Wall clock time and date at job start Wed Apr 1 2020 03:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 C 1.53007 * 109.46913 * 240.00386 * 2 1 3 5 5 C 1.50698 * 109.47291 * 120.00460 * 2 1 3 6 6 O 1.21281 * 119.99735 * 357.11499 * 5 2 1 7 7 N 1.34771 * 120.00300 * 177.12166 * 5 2 1 8 8 C 1.46499 * 119.99977 * 185.64075 * 7 5 2 9 9 C 1.50709 * 109.47085 * 275.37821 * 8 7 5 10 10 C 1.38222 * 119.61195 * 94.16983 * 9 8 7 11 11 C 1.38630 * 119.15604 * 179.74881 * 10 9 8 12 12 C 1.38678 * 118.42050 * 0.46982 * 11 10 9 13 13 C 1.38175 * 119.16169 * 359.50783 * 12 11 10 14 14 N 1.31853 * 119.61795 * 274.14705 * 9 8 7 15 15 C 1.46503 * 119.99913 * 5.64178 * 7 5 2 16 16 C 1.53043 * 109.45561 * 234.98709 * 15 7 5 17 17 C 1.53198 * 109.31014 * 178.61224 * 16 15 7 18 18 N 1.46923 * 108.77463 * 54.63498 * 17 16 15 19 19 C 1.36934 * 120.63078 * 126.41062 * 18 17 16 20 20 H 1.08002 * 120.00331 * 324.76638 * 19 18 17 21 21 C 1.38819 * 120.00139 * 144.76163 * 19 18 17 22 22 N 1.31618 * 120.00189 * 170.76981 * 21 19 18 23 23 Si 1.86801 * 119.99626 * 350.77555 * 21 19 18 24 24 H 1.48495 * 109.47114 * 86.75037 * 23 21 19 25 25 H 1.48504 * 109.46775 * 206.74992 * 23 21 19 26 26 H 1.48495 * 109.46931 * 326.74487 * 23 21 19 27 27 C 1.46930 * 118.74085 * 306.39028 * 18 17 16 28 28 C 1.53034 * 109.45952 * 114.92092 * 15 7 5 29 29 H 1.09002 * 109.47100 * 299.99911 * 1 2 3 30 30 H 1.09004 * 109.47146 * 59.99544 * 1 2 3 31 31 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46858 * 184.17127 * 3 2 1 33 33 H 1.08997 * 109.47393 * 304.16994 * 3 2 1 34 34 H 1.09002 * 109.46872 * 64.17384 * 3 2 1 35 35 H 1.09002 * 109.46798 * 309.39693 * 4 2 1 36 36 H 1.08994 * 109.47327 * 69.40163 * 4 2 1 37 37 H 1.09008 * 109.46710 * 189.40614 * 4 2 1 38 38 H 1.09001 * 109.47226 * 155.38468 * 8 7 5 39 39 H 1.09000 * 109.47222 * 35.38176 * 8 7 5 40 40 H 1.07999 * 120.42956 * 359.95465 * 10 9 8 41 41 H 1.08004 * 120.79498 * 180.23351 * 11 10 9 42 42 H 1.07999 * 120.41527 * 179.78252 * 12 11 10 43 43 H 1.08002 * 119.62131 * 180.25085 * 13 12 11 44 44 H 1.09000 * 109.45651 * 354.94346 * 15 7 5 45 45 H 1.08995 * 109.49998 * 298.56502 * 16 15 7 46 46 H 1.08997 * 109.49888 * 58.66587 * 16 15 7 47 47 H 1.09002 * 109.58624 * 294.84567 * 17 16 15 48 48 H 1.09001 * 109.70055 * 174.49120 * 17 16 15 49 49 H 0.96999 * 119.99913 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.58424 * 293.82222 * 27 18 17 51 51 H 1.09000 * 109.70204 * 173.46020 * 27 18 17 52 52 H 1.08999 * 109.49629 * 301.33469 * 28 15 7 53 53 H 1.08994 * 109.50217 * 61.43292 * 28 15 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2304 6 8 1.2455 -1.1255 2.0547 7 7 3.3560 -0.8847 1.4148 8 6 3.8395 -1.6814 2.5451 9 6 3.9210 -0.8125 3.7738 10 6 2.8577 -0.7759 4.6562 11 6 2.9448 0.0226 5.7861 12 6 4.0994 0.7653 5.9820 13 6 5.1216 0.6776 5.0563 14 7 5.0058 -0.0963 3.9947 15 6 4.3113 -0.2772 0.4849 16 6 5.2364 -1.3601 -0.0752 17 6 6.2113 -0.7271 -1.0732 18 7 6.9118 0.3819 -0.4113 19 6 8.2800 0.4361 -0.4016 20 1 8.8562 -0.4748 -0.3334 21 6 8.9267 1.6621 -0.4795 22 7 10.2269 1.7336 -0.2884 23 14 7.9513 3.2102 -0.8556 24 1 7.4144 3.7761 0.4080 25 1 8.8377 4.2075 -1.5074 26 1 6.8266 2.8776 -1.7663 27 6 6.1164 1.4319 0.2395 28 6 5.1426 0.7747 1.2228 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1275 1.4434 -0.0748 33 1 1.6170 1.9775 -0.8502 34 1 1.7390 1.9342 0.9251 35 1 1.5461 -1.6889 -1.3372 36 1 1.8202 -0.1197 -2.1313 37 1 3.1170 -0.8690 -1.1693 38 1 4.8284 -2.0773 2.3140 39 1 3.1515 -2.5066 2.7286 40 1 1.9716 -1.3645 4.4697 41 1 2.1313 0.0681 6.4951 42 1 4.2001 1.4009 6.8493 43 1 6.0257 1.2497 5.2036 44 1 3.7698 0.1966 -0.3339 45 1 5.7966 -1.8175 0.7403 46 1 4.6417 -2.1211 -0.5804 47 1 5.6592 -0.3490 -1.9336 48 1 6.9355 -1.4722 -1.4024 49 1 10.6787 2.5903 -0.3425 50 1 5.5566 1.9860 -0.5139 51 1 6.7762 2.1120 0.7783 52 1 4.4810 1.5331 1.6414 53 1 5.7036 0.2972 2.0260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569871943.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:25 Heat of formation + Delta-G solvation = 27.844640 kcal Electronic energy + Delta-G solvation = -33334.248098 eV Core-core repulsion = 29399.753325 eV Total energy + Delta-G solvation = -3934.494773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.15861 -40.84154 -39.32412 -36.86336 -36.69885 -34.31577 -33.42625 -32.89751 -31.98589 -31.55901 -28.70573 -28.27135 -27.65799 -26.85479 -24.53243 -24.31715 -24.08750 -23.45267 -22.44955 -20.85345 -19.84619 -18.85423 -17.95431 -17.75152 -17.24131 -17.02860 -16.75178 -16.58473 -16.01415 -15.91483 -15.71843 -15.33283 -15.20668 -15.07540 -14.66896 -14.52135 -14.36997 -14.09682 -14.03789 -13.80169 -13.74878 -13.43895 -13.29277 -13.04313 -12.99292 -12.87257 -12.68632 -12.59265 -12.54451 -12.38009 -12.07736 -11.97420 -11.87979 -11.70231 -11.59583 -11.42584 -11.14824 -10.83554 -10.71515 -10.57227 -10.28930 -9.93679 -9.66144 -8.76717 -8.11504 -5.54476 0.11141 0.36502 1.32662 1.41367 1.51030 1.59359 1.97497 2.44611 2.92561 3.16319 3.27144 3.34867 3.44249 3.75882 3.78048 3.82541 3.89728 3.99040 4.04317 4.13257 4.18748 4.22754 4.24262 4.40455 4.45584 4.49987 4.52678 4.64423 4.64953 4.68121 4.75221 4.78051 4.80505 4.83776 4.85934 4.91037 4.95079 4.97985 5.03864 5.08469 5.12501 5.21160 5.21933 5.25784 5.28937 5.35829 5.40540 5.48148 5.65269 5.82367 5.97717 6.19658 6.41273 6.98513 7.08132 7.13709 7.65536 8.08615 9.08337 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.004962 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.877412 B = 5641.885685 C = 7285.030339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.159 4.159 4 C -0.160 4.160 5 C 0.521 3.479 6 O -0.567 6.567 7 N -0.589 5.589 8 C 0.164 3.836 9 C 0.094 3.906 10 C -0.154 4.154 11 C -0.082 4.082 12 C -0.164 4.164 13 C 0.076 3.924 14 N -0.491 5.491 15 C 0.129 3.871 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.617 5.617 19 C -0.243 4.243 20 H 0.046 0.954 21 C -0.033 4.033 22 N -0.965 5.965 23 Si 0.954 3.046 24 H -0.280 1.280 25 H -0.315 1.315 26 H -0.249 1.249 27 C 0.124 3.876 28 C -0.137 4.137 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.130 0.870 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.260 0.740 50 H 0.036 0.964 51 H 0.044 0.956 52 H 0.048 0.952 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 -3.499 5.273 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.087 4.087 3 C -0.216 4.216 4 C -0.217 4.217 5 C 0.311 3.689 6 O -0.446 6.446 7 N -0.320 5.320 8 C 0.040 3.960 9 C -0.045 4.045 10 C -0.174 4.174 11 C -0.108 4.108 12 C -0.184 4.184 13 C -0.081 4.081 14 N -0.201 5.201 15 C 0.027 3.973 16 C -0.175 4.175 17 C 0.023 3.977 18 N -0.342 5.342 19 C -0.373 4.373 20 H 0.064 0.936 21 C -0.227 4.227 22 N -0.611 5.611 23 Si 0.783 3.217 24 H -0.207 1.207 25 H -0.244 1.244 26 H -0.173 1.173 27 C -0.002 4.002 28 C -0.177 4.177 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.180 0.820 43 H 0.178 0.822 44 H 0.147 0.853 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.054 0.946 51 H 0.063 0.937 52 H 0.066 0.934 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.411 -3.711 5.087 22.317 hybrid contribution -0.032 0.967 0.904 1.324 sum -21.442 -2.744 5.991 22.432 Atomic orbital electron populations 1.21609 0.91202 1.02435 1.02383 1.20816 0.98373 0.96285 0.93212 1.22303 1.02182 0.93802 1.03276 1.22304 1.02447 1.01135 0.95837 1.21135 0.81316 0.78601 0.87846 1.90604 1.55561 1.51868 1.46549 1.48064 1.05666 1.51443 1.26778 1.20267 1.01627 0.91733 0.82348 1.21667 0.90041 0.96262 0.96511 1.22161 0.99360 1.00637 0.95279 1.21944 0.98387 0.93809 0.96683 1.22434 0.94063 1.00587 1.01302 1.23100 0.99639 0.95572 0.89802 1.67482 1.25402 1.06479 1.20720 1.21850 0.89739 0.93669 0.92003 1.22330 0.97529 0.97826 0.99767 1.21077 0.93889 0.89484 0.93296 1.44376 1.01480 1.26012 1.62291 1.18781 0.81738 0.93116 1.43651 0.93590 1.26096 0.95852 1.01280 0.99496 1.69903 1.10018 1.25801 1.55413 0.85853 0.78109 0.79378 0.78318 1.20682 1.24405 1.17301 1.21395 0.93229 0.91529 0.94004 1.22421 0.97703 0.98077 0.99452 0.93350 0.89840 0.92527 0.91375 0.89041 0.93240 0.91397 0.89390 0.90863 0.88889 0.88374 0.84504 0.82226 0.81962 0.82197 0.85298 0.92632 0.89091 0.93596 0.92197 0.93112 0.94618 0.93738 0.93379 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 7.75 71.98 0.56 -1.63 16 2 C -0.08 -1.72 0.75 -52.93 -0.04 -1.76 16 3 C -0.16 -3.24 8.11 71.98 0.58 -2.66 16 4 C -0.16 -2.75 8.08 71.98 0.58 -2.17 16 5 C 0.52 13.67 6.42 87.66 0.56 14.23 16 6 O -0.57 -17.24 14.52 -3.03 -0.04 -17.29 16 7 N -0.59 -15.56 2.37 -801.98 -1.90 -17.46 16 8 C 0.16 4.41 5.06 85.64 0.43 4.84 16 9 C 0.09 2.67 6.02 42.55 0.26 2.92 16 10 C -0.15 -3.85 9.22 22.36 0.21 -3.64 16 11 C -0.08 -1.67 10.18 22.47 0.23 -1.45 16 12 C -0.16 -3.32 10.11 22.36 0.23 -3.10 16 13 C 0.08 1.99 11.18 84.67 0.95 2.94 16 14 N -0.49 -15.31 7.51 -183.88 -1.38 -16.70 16 15 C 0.13 3.60 0.76 45.02 0.03 3.63 16 16 C -0.14 -3.86 4.72 30.68 0.14 -3.71 16 17 C 0.15 5.20 6.52 86.37 0.56 5.76 16 18 N -0.62 -27.78 2.71 -699.06 -1.90 -29.68 16 19 C -0.24 -13.62 10.04 84.04 0.84 -12.77 16 20 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 21 C -0.03 -1.92 5.38 84.86 0.46 -1.46 16 22 N -0.97 -61.02 13.97 21.65 0.30 -60.71 16 23 Si 0.95 46.41 24.26 68.60 1.66 48.07 16 24 H -0.28 -13.10 6.53 99.48 0.65 -12.45 16 25 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 26 H -0.25 -11.14 6.39 99.48 0.64 -10.51 16 27 C 0.12 5.10 4.14 86.37 0.36 5.46 16 28 C -0.14 -4.72 4.11 30.67 0.13 -4.59 16 29 H 0.05 1.00 8.07 -2.39 -0.02 0.98 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.07 1.59 3.96 -2.38 -0.01 1.58 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 36 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 37 H 0.07 1.40 3.70 -2.38 -0.01 1.39 16 38 H 0.09 2.61 6.20 -2.39 -0.01 2.59 16 39 H 0.10 2.44 7.58 -2.39 -0.02 2.42 16 40 H 0.14 3.38 7.39 -2.91 -0.02 3.36 16 41 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.13 3.24 2.43 -2.39 -0.01 3.23 16 45 H 0.05 1.78 6.56 -2.39 -0.02 1.77 16 46 H 0.09 2.07 7.49 -2.39 -0.02 2.05 16 47 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 49 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 50 H 0.04 1.38 6.76 -2.39 -0.02 1.37 16 51 H 0.04 2.09 4.64 -2.39 -0.01 2.08 16 52 H 0.05 1.62 7.81 -2.39 -0.02 1.61 16 53 H 0.09 3.34 5.51 -2.39 -0.01 3.32 16 Total: -1.00 -71.31 387.40 4.60 -66.71 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.78 Total: 26.23 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 7.07 Total: 0.83 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -4.87 Total: -124.55 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.04 Total: -17.29 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.66 Total: 48.07 kcal Total: -71.31 4.60 -66.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569871943.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.551 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds