212 0.92290 0.96064 0.97327 0.79735 0.93231 0.79972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.29 71.98 0.60 -0.50 16 2 C -0.02 -0.21 0.86 -52.93 -0.05 -0.25 16 3 C -0.15 -1.07 7.14 71.98 0.51 -0.56 16 4 C -0.14 -0.88 8.29 71.98 0.60 -0.29 16 5 C -0.09 -1.24 4.77 -19.69 -0.09 -1.33 16 6 C -0.08 -1.09 8.84 22.45 0.20 -0.89 16 7 C -0.11 -2.36 9.63 22.61 0.22 -2.15 16 8 C 0.05 1.21 6.75 41.91 0.28 1.49 16 9 C 0.57 16.98 7.81 86.88 0.68 17.66 16 10 O -0.57 -20.07 15.97 -3.75 -0.06 -20.13 16 11 N -0.69 -19.02 5.15 -440.01 -2.26 -21.28 16 12 C 0.15 4.13 2.75 46.07 0.13 4.26 16 13 H 0.08 2.55 7.27 -2.38 -0.02 2.53 16 14 C -0.12 -2.75 6.58 31.89 0.21 -2.54 16 15 C -0.11 -2.44 6.83 31.67 0.22 -2.23 16 16 C -0.12 -3.16 6.13 31.32 0.19 -2.97 16 17 C -0.10 -2.90 2.71 -10.07 -0.03 -2.93 16 18 H 0.09 2.46 7.73 -2.39 -0.02 2.44 16 19 C 0.17 6.76 5.29 86.38 0.46 7.21 16 20 N -0.75 -36.36 5.14 -343.47 -1.77 -38.13 16 21 C -0.24 -14.27 10.47 84.03 0.88 -13.39 16 22 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.98 -64.69 13.97 21.65 0.30 -64.39 16 25 Si 0.96 45.89 27.74 68.60 1.90 47.79 16 26 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 29 N -0.47 -10.85 9.54 -184.92 -1.76 -12.62 16 30 C 0.09 1.50 10.15 84.81 0.86 2.36 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.06 0.44 7.45 -2.38 -0.02 0.42 16 34 H 0.06 0.44 7.53 -2.38 -0.02 0.42 16 35 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.48 7.52 -2.39 -0.02 0.46 16 37 H 0.06 0.36 7.45 -2.38 -0.02 0.34 16 38 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.17 1.39 7.24 -2.91 -0.02 1.37 16 41 H 0.15 2.99 7.64 -2.91 -0.02 2.97 16 42 H 0.42 10.41 7.70 -92.71 -0.71 9.69 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 49 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.37 16.61 5.37 -92.71 -0.50 16.11 16 52 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 53 H 0.18 2.28 5.90 -2.91 -0.02 2.26 16 Total: -1.00 -76.28 417.48 2.31 -73.96 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.36 Total: 35.30 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.33 Total: -0.51 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -5.49 Total: -136.42 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.13 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -76.28 2.31 -73.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568523689.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.867 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds