Wall clock time and date at job start Wed Apr 1 2020 04:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 H 1.08995 * 109.87685 * 55.24496 * 3 2 1 5 5 C 1.54324 * 109.88353 * 294.22826 * 3 2 1 6 6 H 1.08996 * 110.72262 * 336.93317 * 5 3 2 7 7 N 1.46504 * 110.72188 * 100.02645 * 5 3 2 8 8 C 1.34773 * 120.00375 * 202.56207 * 7 5 3 9 9 O 1.21285 * 119.99692 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00166 * 179.97438 * 8 7 5 11 11 H 1.08994 * 109.47094 * 32.77830 * 10 8 7 12 12 C 1.50702 * 109.47082 * 272.77783 * 10 8 7 13 13 C 1.38243 * 119.99975 * 286.01023 * 12 10 8 14 14 C 1.38230 * 119.99809 * 179.80805 * 13 12 10 15 15 C 1.38236 * 120.00325 * 0.39993 * 14 13 12 16 16 C 1.38233 * 119.99764 * 359.85851 * 15 14 13 17 17 C 1.38228 * 120.00133 * 106.28386 * 12 10 8 18 18 N 1.46903 * 109.47200 * 152.77693 * 10 8 7 19 19 C 1.46906 * 110.99933 * 173.91138 * 18 10 8 20 20 C 1.46892 * 110.99933 * 297.86893 * 18 10 8 21 21 C 1.55159 * 103.10424 * 218.47799 * 5 3 2 22 22 C 1.55120 * 101.48278 * 35.28271 * 21 5 3 23 23 N 1.47025 * 109.88611 * 176.42332 * 3 2 1 24 24 C 1.36940 * 125.64546 * 298.39586 * 23 3 2 25 25 H 1.08003 * 120.00081 * 347.42368 * 24 23 3 26 26 C 1.38813 * 120.00076 * 167.42943 * 24 23 3 27 27 N 1.31611 * 119.99836 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99844 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47013 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.46877 * 119.99937 * 28 26 24 31 31 H 1.48498 * 109.47004 * 239.99843 * 28 26 24 32 32 H 1.09003 * 109.47105 * 305.67363 * 1 2 3 33 33 H 1.08999 * 109.47443 * 65.67966 * 1 2 3 34 34 H 1.09007 * 109.46741 * 185.68150 * 1 2 3 35 35 H 1.08999 * 109.47193 * 240.00118 * 2 1 3 36 36 H 1.08998 * 109.47540 * 119.99988 * 2 1 3 37 37 H 0.97005 * 119.99841 * 22.55784 * 7 5 3 38 38 H 1.08000 * 119.99488 * 359.97438 * 13 12 10 39 39 H 1.07999 * 119.99669 * 180.23214 * 14 13 12 40 40 H 1.08000 * 119.99971 * 179.83175 * 15 14 13 41 41 H 1.07994 * 120.00195 * 179.97438 * 16 15 14 42 42 H 1.08002 * 120.00143 * 359.97438 * 17 12 10 43 43 H 1.08993 * 109.46813 * 183.95515 * 19 18 10 44 44 H 1.09002 * 109.46796 * 303.95522 * 19 18 10 45 45 H 1.09003 * 109.46666 * 63.95260 * 19 18 10 46 46 H 1.09007 * 109.47326 * 297.62024 * 20 18 10 47 47 H 1.08996 * 109.47811 * 57.61853 * 20 18 10 48 48 H 1.08999 * 109.47411 * 177.62144 * 20 18 10 49 49 H 1.09000 * 111.00347 * 153.48836 * 21 5 3 50 50 H 1.09001 * 111.00459 * 277.34057 * 21 5 3 51 51 H 1.08999 * 110.41768 * 204.29136 * 22 21 5 52 52 H 1.09004 * 110.30147 * 82.09328 * 22 21 5 53 53 H 0.97005 * 120.00338 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6125 1.9866 0.8422 5 6 1.6534 2.1358 -1.3234 6 1 1.4827 1.3997 -2.1090 7 7 0.4696 2.9793 -1.1402 8 6 -0.2975 3.3035 -2.1999 9 8 -0.0079 2.8966 -3.3052 10 6 -1.5154 4.1706 -2.0113 11 1 -1.3345 4.8807 -1.2045 12 6 -2.6991 3.3053 -1.6630 13 6 -3.3006 2.5318 -2.6381 14 6 -4.3838 1.7351 -2.3177 15 6 -4.8707 1.7180 -1.0241 16 6 -4.2726 2.4956 -0.0502 17 6 -3.1868 3.2893 -0.3697 18 7 -1.7928 4.9024 -3.2546 19 6 -3.0551 5.6476 -3.1564 20 6 -0.6792 5.7962 -3.5989 21 6 2.9002 3.0019 -1.6440 22 6 4.0474 2.0952 -1.1265 23 7 3.5076 1.4540 0.0863 24 6 4.2501 0.9516 1.1213 25 1 3.7697 0.6855 2.0513 26 6 5.6204 0.7843 0.9754 27 7 6.2058 1.1082 -0.1580 28 14 6.6334 0.0996 2.3876 29 1 5.7444 -0.1827 3.5431 30 1 7.2991 -1.1557 1.9562 31 1 7.6621 1.0936 2.7864 32 1 -0.3633 0.5993 0.8349 33 1 -0.3634 0.4232 -0.9364 34 1 -0.3633 -1.0227 0.1017 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 0.2378 3.3043 -0.2561 38 1 -2.9225 2.5480 -3.6497 39 1 -4.8514 1.1279 -3.0787 40 1 -5.7187 1.0976 -0.7744 41 1 -4.6532 2.4827 0.9604 42 1 -2.7194 3.8967 0.3913 43 1 -3.2715 6.1231 -4.1129 44 1 -3.8628 4.9619 -2.9004 45 1 -2.9672 6.4106 -2.3829 46 1 -0.5570 6.5434 -2.8147 47 1 0.2379 5.2147 -3.6927 48 1 -0.8919 6.2940 -4.5450 49 1 2.9895 3.1762 -2.7163 50 1 2.8720 3.9446 -1.0976 51 1 4.9241 2.6943 -0.8806 52 1 4.3006 1.3424 -1.8730 53 1 7.1634 0.9917 -0.2600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656764049.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:39 Heat of formation + Delta-G solvation = 7.072975 kcal Electronic energy + Delta-G solvation = -31963.700031 eV Core-core repulsion = 28028.304532 eV Total energy + Delta-G solvation = -3935.395500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.59514 -40.18682 -39.16599 -37.57378 -35.59599 -34.31342 -33.55220 -32.72158 -31.72935 -30.87143 -29.04919 -28.22448 -27.74008 -26.29450 -24.07345 -23.64508 -23.24435 -22.68855 -21.96407 -21.50648 -20.64598 -18.77485 -18.27519 -17.79899 -17.54970 -16.83192 -16.55994 -16.41208 -15.83531 -15.67599 -15.55742 -15.34733 -15.24588 -15.08687 -14.74662 -14.38811 -14.21890 -14.00706 -13.79516 -13.62355 -13.56282 -13.34183 -13.22849 -13.13895 -12.91941 -12.84249 -12.72075 -12.62797 -12.49823 -12.21103 -12.03525 -11.97185 -11.91337 -11.89787 -11.84827 -11.56809 -11.37286 -10.90995 -10.68861 -9.97341 -9.76041 -9.58889 -9.33942 -8.84674 -7.84118 -5.22340 0.38048 0.56300 1.47343 1.48328 1.58327 1.65426 2.01422 2.51185 2.80922 3.11021 3.35292 3.54826 3.66902 3.83542 3.88026 3.89542 3.95874 4.17527 4.18591 4.23676 4.32178 4.35505 4.36133 4.40497 4.42903 4.60109 4.63308 4.64288 4.67596 4.69548 4.74420 4.77570 4.86579 4.99845 5.01802 5.03260 5.08118 5.15069 5.17690 5.22375 5.30294 5.45608 5.50490 5.56894 5.59201 5.63329 5.66493 5.68420 5.72389 5.90787 6.03348 6.14456 6.23477 6.61086 7.09369 7.29765 7.77028 8.43671 9.26538 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.003035 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.250878 B = 9224.316721 C =10406.444230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 C 0.161 3.839 4 H 0.053 0.947 5 C 0.161 3.839 6 H 0.071 0.929 7 N -0.702 5.702 8 C 0.524 3.476 9 O -0.559 6.559 10 C 0.118 3.882 11 H 0.086 0.914 12 C -0.092 4.092 13 C -0.099 4.099 14 C -0.133 4.133 15 C -0.117 4.117 16 C -0.123 4.123 17 C -0.111 4.111 18 N -0.538 5.538 19 C 0.029 3.971 20 C 0.024 3.976 21 C -0.140 4.140 22 C 0.181 3.819 23 N -0.613 5.613 24 C -0.230 4.230 25 H 0.084 0.916 26 C -0.064 4.064 27 N -0.950 5.950 28 Si 0.975 3.025 29 H -0.263 1.263 30 H -0.296 1.296 31 H -0.293 1.293 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.410 0.590 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.038 0.962 46 H 0.039 0.961 47 H 0.049 0.951 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.046 0.954 52 H -0.010 1.010 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.060 8.534 -0.440 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.054 3.946 4 H 0.070 0.930 5 C 0.055 3.945 6 H 0.089 0.911 7 N -0.354 5.354 8 C 0.310 3.690 9 O -0.436 6.436 10 C 0.006 3.994 11 H 0.103 0.897 12 C -0.092 4.092 13 C -0.117 4.117 14 C -0.151 4.151 15 C -0.135 4.135 16 C -0.141 4.141 17 C -0.129 4.129 18 N -0.263 5.263 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.180 4.180 22 C 0.056 3.944 23 N -0.337 5.337 24 C -0.359 4.359 25 H 0.102 0.898 26 C -0.257 4.257 27 N -0.599 5.599 28 Si 0.804 3.196 29 H -0.187 1.187 30 H -0.224 1.224 31 H -0.220 1.220 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.247 0.753 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.064 0.936 52 H 0.008 0.992 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.691 7.870 -1.562 25.962 hybrid contribution 1.454 0.046 1.090 1.817 sum -23.238 7.916 -0.472 24.553 Atomic orbital electron populations 1.21595 0.93832 1.01749 1.01496 1.21902 0.96396 0.97757 1.00495 1.21225 0.84426 0.94459 0.94489 0.92954 1.21579 0.84019 0.91857 0.97062 0.91059 1.45846 1.26489 1.51895 1.11126 1.20679 0.83559 0.80753 0.84028 1.90688 1.72371 1.54532 1.25981 1.20431 0.90962 0.94605 0.93359 0.89659 1.19320 0.96117 0.99070 0.94736 1.21056 0.95824 0.95569 0.99291 1.21376 0.96789 0.99194 0.97739 1.21503 1.00262 0.98862 0.92833 1.21407 0.95882 0.96279 1.00485 1.21271 0.96960 0.99684 0.95006 1.61658 1.04395 1.28988 1.31278 1.22444 0.90406 0.96918 1.02092 1.22410 0.93464 0.94890 1.01583 1.23250 0.95678 0.98731 1.00294 1.21191 0.93932 0.92398 0.86920 1.44694 1.00576 1.68666 1.19801 1.19360 0.89796 1.34476 0.92238 0.89832 1.25684 0.98312 1.02213 0.99510 1.70149 1.09314 1.54499 1.25920 0.85059 0.78582 0.77095 0.78907 1.18685 1.22381 1.22018 0.91483 0.93793 0.92416 0.94815 0.93066 0.75336 0.87204 0.85018 0.83991 0.83589 0.84028 0.90183 0.91070 0.94395 0.94213 0.93254 0.89819 0.91753 0.90798 0.93602 0.99217 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.60 71.98 0.69 -2.95 16 2 C -0.13 -4.66 5.41 30.59 0.17 -4.50 16 3 C 0.16 6.26 2.94 45.34 0.13 6.39 16 4 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 5 C 0.16 5.76 1.99 46.18 0.09 5.85 16 6 H 0.07 2.91 7.27 -2.39 -0.02 2.89 16 7 N -0.70 -19.28 4.95 -436.91 -2.16 -21.44 16 8 C 0.52 15.02 5.90 87.66 0.52 15.54 16 9 O -0.56 -20.90 15.38 -3.05 -0.05 -20.95 16 10 C 0.12 2.53 2.07 43.42 0.09 2.62 16 11 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 12 C -0.09 -1.82 3.50 -19.87 -0.07 -1.89 16 13 C -0.10 -2.17 8.27 22.27 0.18 -1.99 16 14 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 15 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 16 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 17 C -0.11 -1.71 9.67 22.27 0.22 -1.50 16 18 N -0.54 -11.69 4.12 -932.22 -3.84 -15.53 16 19 C 0.03 0.46 9.21 127.69 1.18 1.63 16 20 C 0.02 0.51 9.28 127.69 1.19 1.70 16 21 C -0.14 -5.53 6.79 32.06 0.22 -5.31 16 22 C 0.18 9.14 5.45 86.93 0.47 9.61 16 23 N -0.61 -30.61 3.13 -667.86 -2.09 -32.70 16 24 C -0.23 -12.46 9.75 84.03 0.82 -11.64 16 25 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 26 C -0.06 -3.60 5.47 84.86 0.46 -3.13 16 27 N -0.95 -57.12 10.49 21.65 0.23 -56.90 16 28 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 29 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 30 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 31 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.30 7.44 -2.39 -0.02 1.28 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.03 1.38 8.06 -2.39 -0.02 1.36 16 36 H 0.05 2.02 7.89 -2.39 -0.02 2.00 16 37 H 0.41 8.93 8.34 -92.70 -0.77 8.16 16 38 H 0.11 2.88 7.91 -2.91 -0.02 2.86 16 39 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.14 1.55 7.99 -2.91 -0.02 1.52 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.07 1.18 6.10 -2.39 -0.01 1.16 16 45 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.05 1.33 6.49 -2.39 -0.02 1.32 16 48 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 51 H 0.05 2.58 6.78 -2.39 -0.02 2.56 16 52 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 53 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -70.52 417.81 1.25 -69.27 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.11 Total: 25.60 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 7.03 Total: 5.34 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -7.86 Total: -126.57 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.52 1.25 -69.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656764049.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.340 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds