Wall clock time and date at job start Wed Apr 1 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47000 * 2 1 4 4 C 1.53001 * 109.46586 * 119.99446 * 2 1 3 5 5 H 1.09002 * 109.47513 * 303.82562 * 4 2 1 6 6 C 1.50697 * 109.47094 * 63.83052 * 4 2 1 7 7 O 1.21273 * 120.00236 * 7.47974 * 6 4 2 8 8 N 1.34777 * 119.99755 * 187.48128 * 6 4 2 9 9 C 1.47745 * 125.82363 * 6.07060 * 8 6 4 10 10 C 1.54916 * 104.83872 * 155.82893 * 9 8 6 11 11 C 1.55153 * 101.58264 * 37.09818 * 10 9 8 12 12 C 1.47026 * 125.64843 * 186.16556 * 8 6 4 13 13 H 1.09009 * 109.87923 * 300.59780 * 12 8 6 14 14 C 1.52999 * 109.88390 * 61.60679 * 12 8 6 15 15 N 1.46501 * 109.46839 * 299.84049 * 14 12 8 16 16 C 1.46499 * 120.00243 * 281.54927 * 15 14 12 17 17 C 1.36939 * 120.00133 * 101.55423 * 15 14 12 18 18 H 1.08003 * 119.99377 * 332.61699 * 17 15 14 19 19 C 1.38809 * 120.00344 * 152.61660 * 17 15 14 20 20 N 1.31618 * 120.00093 * 349.55973 * 19 17 15 21 21 Si 1.86800 * 120.00074 * 169.54938 * 19 17 15 22 22 H 1.48500 * 109.47164 * 180.68629 * 21 19 17 23 23 H 1.48496 * 109.47563 * 300.69294 * 21 19 17 24 24 H 1.48501 * 109.46819 * 60.69219 * 21 19 17 25 25 C 1.50700 * 109.46978 * 183.82764 * 4 2 1 26 26 C 1.38668 * 120.42313 * 128.90196 * 25 4 2 27 27 C 1.38631 * 118.42636 * 180.02562 * 26 25 4 28 28 C 1.38226 * 119.15744 * 0.02562 * 27 26 25 29 29 N 1.31848 * 120.76484 * 359.97438 * 28 27 26 30 30 C 1.31891 * 121.72724 * 359.70936 * 29 28 27 31 31 H 1.09004 * 109.47367 * 304.62187 * 1 2 3 32 32 H 1.09001 * 109.46787 * 64.61908 * 1 2 3 33 33 H 1.09001 * 109.47717 * 184.61664 * 1 2 3 34 34 H 1.08996 * 109.47340 * 239.99585 * 2 1 3 35 35 H 1.09003 * 109.47069 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47495 * 299.99129 * 3 2 1 37 37 H 1.09000 * 109.47778 * 59.99938 * 3 2 1 38 38 H 1.08995 * 110.29172 * 37.02892 * 9 8 6 39 39 H 1.09000 * 110.43420 * 274.70682 * 9 8 6 40 40 H 1.08997 * 111.00650 * 279.02281 * 10 9 8 41 41 H 1.09005 * 111.03682 * 155.18494 * 10 9 8 42 42 H 1.09003 * 110.71737 * 206.13642 * 11 10 9 43 43 H 1.08995 * 110.87550 * 82.93103 * 11 10 9 44 44 H 1.08999 * 109.46934 * 179.84403 * 14 12 8 45 45 H 1.08996 * 109.47173 * 59.84031 * 14 12 8 46 46 H 1.09003 * 109.47197 * 272.35824 * 16 15 14 47 47 H 1.08998 * 109.47244 * 32.35959 * 16 15 14 48 48 H 1.08998 * 109.47193 * 152.36166 * 16 15 14 49 49 H 0.96996 * 120.00093 * 180.02562 * 20 19 17 50 50 H 1.08012 * 120.78968 * 359.97438 * 26 25 4 51 51 H 1.07996 * 120.42060 * 180.02562 * 27 26 25 52 52 H 1.08001 * 119.61180 * 180.02562 * 28 27 26 53 53 H 1.07998 * 119.61730 * 180.31369 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 1 1.6216 -0.2484 2.1380 6 6 1.6164 -2.1667 1.2029 7 8 1.0903 -2.6127 0.2055 8 7 1.8225 -2.9638 2.2700 9 6 2.3326 -2.5307 3.5872 10 6 1.8125 -3.5965 4.5840 11 6 1.9277 -4.8939 3.7410 12 6 1.5786 -4.4129 2.3169 13 1 0.5299 -4.6194 2.1024 14 6 2.4681 -5.1237 1.2949 15 7 2.1602 -4.6281 -0.0489 16 6 0.9710 -5.1129 -0.7538 17 6 2.9840 -3.7116 -0.6462 18 1 3.5672 -3.0342 -0.0401 19 6 3.0694 -3.6534 -2.0304 20 7 2.5258 -4.6016 -2.7638 21 14 3.9555 -2.2292 -2.8524 22 1 3.8920 -2.3916 -4.3271 23 1 3.3041 -0.9517 -2.4665 24 1 5.3752 -2.2121 -2.4170 25 6 3.5438 -0.6396 1.2978 26 6 4.1865 -0.1976 2.4443 27 6 5.5716 -0.1384 2.4432 28 6 6.2610 -0.5188 1.3071 29 7 5.6166 -0.9342 0.2345 30 6 4.3002 -1.0092 0.2019 31 1 -0.3634 0.5839 0.8457 32 1 -0.3633 0.4405 -0.9285 33 1 -0.3634 -1.0243 0.0827 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.9360 -1.5479 3.8416 39 1 3.4225 -2.5123 3.5860 40 1 0.7764 -3.4006 4.8600 41 1 2.4473 -3.6477 5.4686 42 1 1.2107 -5.6405 4.0825 43 1 2.9421 -5.2911 3.7761 44 1 2.2839 -6.1972 1.3373 45 1 3.5151 -4.9253 1.5243 46 1 1.2194 -6.0207 -1.3037 47 1 0.1837 -5.3295 -0.0318 48 1 0.6250 -4.3494 -1.4505 49 1 2.5858 -4.5611 -3.7310 50 1 3.6214 0.0945 3.3172 51 1 6.1051 0.2006 3.3188 52 1 7.3402 -0.4760 1.2984 53 1 3.8075 -1.3591 -0.6932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570543486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:24 Heat of formation + Delta-G solvation = 33.984923 kcal Electronic energy + Delta-G solvation = -34747.038999 eV Core-core repulsion = 30812.810489 eV Total energy + Delta-G solvation = -3934.228510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.86099 -40.49157 -38.62166 -37.09594 -36.42466 -33.71427 -33.29410 -32.61204 -31.88840 -30.56627 -28.48433 -27.92980 -27.82721 -26.63606 -24.60231 -24.23199 -23.46661 -22.53526 -21.97561 -20.74882 -19.41911 -18.82422 -18.39526 -17.90651 -17.14730 -16.98643 -16.73462 -16.52049 -15.90837 -15.64309 -15.30068 -15.04216 -14.91023 -14.79029 -14.46547 -14.30394 -14.02329 -13.94584 -13.54886 -13.52549 -13.47890 -13.30778 -13.13806 -13.05183 -12.93929 -12.79903 -12.57962 -12.38517 -12.22905 -12.03254 -11.95828 -11.83862 -11.80545 -11.70663 -11.50545 -11.48436 -11.44485 -10.78153 -10.49337 -10.25537 -10.23855 -9.64621 -9.32673 -8.24802 -7.69116 -5.10265 0.20703 0.43095 1.29141 1.33934 1.43445 2.16127 2.44910 2.50488 2.91459 3.48065 3.56982 3.64261 3.76825 3.82083 3.85438 3.94753 4.05235 4.10843 4.13242 4.17100 4.21574 4.28889 4.40004 4.48801 4.57188 4.58311 4.68950 4.72267 4.75229 4.77096 4.77996 4.88385 4.91483 4.95763 4.96739 5.04025 5.05164 5.08079 5.21193 5.21321 5.23108 5.29022 5.32565 5.46531 5.48926 5.51085 5.53519 5.70001 5.78991 5.86882 5.91453 6.48702 7.06528 7.14647 7.30521 7.87479 8.03212 8.50141 9.35637 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.007949 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.950618 B = 3521.610839 C = 4785.686728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C -0.135 4.135 4 C -0.042 4.042 5 H 0.128 0.872 6 C 0.509 3.491 7 O -0.493 6.493 8 N -0.618 5.618 9 C 0.096 3.904 10 C -0.116 4.116 11 C -0.118 4.118 12 C 0.121 3.879 13 H 0.042 0.958 14 C 0.140 3.860 15 N -0.593 5.593 16 C 0.210 3.790 17 C -0.173 4.173 18 H 0.073 0.927 19 C -0.055 4.055 20 N -0.947 5.947 21 Si 0.914 3.086 22 H -0.314 1.314 23 H -0.278 1.278 24 H -0.272 1.272 25 C -0.119 4.119 26 C -0.063 4.063 27 C -0.156 4.156 28 C 0.075 3.925 29 N -0.528 5.528 30 C 0.076 3.924 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.031 0.969 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.037 0.963 46 H -0.020 1.020 47 H 0.004 0.996 48 H 0.017 0.983 49 H 0.235 0.765 50 H 0.177 0.823 51 H 0.180 0.820 52 H 0.174 0.826 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 11.220 22.761 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C -0.192 4.192 4 C -0.064 4.064 5 H 0.146 0.854 6 C 0.295 3.705 7 O -0.364 6.364 8 N -0.356 5.356 9 C -0.026 4.026 10 C -0.154 4.154 11 C -0.157 4.157 12 C 0.014 3.986 13 H 0.060 0.940 14 C 0.013 3.987 15 N -0.314 5.314 16 C 0.065 3.935 17 C -0.304 4.304 18 H 0.090 0.910 19 C -0.247 4.247 20 N -0.599 5.599 21 Si 0.748 3.252 22 H -0.243 1.243 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.121 4.121 26 C -0.089 4.089 27 C -0.176 4.176 28 C -0.082 4.082 29 N -0.237 5.237 30 C -0.079 4.079 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.056 0.944 46 H -0.001 1.001 47 H 0.022 0.978 48 H 0.036 0.964 49 H 0.045 0.955 50 H 0.194 0.806 51 H 0.197 0.803 52 H 0.191 0.809 53 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.491 10.775 21.195 23.782 hybrid contribution 0.057 0.317 -1.434 1.470 sum 0.548 11.092 19.761 22.668 Atomic orbital electron populations 1.21764 0.93816 1.01833 1.01946 1.20935 0.96994 0.96209 0.95947 1.21774 0.99988 0.94368 1.03039 1.20267 0.91467 0.93273 1.01385 0.85379 1.20076 0.80826 0.87474 0.82091 1.90863 1.40460 1.74397 1.30727 1.48417 1.66924 1.07553 1.12660 1.22574 0.98522 0.99676 0.81825 1.22732 1.02764 0.92562 0.97363 1.22604 1.02836 0.98782 0.91451 1.22171 0.98194 0.81637 0.96571 0.94001 1.21298 0.96638 0.95567 0.85181 1.43774 1.24791 1.48578 1.14276 1.20044 0.86248 0.95078 0.92164 1.19337 1.14926 1.07383 0.88733 0.90982 1.25283 1.02328 0.99168 0.97971 1.70136 1.52410 1.34036 1.03270 0.86294 0.80339 0.81866 0.76732 1.24254 1.20595 1.19758 1.20473 0.95302 1.00869 0.95448 1.21892 0.95133 0.94979 0.96857 1.22486 0.94654 1.00280 1.00132 1.23345 1.01653 0.94347 0.88845 1.67675 1.10427 1.14641 1.30946 1.22858 0.89991 0.95744 0.99338 0.90279 0.93295 0.93737 0.95040 0.94302 0.92687 0.89418 0.89020 0.92325 0.90049 0.87382 0.89078 0.90554 0.94347 0.94396 1.00139 0.97759 0.96372 0.95528 0.80616 0.80265 0.80882 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.97 71.98 0.65 -3.61 16 2 C -0.08 -2.79 1.80 -10.80 -0.02 -2.81 16 3 C -0.13 -3.62 8.89 71.98 0.64 -2.98 16 4 C -0.04 -1.28 1.38 -12.29 -0.02 -1.30 16 5 H 0.13 2.75 7.24 -2.39 -0.02 2.74 16 6 C 0.51 19.29 4.38 87.66 0.38 19.68 16 7 O -0.49 -24.04 8.55 -3.01 -0.03 -24.07 16 8 N -0.62 -19.61 3.07 -787.23 -2.42 -22.03 16 9 C 0.10 1.91 5.53 86.80 0.48 2.39 16 10 C -0.12 -1.74 7.08 31.99 0.23 -1.51 16 11 C -0.12 -2.49 6.48 31.78 0.21 -2.29 16 12 C 0.12 3.98 3.19 45.34 0.14 4.12 16 13 H 0.04 1.56 7.68 -2.38 -0.02 1.54 16 14 C 0.14 5.96 5.25 86.38 0.45 6.41 16 15 N -0.59 -31.65 1.68 -726.94 -1.22 -32.87 16 16 C 0.21 11.77 7.78 127.77 0.99 12.77 16 17 C -0.17 -9.95 5.85 84.03 0.49 -9.46 16 18 H 0.07 4.03 3.70 -2.91 -0.01 4.02 16 19 C -0.06 -3.47 5.09 84.86 0.43 -3.04 16 20 N -0.95 -62.90 10.89 21.65 0.24 -62.67 16 21 Si 0.91 51.84 26.23 68.60 1.80 53.64 16 22 H -0.31 -18.28 7.11 99.48 0.71 -17.57 16 23 H -0.28 -15.27 5.75 99.48 0.57 -14.70 16 24 H -0.27 -15.31 7.11 99.48 0.71 -14.60 16 25 C -0.12 -3.63 3.03 -19.77 -0.06 -3.69 16 26 C -0.06 -1.27 8.34 22.47 0.19 -1.09 16 27 C -0.16 -2.96 10.11 22.36 0.23 -2.73 16 28 C 0.08 2.04 11.18 84.69 0.95 2.99 16 29 N -0.53 -20.83 10.36 -195.84 -2.03 -22.86 16 30 C 0.08 3.11 7.19 84.67 0.61 3.72 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.66 6.05 -2.39 -0.01 1.65 16 34 H 0.03 1.45 5.99 -2.39 -0.01 1.43 16 35 H 0.04 1.13 6.81 -2.39 -0.02 1.12 16 36 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.31 7.32 -2.39 -0.02 1.29 16 39 H 0.06 1.19 7.43 -2.39 -0.02 1.17 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 1.59 7.84 -2.39 -0.02 1.58 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.04 1.66 7.94 -2.39 -0.02 1.64 16 46 H -0.02 -1.19 7.68 -2.39 -0.02 -1.21 16 47 H 0.00 0.21 7.60 -2.39 -0.02 0.19 16 48 H 0.02 1.11 6.63 -2.39 -0.02 1.10 16 49 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 50 H 0.18 1.90 8.02 -2.90 -0.02 1.88 16 51 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 52 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 53 H 0.13 6.26 1.21 -2.91 0.00 6.25 16 Total: -1.00 -86.19 380.99 4.08 -82.11 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.77 Total: 11.17 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.97 Total: 17.57 kcal Atomic # 7 Polarization: -134.99 SS G_CDS: -5.43 Total: -140.42 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.03 Total: -24.07 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.80 Total: 53.64 kcal Total: -86.19 4.08 -82.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570543486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.096 kcal (2) G-P(sol) polarization free energy of solvation -86.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds