Wall clock time and date at job start Wed Apr 1 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 C 1.52991 * 109.47402 * 120.00736 * 2 1 3 5 5 H 1.09001 * 109.46892 * 306.93987 * 4 2 1 6 6 C 1.50697 * 109.47440 * 66.93897 * 4 2 1 7 7 O 1.21280 * 119.99921 * 18.42697 * 6 4 2 8 8 N 1.34781 * 119.99925 * 198.42356 * 6 4 2 9 9 C 1.47744 * 125.82550 * 5.99137 * 8 6 4 10 10 C 1.54906 * 104.84392 * 204.25017 * 9 8 6 11 11 C 1.55160 * 101.57868 * 322.90702 * 10 9 8 12 12 C 1.47022 * 125.64375 * 185.99501 * 8 6 4 13 13 H 1.08991 * 109.88662 * 59.32256 * 12 8 6 14 14 C 1.53009 * 109.88065 * 298.30851 * 12 8 6 15 15 N 1.46490 * 109.47129 * 304.44225 * 14 12 8 16 16 C 1.46505 * 120.00295 * 262.70758 * 15 14 12 17 17 C 1.36940 * 120.00051 * 82.71421 * 15 14 12 18 18 H 1.07999 * 119.99977 * 333.53761 * 17 15 14 19 19 C 1.38813 * 119.99999 * 153.54486 * 17 15 14 20 20 N 1.31613 * 119.99940 * 161.07231 * 19 17 15 21 21 Si 1.86803 * 120.00045 * 341.33496 * 19 17 15 22 22 H 1.48503 * 109.46842 * 84.77840 * 21 19 17 23 23 H 1.48496 * 109.47276 * 204.77707 * 21 19 17 24 24 H 1.48497 * 109.47285 * 324.77945 * 21 19 17 25 25 C 1.50699 * 109.47113 * 186.94460 * 4 2 1 26 26 C 1.38679 * 120.42226 * 124.00669 * 25 4 2 27 27 C 1.38626 * 118.42458 * 179.78150 * 26 25 4 28 28 C 1.38237 * 119.15647 * 0.46829 * 27 26 25 29 29 N 1.31854 * 120.76434 * 359.76885 * 28 27 26 30 30 C 1.31890 * 121.72654 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.46811 * 299.08520 * 1 2 3 32 32 H 1.08997 * 109.47913 * 59.08563 * 1 2 3 33 33 H 1.09003 * 109.47502 * 179.08858 * 1 2 3 34 34 H 1.09005 * 109.46708 * 240.00852 * 2 1 3 35 35 H 1.09003 * 109.47194 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47304 * 300.00332 * 3 2 1 37 37 H 1.09001 * 109.47021 * 60.00477 * 3 2 1 38 38 H 1.09001 * 110.43016 * 85.37333 * 9 8 6 39 39 H 1.09001 * 110.37977 * 323.10333 * 9 8 6 40 40 H 1.08995 * 111.00394 * 204.83629 * 10 9 8 41 41 H 1.08998 * 111.00597 * 80.98042 * 10 9 8 42 42 H 1.08997 * 110.72001 * 277.13655 * 11 10 9 43 43 H 1.09005 * 110.71833 * 153.86842 * 11 10 9 44 44 H 1.09001 * 109.46484 * 184.43913 * 14 12 8 45 45 H 1.08997 * 109.46759 * 64.44535 * 14 12 8 46 46 H 1.08994 * 109.47214 * 264.02002 * 16 15 14 47 47 H 1.09002 * 109.46682 * 24.01446 * 16 15 14 48 48 H 1.08998 * 109.46975 * 144.01334 * 16 15 14 49 49 H 0.97007 * 120.00154 * 179.97438 * 20 19 17 50 50 H 1.07999 * 120.78481 * 0.02562 * 26 25 4 51 51 H 1.07988 * 120.42200 * 180.26002 * 27 26 25 52 52 H 1.07995 * 119.61706 * 179.74739 * 28 27 26 53 53 H 1.07998 * 119.61301 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.5789 -0.2843 2.1347 6 6 1.6828 -2.1830 1.1661 7 8 1.3912 -2.6763 0.0972 8 7 1.6875 -2.9421 2.2798 9 6 1.8988 -2.4540 3.6582 10 6 2.4261 -3.6840 4.4384 11 6 1.6017 -4.8337 3.8012 12 6 1.4828 -4.3973 2.3257 13 1 2.2448 -4.8979 1.7285 14 6 0.0918 -4.7442 1.7910 15 7 -0.9208 -4.0035 2.5473 16 6 -1.6227 -4.6496 3.6592 17 6 -1.2114 -2.7073 2.2150 18 1 -0.4660 -2.0939 1.7307 19 6 -2.4640 -2.1816 2.5007 20 7 -2.6378 -0.8775 2.5362 21 14 -3.9011 -3.3252 2.8420 22 1 -3.8915 -3.7184 4.2739 23 1 -5.1740 -2.6275 2.5288 24 1 -3.7802 -4.5386 1.9946 25 6 3.5372 -0.5743 1.3379 26 6 4.1234 -0.0312 2.4713 27 6 5.5046 0.0806 2.5107 28 6 6.2457 -0.3410 1.4227 29 7 5.6539 -0.8483 0.3592 30 6 4.3428 -0.9734 0.2886 31 1 -0.3633 0.4996 0.8981 32 1 -0.3635 0.5279 -0.8816 33 1 -0.3634 -1.0275 -0.0163 34 1 1.8933 -0.5137 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 0.9588 -2.1071 4.0873 39 1 2.6380 -1.6530 3.6681 40 1 2.2113 -3.5928 5.5030 41 1 3.4930 -3.8270 4.2675 42 1 0.6170 -4.9041 4.2631 43 1 2.1351 -5.7810 3.8814 44 1 -0.0831 -5.8145 1.9010 45 1 0.0295 -4.4723 0.7373 46 1 -2.5741 -5.0473 3.3062 47 1 -1.0118 -5.4630 4.0508 48 1 -1.8041 -3.9193 4.4477 49 1 -3.5133 -0.5101 2.7355 50 1 3.5185 0.2933 3.3050 51 1 5.9951 0.4949 3.3790 52 1 7.3219 -0.2535 1.4438 53 1 3.8939 -1.3940 -0.5990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570543485.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:19 Heat of formation + Delta-G solvation = 14.256409 kcal Electronic energy + Delta-G solvation = -33729.072618 eV Core-core repulsion = 29793.988615 eV Total energy + Delta-G solvation = -3935.084003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.92669 -40.69403 -38.92813 -36.93976 -36.78047 -33.76120 -33.50641 -32.65440 -32.08042 -31.19584 -28.51053 -28.10330 -27.76957 -26.77077 -24.61623 -24.32579 -23.41728 -22.83631 -22.08924 -20.69436 -19.62039 -18.87606 -18.23530 -17.90929 -17.53660 -17.00530 -16.90973 -16.42691 -16.15249 -15.60853 -15.42883 -15.14846 -15.05190 -14.85653 -14.55073 -14.48448 -14.22495 -14.02926 -14.01643 -13.91723 -13.70977 -13.44987 -13.28220 -13.09471 -13.01220 -12.91010 -12.75417 -12.40782 -12.23367 -12.10987 -11.91846 -11.83797 -11.80518 -11.73378 -11.54920 -11.49520 -11.22772 -10.89311 -10.59343 -10.48338 -10.37627 -9.79339 -9.48453 -8.64837 -7.98336 -5.28599 0.15348 0.35075 1.30898 1.43431 1.48698 1.83543 2.26027 2.52376 2.86681 3.26507 3.44464 3.48768 3.57852 3.73575 3.76402 3.80464 3.97133 4.03171 4.08928 4.14299 4.19183 4.25167 4.40360 4.46516 4.52941 4.54920 4.55404 4.58766 4.66493 4.69370 4.72192 4.78230 4.82763 4.86913 4.92073 4.97076 5.02858 5.04800 5.06764 5.16240 5.18415 5.20616 5.21814 5.26725 5.31562 5.47001 5.53149 5.58109 5.68526 5.79324 6.07046 6.39539 6.81555 7.03982 7.09623 7.42425 7.81177 8.14912 9.19285 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.004803 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.969505 B = 5828.251593 C = 6969.510914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.132 4.132 4 C -0.045 4.045 5 H 0.093 0.907 6 C 0.546 3.454 7 O -0.578 6.578 8 N -0.592 5.592 9 C 0.102 3.898 10 C -0.115 4.115 11 C -0.121 4.121 12 C 0.117 3.883 13 H 0.064 0.936 14 C 0.135 3.865 15 N -0.613 5.613 16 C 0.105 3.895 17 C -0.225 4.225 18 H 0.091 0.909 19 C -0.031 4.031 20 N -0.944 5.944 21 Si 0.934 3.066 22 H -0.275 1.275 23 H -0.328 1.328 24 H -0.292 1.292 25 C -0.115 4.115 26 C -0.072 4.072 27 C -0.153 4.153 28 C 0.085 3.915 29 N -0.506 5.506 30 C 0.095 3.905 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.028 0.972 46 H -0.008 1.008 47 H 0.082 0.918 48 H 0.038 0.962 49 H 0.252 0.748 50 H 0.152 0.848 51 H 0.173 0.827 52 H 0.184 0.816 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.358 0.091 6.208 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.189 4.189 4 C -0.067 4.067 5 H 0.111 0.889 6 C 0.335 3.665 7 O -0.459 6.459 8 N -0.323 5.323 9 C -0.020 4.020 10 C -0.153 4.153 11 C -0.159 4.159 12 C 0.012 3.988 13 H 0.082 0.918 14 C 0.008 3.992 15 N -0.337 5.337 16 C -0.039 4.039 17 C -0.355 4.355 18 H 0.108 0.892 19 C -0.225 4.225 20 N -0.591 5.591 21 Si 0.768 3.232 22 H -0.202 1.202 23 H -0.258 1.258 24 H -0.219 1.219 25 C -0.117 4.117 26 C -0.098 4.098 27 C -0.173 4.173 28 C -0.072 4.072 29 N -0.215 5.215 30 C -0.061 4.061 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.010 0.990 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.170 0.830 51 H 0.191 0.809 52 H 0.201 0.799 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.618 -0.315 4.914 19.258 hybrid contribution -2.521 -0.181 0.337 2.549 sum 16.097 -0.496 5.250 16.939 Atomic orbital electron populations 1.21636 0.95044 1.00935 1.00948 1.20872 0.95145 0.96661 0.95814 1.21751 1.00611 0.94039 1.02533 1.20181 0.92821 0.92185 1.01506 0.88899 1.20020 0.75761 0.88108 0.82585 1.90615 1.50479 1.74748 1.30024 1.48262 1.69354 1.08085 1.06576 1.22430 0.99965 0.98327 0.81302 1.22664 0.99784 0.92846 1.00014 1.22722 1.01660 0.99255 0.92231 1.22238 0.97014 0.81020 0.98572 0.91843 1.21234 0.88514 0.94975 0.94459 1.44197 1.44199 1.11591 1.33749 1.21474 0.95037 0.97313 0.90107 1.19345 0.96352 0.86656 1.33137 0.89180 1.25679 0.98758 0.96098 1.01938 1.69882 1.22791 1.11032 1.55434 0.86262 0.80469 0.78539 0.77897 1.20178 1.25805 1.21887 1.20315 0.93840 1.01118 0.96450 1.21803 0.96091 0.95244 0.96670 1.22473 0.93568 1.00240 1.00990 1.23364 1.01968 0.93347 0.88498 1.67711 1.11231 1.14477 1.28058 1.22417 0.89328 0.96552 0.97825 0.93623 0.92765 0.95062 0.91593 0.92327 0.91696 0.92207 0.93193 0.90141 0.88421 0.89823 0.90425 0.88391 0.91131 0.95317 0.99013 0.89976 0.94338 0.93917 0.83021 0.80917 0.79914 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.76 71.98 0.63 -4.74 16 2 C -0.07 -2.26 1.86 -10.80 -0.02 -2.28 16 3 C -0.13 -3.59 8.84 71.98 0.64 -2.95 16 4 C -0.04 -1.49 1.25 -12.29 -0.02 -1.50 16 5 H 0.09 3.21 7.37 -2.39 -0.02 3.20 16 6 C 0.55 21.45 3.60 87.66 0.32 21.76 16 7 O -0.58 -27.00 13.83 -3.03 -0.04 -27.04 16 8 N -0.59 -20.80 1.97 -787.24 -1.55 -22.35 16 9 C 0.10 2.96 6.48 86.79 0.56 3.52 16 10 C -0.12 -2.46 7.09 31.99 0.23 -2.24 16 11 C -0.12 -2.97 6.37 31.78 0.20 -2.77 16 12 C 0.12 3.86 3.26 45.34 0.15 4.00 16 13 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 14 C 0.13 5.34 5.30 86.38 0.46 5.80 16 15 N -0.61 -27.67 2.43 -726.94 -1.77 -29.44 16 16 C 0.10 4.22 7.34 127.77 0.94 5.16 16 17 C -0.23 -12.04 9.32 84.03 0.78 -11.26 16 18 H 0.09 5.04 3.49 -2.91 -0.01 5.03 16 19 C -0.03 -1.75 5.31 84.86 0.45 -1.30 16 20 N -0.94 -56.68 13.97 21.65 0.30 -56.38 16 21 Si 0.93 47.93 23.94 68.60 1.64 49.57 16 22 H -0.28 -13.13 6.60 99.48 0.66 -12.47 16 23 H -0.33 -17.57 7.11 99.48 0.71 -16.86 16 24 H -0.29 -15.13 6.71 99.48 0.67 -14.46 16 25 C -0.11 -3.07 3.08 -19.77 -0.06 -3.13 16 26 C -0.07 -1.45 8.48 22.47 0.19 -1.26 16 27 C -0.15 -2.37 10.11 22.36 0.23 -2.15 16 28 C 0.09 1.58 11.18 84.69 0.95 2.53 16 29 N -0.51 -13.37 10.36 -195.84 -2.03 -15.39 16 30 C 0.09 2.75 9.78 84.67 0.83 3.58 16 31 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 1.57 5.65 -2.39 -0.01 1.55 16 34 H 0.07 2.40 6.96 -2.38 -0.02 2.38 16 35 H 0.06 1.47 6.75 -2.39 -0.02 1.46 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.97 5.43 -2.39 -0.01 1.95 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 2.11 4.60 -2.39 -0.01 2.10 16 43 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.07 2.40 8.01 -2.39 -0.02 2.38 16 45 H 0.03 1.36 6.77 -2.39 -0.02 1.34 16 46 H -0.01 -0.33 4.54 -2.39 -0.01 -0.34 16 47 H 0.08 2.57 6.33 -2.39 -0.02 2.55 16 48 H 0.04 1.64 6.84 -2.39 -0.02 1.62 16 49 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 50 H 0.15 2.52 7.60 -2.91 -0.02 2.50 16 51 H 0.17 1.33 8.06 -2.92 -0.02 1.31 16 52 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 53 H 0.13 4.31 7.45 -2.91 -0.02 4.29 16 Total: -1.00 -73.32 389.80 4.82 -68.50 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.82 Total: 21.76 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 7.45 Total: 10.77 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -5.04 Total: -123.56 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.64 Total: 49.57 kcal Total: -73.32 4.82 -68.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570543485.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.761 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds