Wall clock time and date at job start Wed Apr 1 2020 03:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 C 1.53004 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46751 * 306.04106 * 4 3 2 6 6 C 1.50703 * 109.47158 * 186.04207 * 4 3 2 7 7 O 1.21278 * 120.00156 * 242.69404 * 6 4 3 8 8 N 1.34783 * 119.99620 * 62.69500 * 6 4 3 9 9 C 1.46923 * 120.63350 * 4.56100 * 8 6 4 10 10 C 1.53620 * 108.54150 * 126.37027 * 9 8 6 11 11 C 1.53036 * 109.24318 * 54.85741 * 10 9 8 12 12 N 1.46500 * 109.45000 * 178.49387 * 11 10 9 13 13 C 1.46503 * 119.99872 * 60.06231 * 12 11 10 14 14 C 1.36935 * 120.00549 * 240.06053 * 12 11 10 15 15 H 1.08006 * 119.99515 * 24.50137 * 14 12 11 16 16 C 1.38803 * 120.00267 * 204.50281 * 14 12 11 17 17 N 1.31618 * 120.00391 * 7.58878 * 16 14 12 18 18 Si 1.86806 * 119.99965 * 187.58305 * 16 14 12 19 19 H 1.48509 * 109.46859 * 90.00209 * 18 16 14 20 20 H 1.48503 * 109.47085 * 210.00041 * 18 16 14 21 21 H 1.48498 * 109.47314 * 330.00085 * 18 16 14 22 22 C 1.53040 * 109.53783 * 298.50756 * 11 10 9 23 23 C 1.46924 * 120.62533 * 184.84205 * 8 6 4 24 24 C 1.50698 * 109.47103 * 66.04105 * 4 3 2 25 25 C 1.38227 * 119.61393 * 85.00388 * 24 4 3 26 26 C 1.38636 * 119.15593 * 179.97438 * 25 24 4 27 27 C 1.38675 * 118.42243 * 359.97438 * 26 25 24 28 28 C 1.38176 * 119.16152 * 0.28479 * 27 26 25 29 29 N 1.31850 * 119.61811 * 264.97814 * 24 4 3 30 30 H 1.09005 * 109.46725 * 60.00000 * 1 2 3 31 31 H 1.08999 * 109.46915 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47208 * 299.99989 * 1 2 3 33 33 H 1.08999 * 109.47208 * 240.00011 * 2 1 3 34 34 H 1.08999 * 109.46990 * 120.00375 * 2 1 3 35 35 H 1.08999 * 109.47152 * 59.99977 * 3 2 1 36 36 H 1.08991 * 109.47295 * 299.99838 * 3 2 1 37 37 H 1.09002 * 109.58503 * 246.20694 * 9 8 6 38 38 H 1.08998 * 109.58670 * 6.62673 * 9 8 6 39 39 H 1.08995 * 109.63575 * 294.86215 * 10 9 8 40 40 H 1.09010 * 109.43016 * 174.72454 * 10 9 8 41 41 H 1.09001 * 109.46339 * 58.53092 * 11 10 9 42 42 H 1.09003 * 109.47394 * 95.09049 * 13 12 11 43 43 H 1.08998 * 109.46874 * 215.09223 * 13 12 11 44 44 H 1.09001 * 109.47016 * 335.09216 * 13 12 11 45 45 H 0.96999 * 120.00227 * 180.02562 * 17 16 14 46 46 H 1.08992 * 109.50005 * 301.41444 * 22 11 10 47 47 H 1.09003 * 109.52298 * 181.33003 * 22 11 10 48 48 H 1.09000 * 109.58652 * 353.37466 * 23 8 6 49 49 H 1.09001 * 109.58795 * 113.65493 * 23 8 6 50 50 H 1.07991 * 120.42436 * 359.95316 * 25 24 4 51 51 H 1.08004 * 120.78728 * 179.97438 * 26 25 24 52 52 H 1.07995 * 120.41692 * 180.02562 * 27 26 25 53 53 H 1.08004 * 119.61705 * 179.69878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8380 0.8319 6 6 4.0723 2.8555 0.1502 7 8 4.7291 3.3624 -0.7344 8 7 3.7916 3.5557 1.2671 9 6 3.0834 2.9239 2.3887 10 6 3.9117 3.1276 3.6663 11 6 4.1851 4.6211 3.8575 12 7 4.9441 4.8238 5.0940 13 6 6.2599 4.2003 5.2563 14 6 4.4239 5.5959 6.0981 15 1 3.3550 5.7277 6.1793 16 6 5.2702 6.2092 7.0115 17 7 6.5731 6.1737 6.8283 18 14 4.5600 7.0851 8.5009 19 1 4.4425 6.1267 9.6293 20 1 5.4563 8.2027 8.8919 21 1 3.2167 7.6219 8.1655 22 6 4.9937 5.1495 2.6704 23 6 4.1826 4.9672 1.3837 24 6 4.0729 0.8654 -1.2974 25 6 4.2024 1.6835 -2.4040 26 6 4.6664 1.1427 -3.5932 27 6 4.9847 -0.2066 -3.6249 28 6 4.8244 -0.9633 -2.4799 29 7 4.3847 -0.4140 -1.3643 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 2.1030 3.3851 2.5080 38 1 2.9667 1.8580 2.1932 39 1 4.8575 2.5929 3.5788 40 1 3.3559 2.7468 4.5233 41 1 3.2388 5.1584 3.9202 42 1 7.0362 4.9108 4.9721 43 1 6.3978 3.9087 6.2974 44 1 6.3247 3.3177 4.6200 45 1 7.1645 6.6020 7.4669 46 1 5.9293 4.5958 2.5923 47 1 5.2085 6.2079 2.8182 48 1 4.7914 5.2498 0.5248 49 1 3.2901 5.5918 1.4202 50 1 3.9450 2.7305 -2.3431 51 1 4.7773 1.7578 -4.4741 52 1 5.3494 -0.6612 -4.5341 53 1 5.0654 -2.0159 -2.4976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571333720.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:54 Heat of formation + Delta-G solvation = 5.900254 kcal Electronic energy + Delta-G solvation = -31433.374610 eV Core-core repulsion = 27497.928257 eV Total energy + Delta-G solvation = -3935.446353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.01784 -40.64322 -38.96503 -36.94910 -36.61851 -33.93252 -33.37904 -33.05778 -32.08295 -31.48633 -29.93628 -28.03434 -26.74829 -25.68432 -24.54443 -24.29330 -23.92737 -23.01081 -21.87886 -21.06523 -19.80458 -18.76979 -18.34450 -17.72072 -17.28665 -16.96742 -16.84626 -16.31340 -16.21629 -15.76859 -15.62259 -15.26264 -15.13472 -14.92270 -14.66732 -14.43184 -14.36202 -14.15721 -14.00700 -13.76076 -13.68875 -13.37076 -13.12143 -13.06708 -12.86207 -12.72808 -12.64792 -12.43286 -12.30211 -12.18141 -12.05401 -12.02791 -11.94656 -11.80979 -11.58267 -11.44931 -11.20991 -10.84351 -10.62162 -10.47386 -10.33271 -9.81819 -9.65378 -8.73397 -7.79053 -5.29922 0.22372 0.43522 1.48161 1.48564 1.51349 1.57538 1.92042 2.52023 2.91024 3.22671 3.34104 3.34782 3.63741 3.86158 3.92065 3.97611 4.03530 4.11051 4.12045 4.18535 4.25737 4.30299 4.31686 4.36434 4.40579 4.50098 4.56461 4.68455 4.70997 4.74579 4.79971 4.82583 4.84351 4.91918 4.96178 4.97708 5.00512 5.07514 5.11840 5.26445 5.28128 5.29742 5.35156 5.37422 5.41033 5.51771 5.52426 5.61585 5.68587 5.74066 5.85412 6.36167 6.39426 7.04259 7.11520 7.18294 7.90643 8.36236 9.23766 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.002496 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.407317 B =11215.751354 C =11900.149493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.051 4.051 5 H 0.116 0.884 6 C 0.520 3.480 7 O -0.570 6.570 8 N -0.600 5.600 9 C 0.110 3.890 10 C -0.138 4.138 11 C 0.174 3.826 12 N -0.612 5.612 13 C 0.185 3.815 14 C -0.257 4.257 15 H 0.076 0.924 16 C -0.057 4.057 17 N -0.943 5.943 18 Si 0.969 3.031 19 H -0.287 1.287 20 H -0.300 1.300 21 H -0.265 1.265 22 C -0.132 4.132 23 C 0.125 3.875 24 C 0.121 3.879 25 C -0.152 4.152 26 C -0.093 4.093 27 C -0.169 4.169 28 C 0.078 3.922 29 N -0.495 5.495 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.068 0.932 42 H -0.004 1.004 43 H 0.013 0.987 44 H 0.021 0.979 45 H 0.245 0.755 46 H 0.037 0.963 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.139 0.861 51 H 0.151 0.849 52 H 0.163 0.837 53 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 -14.335 -20.043 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.142 4.142 4 C -0.073 4.073 5 H 0.134 0.866 6 C 0.308 3.692 7 O -0.451 6.451 8 N -0.331 5.331 9 C -0.012 4.012 10 C -0.178 4.178 11 C 0.068 3.932 12 N -0.334 5.334 13 C 0.040 3.960 14 C -0.387 4.387 15 H 0.094 0.906 16 C -0.252 4.252 17 N -0.591 5.591 18 Si 0.798 3.202 19 H -0.214 1.214 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.173 4.173 23 C 0.002 3.998 24 C -0.017 4.017 25 C -0.172 4.172 26 C -0.119 4.119 27 C -0.189 4.189 28 C -0.079 4.079 29 N -0.205 5.205 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.015 0.985 43 H 0.032 0.968 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.156 0.844 51 H 0.168 0.832 52 H 0.181 0.819 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.281 -14.508 -19.630 26.890 hybrid contribution 0.843 1.408 0.409 1.691 sum -10.438 -13.100 -19.220 25.495 Atomic orbital electron populations 1.21756 0.94696 1.02073 1.02186 1.21435 0.96375 0.95022 1.02355 1.21748 0.89143 0.99190 1.04114 1.20110 0.98879 0.91896 0.96373 0.86637 1.20677 0.78952 0.88160 0.81376 1.90622 1.40943 1.72040 1.41475 1.48141 1.57094 1.11854 1.16033 1.22205 0.95501 0.99747 0.83724 1.22402 1.00060 0.97494 0.97829 1.20533 0.94071 0.94396 0.84241 1.44182 1.18333 1.56545 1.14370 1.20386 0.86544 0.92412 0.96655 1.19614 0.91719 1.22042 1.05303 0.90582 1.25881 0.95838 1.00273 1.03191 1.70246 1.02800 1.48788 1.37246 0.85230 0.77708 0.77640 0.79641 1.21420 1.22657 1.18937 1.22288 0.98824 1.00613 0.95553 1.21522 0.99619 0.81340 0.97361 1.20569 0.96770 0.89868 0.94448 1.22450 0.99605 1.01649 0.93453 1.21961 0.95800 0.95998 0.98183 1.22466 1.00803 0.94587 1.01002 1.23176 0.95292 1.01475 0.87941 1.67376 1.11526 1.12246 1.29328 0.93001 0.92313 0.91682 0.93106 0.91195 0.88491 0.91605 0.88446 0.87257 0.93353 0.90292 0.91424 0.98542 0.96797 0.96051 0.94552 0.94459 0.92904 0.90436 0.89421 0.84377 0.83152 0.81944 0.80370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.11 -1.74 5.73 30.60 0.18 -1.57 16 3 C -0.10 -1.70 4.22 30.60 0.13 -1.57 16 4 C -0.05 -1.11 1.67 -12.28 -0.02 -1.13 16 5 H 0.12 2.48 7.35 -2.39 -0.02 2.46 16 6 C 0.52 13.94 6.86 87.66 0.60 14.55 16 7 O -0.57 -18.80 12.42 -3.02 -0.04 -18.83 16 8 N -0.60 -15.19 2.96 -818.07 -2.43 -17.61 16 9 C 0.11 2.31 4.81 86.51 0.42 2.72 16 10 C -0.14 -4.06 5.34 30.81 0.16 -3.90 16 11 C 0.17 6.50 2.55 45.02 0.11 6.61 16 12 N -0.61 -29.82 2.81 -702.63 -1.97 -31.80 16 13 C 0.19 9.36 8.01 127.77 1.02 10.38 16 14 C -0.26 -13.70 9.59 84.03 0.81 -12.89 16 15 H 0.08 3.85 7.81 -2.91 -0.02 3.83 16 16 C -0.06 -3.20 5.20 84.86 0.44 -2.76 16 17 N -0.94 -56.43 10.52 21.65 0.23 -56.20 16 18 Si 0.97 44.73 29.56 68.60 2.03 46.76 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 22 C -0.13 -4.76 5.34 30.67 0.16 -4.60 16 23 C 0.12 3.53 6.44 86.36 0.56 4.09 16 24 C 0.12 2.93 4.94 42.55 0.21 3.14 16 25 C -0.15 -3.67 8.29 22.36 0.19 -3.48 16 26 C -0.09 -1.77 10.18 22.47 0.23 -1.55 16 27 C -0.17 -2.67 10.11 22.36 0.23 -2.44 16 28 C 0.08 1.42 11.18 84.67 0.95 2.36 16 29 N -0.50 -11.54 9.63 -183.89 -1.77 -13.31 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.94 6.92 -2.39 -0.02 0.92 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.31 5.47 -2.39 -0.01 1.30 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.63 8.07 -2.39 -0.02 1.61 16 38 H 0.11 1.79 4.97 -2.39 -0.01 1.78 16 39 H 0.05 1.57 6.72 -2.39 -0.02 1.55 16 40 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.07 2.46 7.87 -2.39 -0.02 2.44 16 42 H 0.00 -0.21 7.33 -2.39 -0.02 -0.23 16 43 H 0.01 0.74 7.29 -2.39 -0.02 0.72 16 44 H 0.02 0.94 6.47 -2.39 -0.02 0.93 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.04 1.48 7.72 -2.39 -0.02 1.46 16 47 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.08 2.37 7.00 -2.39 -0.02 2.35 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.14 3.67 5.85 -2.92 -0.02 3.66 16 51 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 52 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 53 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.20 404.05 4.02 -66.19 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.89 Total: 17.99 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 7.08 Total: 6.83 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -5.94 Total: -118.92 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.20 4.02 -66.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571333720.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.087 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds