Wall clock time and date at job start Wed Apr 1 2020 03:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47108 * 2 1 4 4 C 1.53001 * 109.46933 * 119.99985 * 2 1 3 5 5 H 1.09007 * 109.47141 * 306.42483 * 4 2 1 6 6 C 1.50698 * 109.47198 * 66.42400 * 4 2 1 7 7 O 1.21272 * 120.00239 * 112.02571 * 6 4 2 8 8 N 1.34782 * 119.99836 * 292.02652 * 6 4 2 9 9 C 1.46498 * 120.00091 * 175.62527 * 8 6 4 10 10 C 1.52995 * 109.47507 * 184.42656 * 9 8 6 11 11 H 1.09002 * 109.58438 * 53.65369 * 10 9 8 12 12 C 1.53197 * 109.58669 * 293.23577 * 10 9 8 13 13 C 1.53042 * 109.31303 * 185.57760 * 12 10 9 14 14 C 1.53042 * 109.54039 * 61.35735 * 13 12 10 15 15 C 1.53186 * 109.31230 * 298.64054 * 14 13 12 16 16 N 1.46922 * 109.58842 * 173.94388 * 10 9 8 17 17 C 1.36934 * 120.63155 * 353.41471 * 16 10 9 18 18 H 1.07999 * 119.99823 * 33.54156 * 17 16 10 19 19 C 1.38813 * 120.00076 * 213.53849 * 17 16 10 20 20 N 1.31611 * 120.00344 * 8.44759 * 19 17 16 21 21 Si 1.86799 * 119.99715 * 188.45227 * 19 17 16 22 22 H 1.48499 * 109.47390 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47182 * 119.99903 * 21 19 17 24 24 H 1.48507 * 109.47179 * 239.99685 * 21 19 17 25 25 C 1.50701 * 109.47060 * 186.42234 * 4 2 1 26 26 C 1.38675 * 120.41483 * 119.72067 * 25 4 2 27 27 C 1.38630 * 118.42031 * 179.78045 * 26 25 4 28 28 C 1.38230 * 119.15634 * 0.51554 * 27 26 25 29 29 N 1.31853 * 120.76611 * 359.72404 * 28 27 26 30 30 C 1.31888 * 121.72503 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.46898 * 300.03768 * 1 2 3 32 32 H 1.09003 * 109.46679 * 60.03005 * 1 2 3 33 33 H 1.08991 * 109.47512 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47152 * 240.00140 * 2 1 3 35 35 H 1.09006 * 109.46733 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47293 * 300.00013 * 3 2 1 37 37 H 1.09003 * 109.46726 * 60.00281 * 3 2 1 38 38 H 0.97001 * 119.99864 * 355.35452 * 8 6 4 39 39 H 1.08996 * 109.47242 * 304.43206 * 9 8 6 40 40 H 1.09001 * 109.46787 * 64.42832 * 9 8 6 41 41 H 1.09006 * 109.49537 * 305.52025 * 12 10 9 42 42 H 1.08993 * 109.50199 * 65.62013 * 12 10 9 43 43 H 1.09000 * 109.45837 * 301.33930 * 13 12 10 44 44 H 1.09000 * 109.44687 * 181.37497 * 13 12 10 45 45 H 1.08991 * 109.49846 * 178.68281 * 14 13 12 46 46 H 1.09007 * 109.49221 * 58.59100 * 14 13 12 47 47 H 1.08996 * 109.58785 * 294.84320 * 15 14 13 48 48 H 1.09005 * 109.70152 * 174.49184 * 15 14 13 49 49 H 0.97002 * 120.00577 * 180.02562 * 20 19 17 50 50 H 1.07997 * 120.79308 * 0.02606 * 26 25 4 51 51 H 1.07994 * 120.42513 * 180.26411 * 27 26 25 52 52 H 1.08000 * 119.61971 * 179.70353 * 28 27 26 53 53 H 1.07999 * 119.61342 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5857 -0.2781 2.1356 6 6 1.6716 -2.1805 1.1724 7 8 2.5380 -3.0183 1.0374 8 7 0.3793 -2.5545 1.2536 9 6 0.0120 -3.9624 1.0830 10 6 -1.5115 -4.0991 1.1109 11 1 -1.9524 -3.4249 0.3767 12 6 -2.0328 -3.7521 2.5091 13 6 -3.5376 -4.0242 2.5702 14 6 -3.8002 -5.5095 2.3115 15 6 -3.2989 -5.8763 0.9112 16 7 -1.8876 -5.4841 0.7963 17 6 -0.9409 -6.3922 0.4036 18 1 0.0606 -6.3353 0.8039 19 6 -1.2683 -7.3857 -0.5088 20 7 -2.4326 -7.3585 -1.1218 21 14 -0.0564 -8.7616 -0.8663 22 1 1.1707 -8.5640 -0.0537 23 1 -0.6741 -10.0673 -0.5216 24 1 0.2978 -8.7469 -2.3084 25 6 3.5386 -0.5851 1.3313 26 6 4.1283 0.0373 2.4212 27 6 5.5107 0.1358 2.4564 28 6 6.2493 -0.3764 1.4063 29 7 5.6541 -0.9576 0.3833 30 6 4.3419 -1.0734 0.3187 31 1 -0.3633 0.5144 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8901 38 1 -0.3072 -1.8920 1.4289 39 1 0.3919 -4.3238 0.1275 40 1 0.4445 -4.5512 1.8920 41 1 -1.5218 -4.3663 3.2506 42 1 -1.8448 -2.6987 2.7164 43 1 -4.0454 -3.4283 1.8118 44 1 -3.9153 -3.7549 3.5565 45 1 -4.8700 -5.7069 2.3783 46 1 -3.2724 -6.1070 3.0550 47 1 -3.8875 -5.3469 0.1621 48 1 -3.3931 -6.9513 0.7571 49 1 -2.6616 -8.0530 -1.7592 50 1 3.5253 0.4324 3.2253 51 1 6.0040 0.6104 3.2917 52 1 7.3264 -0.2995 1.4238 53 1 3.8901 -1.5555 -0.5356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661886301.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:40 Heat of formation + Delta-G solvation = -13.234973 kcal Electronic energy + Delta-G solvation = -31534.327056 eV Core-core repulsion = 27598.050937 eV Total energy + Delta-G solvation = -3936.276118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.87085 -40.49359 -39.36878 -37.24376 -35.98035 -34.94018 -33.44999 -32.60722 -32.28572 -31.56896 -29.00933 -27.90960 -27.32221 -26.47764 -24.58361 -23.89275 -23.50737 -22.42708 -21.76958 -20.96540 -20.72192 -18.75289 -18.17992 -17.97308 -17.28771 -16.95015 -16.78425 -16.37910 -16.04850 -15.78432 -15.57087 -15.23023 -15.05695 -14.93813 -14.63538 -14.44301 -14.34775 -14.14050 -13.97257 -13.90530 -13.75636 -13.51508 -13.30211 -12.96662 -12.91847 -12.82748 -12.77599 -12.51158 -12.41689 -12.02597 -12.01001 -11.82865 -11.80911 -11.67190 -11.54190 -11.17224 -11.00285 -10.93387 -10.58202 -10.55653 -10.35301 -10.02094 -9.85441 -8.58557 -7.88863 -5.40832 0.19248 0.40556 1.38995 1.42640 1.51767 1.61256 2.15897 2.47602 2.92701 3.26852 3.39852 3.58757 3.70036 3.73980 3.85941 3.94966 4.05786 4.11655 4.12858 4.14217 4.21777 4.23468 4.36293 4.39115 4.48302 4.51953 4.61799 4.67688 4.73220 4.81109 4.85578 4.88648 4.92574 4.99653 5.03526 5.10909 5.12440 5.18010 5.21593 5.24133 5.28948 5.31554 5.38201 5.42488 5.42940 5.44090 5.48995 5.62920 5.69019 5.82465 5.83340 6.41416 6.57273 7.08322 7.16137 7.27542 7.84745 8.35880 9.15722 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.003107 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.830372 B = 9009.645048 C =10338.524741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.135 4.135 4 C -0.047 4.047 5 H 0.141 0.859 6 C 0.511 3.489 7 O -0.583 6.583 8 N -0.707 5.707 9 C 0.145 3.855 10 C 0.165 3.835 11 H 0.031 0.969 12 C -0.121 4.121 13 C -0.104 4.104 14 C -0.136 4.136 15 C 0.179 3.821 16 N -0.602 5.602 17 C -0.255 4.255 18 H 0.059 0.941 19 C -0.039 4.039 20 N -0.929 5.929 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.292 1.292 25 C -0.118 4.118 26 C -0.070 4.070 27 C -0.168 4.168 28 C 0.077 3.923 29 N -0.523 5.523 30 C 0.110 3.890 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.415 0.585 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.045 0.955 47 H -0.001 1.001 48 H 0.049 0.951 49 H 0.250 0.750 50 H 0.169 0.831 51 H 0.171 0.829 52 H 0.175 0.825 53 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 23.301 10.479 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.099 4.099 3 C -0.193 4.193 4 C -0.069 4.069 5 H 0.159 0.841 6 C 0.298 3.702 7 O -0.462 6.462 8 N -0.362 5.362 9 C 0.021 3.979 10 C 0.059 3.941 11 H 0.049 0.951 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.175 4.175 15 C 0.053 3.947 16 N -0.327 5.327 17 C -0.386 4.386 18 H 0.076 0.924 19 C -0.236 4.236 20 N -0.575 5.575 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.219 1.219 25 C -0.121 4.121 26 C -0.095 4.095 27 C -0.187 4.187 28 C -0.079 4.079 29 N -0.232 5.232 30 C -0.047 4.047 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.256 0.744 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.017 0.983 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.186 0.814 51 H 0.188 0.812 52 H 0.192 0.808 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.578 22.251 9.564 25.096 hybrid contribution -0.156 -1.252 -0.328 1.303 sum 6.422 20.999 9.236 23.822 Atomic orbital electron populations 1.22190 0.93193 1.02527 1.04349 1.21041 0.97165 0.97079 0.94622 1.21768 1.00319 0.93731 1.03446 1.20412 0.92353 0.90662 1.03452 0.84102 1.21111 0.82036 0.91812 0.75264 1.90733 1.49772 1.55094 1.50642 1.46183 1.08306 1.09538 1.72162 1.21073 0.95638 0.81389 0.99840 1.20714 0.91160 0.86733 0.95470 0.95144 1.21996 0.96552 1.01267 0.96225 1.21374 0.95655 0.95303 1.01793 1.22058 0.99960 0.97496 0.97985 1.20605 0.83053 0.98757 0.92250 1.44150 1.04310 1.05373 1.78880 1.19317 0.93529 1.07887 1.17853 0.92358 1.25780 0.98477 1.02664 0.96631 1.70100 1.22885 1.34946 1.29526 0.85430 0.79214 0.79923 0.77294 1.20086 1.21125 1.21902 1.20362 0.95325 1.00115 0.96277 1.21888 0.95699 0.95320 0.96635 1.22476 0.94524 1.01145 1.00593 1.23283 1.01816 0.93393 0.89455 1.67641 1.12054 1.15794 1.27734 1.22350 0.89201 0.94975 0.98152 0.89209 0.91219 0.92963 0.92995 0.93880 0.91657 0.90126 0.74448 0.94239 0.93813 0.93264 0.89365 0.92127 0.90320 0.91499 0.93656 0.98299 0.93254 0.94110 0.81380 0.81199 0.80792 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 8.35 71.98 0.60 -1.75 16 2 C -0.08 -1.37 2.24 -10.79 -0.02 -1.39 16 3 C -0.14 -1.75 8.85 71.98 0.64 -1.11 16 4 C -0.05 -0.91 2.04 -12.29 -0.03 -0.93 16 5 H 0.14 1.63 7.93 -2.38 -0.02 1.61 16 6 C 0.51 15.11 6.91 87.66 0.61 15.72 16 7 O -0.58 -23.74 14.86 -3.00 -0.04 -23.78 16 8 N -0.71 -19.72 4.18 -463.08 -1.94 -21.65 16 9 C 0.15 5.61 3.85 86.38 0.33 5.94 16 10 C 0.17 6.32 2.99 44.98 0.13 6.46 16 11 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 12 C -0.12 -3.57 5.19 30.67 0.16 -3.42 16 13 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 14 C -0.14 -4.86 6.08 30.67 0.19 -4.67 16 15 C 0.18 8.44 5.24 86.36 0.45 8.89 16 16 N -0.60 -29.48 2.98 -675.25 -2.01 -31.49 16 17 C -0.26 -14.16 8.37 84.03 0.70 -13.45 16 18 H 0.06 3.30 6.44 -2.91 -0.02 3.28 16 19 C -0.04 -2.24 5.08 84.86 0.43 -1.81 16 20 N -0.93 -55.09 11.09 21.65 0.24 -54.85 16 21 Si 0.95 46.96 29.56 68.60 2.03 48.99 16 22 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 25 C -0.12 -2.63 2.95 -19.77 -0.06 -2.69 16 26 C -0.07 -1.12 9.81 22.47 0.22 -0.90 16 27 C -0.17 -2.57 10.11 22.36 0.23 -2.34 16 28 C 0.08 1.59 11.18 84.69 0.95 2.54 16 29 N -0.52 -15.06 10.36 -195.85 -2.03 -17.09 16 30 C 0.11 3.17 9.01 84.67 0.76 3.94 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.96 5.15 -2.39 -0.01 0.95 16 34 H 0.05 1.17 7.64 -2.39 -0.02 1.15 16 35 H 0.04 0.68 6.96 -2.38 -0.02 0.66 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.42 8.38 5.41 -92.71 -0.50 7.88 16 39 H 0.04 1.86 7.30 -2.39 -0.02 1.85 16 40 H 0.04 1.87 7.76 -2.39 -0.02 1.85 16 41 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.09 1.87 7.35 -2.39 -0.02 1.85 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 46 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.05 2.68 6.20 -2.38 -0.01 2.67 16 49 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 50 H 0.17 1.42 8.00 -2.91 -0.02 1.40 16 51 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 52 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 53 H 0.12 4.06 7.43 -2.91 -0.02 4.04 16 Total: -1.00 -76.81 406.08 3.11 -73.69 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.39 Total: 19.93 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.47 Total: 6.25 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.74 Total: -125.08 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.04 Total: -23.78 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -76.81 3.11 -73.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661886301.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.460 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds