Wall clock time and date at job start Wed Apr 1 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 N 1.46500 * 109.46864 * 120.00071 * 2 1 3 5 5 C 1.36933 * 120.00009 * 302.23385 * 4 2 1 6 6 H 1.08004 * 120.00345 * 321.92170 * 5 4 2 7 7 C 1.38814 * 119.99843 * 141.91790 * 5 4 2 8 8 N 1.31627 * 120.00051 * 338.45345 * 7 5 4 9 9 Si 1.86799 * 120.00107 * 158.45434 * 7 5 4 10 10 H 1.48497 * 109.47290 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47237 * 119.99876 * 9 7 5 12 12 H 1.48500 * 109.46899 * 239.99671 * 9 7 5 13 13 C 1.46503 * 119.99684 * 122.24130 * 4 2 1 14 14 C 1.52996 * 109.47222 * 89.99781 * 13 4 2 15 15 C 1.52997 * 109.47196 * 179.97438 * 14 13 4 16 16 N 1.46504 * 109.47194 * 179.97438 * 15 14 13 17 17 C 1.34776 * 120.00068 * 180.02562 * 16 15 14 18 18 O 1.21596 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.47515 * 119.99950 * 180.02562 * 17 16 15 20 20 C 1.39812 * 120.21841 * 0.27629 * 19 17 16 21 21 C 1.37388 * 120.12492 * 180.40819 * 20 19 17 22 22 C 1.39754 * 120.39424 * 359.73902 * 21 20 19 23 23 C 1.39311 * 119.29797 * 359.75613 * 22 21 20 24 24 C 1.37417 * 120.64861 * 0.32592 * 23 22 21 25 25 C 1.51613 * 107.87758 * 180.53004 * 23 22 21 26 26 C 1.54605 * 102.73150 * 16.01095 * 25 23 22 27 27 N 1.39466 * 129.73999 * 179.51966 * 22 21 20 28 28 C 1.46893 * 111.00148 * 283.72492 * 27 22 21 29 29 H 1.08999 * 109.47473 * 305.40192 * 1 2 3 30 30 H 1.09000 * 109.46806 * 65.40291 * 1 2 3 31 31 H 1.09003 * 109.46746 * 185.40185 * 1 2 3 32 32 H 1.08994 * 109.46981 * 240.00003 * 2 1 3 33 33 H 1.09002 * 109.46560 * 180.44258 * 3 2 1 34 34 H 1.09004 * 109.47280 * 300.44515 * 3 2 1 35 35 H 1.08997 * 109.47122 * 60.44335 * 3 2 1 36 36 H 0.96996 * 120.00187 * 180.02562 * 8 7 5 37 37 H 1.08993 * 109.47258 * 329.99283 * 13 4 2 38 38 H 1.09000 * 109.46510 * 209.99619 * 13 4 2 39 39 H 1.09005 * 109.47084 * 59.99799 * 14 13 4 40 40 H 1.09004 * 109.47191 * 300.00150 * 14 13 4 41 41 H 1.09005 * 109.46858 * 60.00163 * 15 14 13 42 42 H 1.08997 * 109.47427 * 300.00031 * 15 14 13 43 43 H 0.97003 * 119.99802 * 0.02562 * 16 15 14 44 44 H 1.07997 * 119.93385 * 0.10700 * 20 19 17 45 45 H 1.08004 * 119.79863 * 179.75955 * 21 20 19 46 46 H 1.07997 * 120.01965 * 179.82062 * 24 23 22 47 47 H 1.09001 * 110.75912 * 134.32552 * 25 23 22 48 48 H 1.08998 * 110.76095 * 257.51534 * 25 23 22 49 49 H 1.09001 * 110.77550 * 92.72102 * 26 25 23 50 50 H 1.09000 * 110.77638 * 215.95708 * 26 25 23 51 51 H 1.09000 * 109.47388 * 299.85131 * 28 27 22 52 52 H 1.09003 * 109.47487 * 59.85952 * 28 27 22 53 53 H 1.09006 * 109.47348 * 179.85562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6502 -0.2501 2.4393 6 1 1.5674 0.8089 2.6344 7 6 1.3833 -1.1647 3.4489 8 7 1.0660 -2.4057 3.1457 9 14 1.4744 -0.6344 5.2377 10 1 1.8482 0.8009 5.3101 11 1 0.1510 -0.8338 5.8812 12 1 2.4958 -1.4488 5.9439 13 6 2.9006 -1.8525 1.0623 14 6 4.3581 -1.3872 1.0482 15 6 5.2795 -2.6006 0.9090 16 7 6.6751 -2.1551 0.8949 17 6 7.6694 -3.0574 0.7793 18 8 7.4083 -4.2414 0.6861 19 6 9.0747 -2.6088 0.7657 20 6 9.3803 -1.2491 0.8783 21 6 10.6894 -0.8326 0.8570 22 6 11.7251 -1.7621 0.7284 23 6 11.4167 -3.1168 0.6270 24 6 10.1097 -3.5410 0.6459 25 6 12.7197 -3.8836 0.5131 26 6 13.7674 -2.8458 0.9773 27 7 13.1039 -1.5590 0.6760 28 6 13.5117 -1.0522 -0.6411 29 1 -0.3634 0.5953 0.8376 30 1 -0.3633 0.4278 -0.9344 31 1 -0.3633 -1.0232 0.0967 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0079 34 1 1.6701 1.9587 -0.8860 35 1 1.6832 1.9540 0.8939 36 1 0.8791 -3.0447 3.8511 37 1 2.6765 -2.3735 0.1315 38 1 2.7427 -2.5274 1.9035 39 1 4.5821 -0.8662 1.9791 40 1 4.5159 -0.7122 0.2070 41 1 5.0555 -3.1220 -0.0217 42 1 5.1216 -3.2753 1.7504 43 1 6.8834 -1.2105 0.9689 44 1 8.5857 -0.5245 0.9773 45 1 10.9194 0.2193 0.9404 46 1 9.8821 -4.5935 0.5637 47 1 12.7164 -4.7511 1.1730 48 1 12.9014 -4.1854 -0.5184 49 1 13.9588 -2.9412 2.0462 50 1 14.6922 -2.9495 0.4097 51 1 13.2377 -1.7752 -1.4094 52 1 13.0093 -0.1051 -0.8375 53 1 14.5911 -0.9003 -0.6537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664548390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:44 Heat of formation + Delta-G solvation = -0.843672 kcal Electronic energy + Delta-G solvation = -29721.358946 eV Core-core repulsion = 25785.620155 eV Total energy + Delta-G solvation = -3935.738791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.96752 -40.69854 -38.51347 -37.55874 -36.42641 -34.27738 -33.56228 -33.15363 -31.37160 -30.46488 -29.84623 -27.71754 -27.37024 -26.80696 -25.25004 -23.96994 -23.33544 -22.38249 -22.01621 -21.30861 -21.03225 -18.63450 -18.20241 -17.56456 -17.32285 -16.99058 -16.58165 -16.55023 -16.35810 -16.00259 -15.66374 -15.22556 -15.03221 -14.94819 -14.75154 -14.51750 -14.25948 -14.07610 -13.97512 -13.76414 -13.45443 -13.27731 -13.23102 -13.15117 -13.02274 -12.84554 -12.75864 -12.72783 -12.48012 -12.31737 -12.15465 -12.10927 -11.91863 -11.89557 -11.69542 -11.30342 -11.25674 -11.07904 -10.56855 -10.45955 -10.15706 -9.95576 -8.99830 -8.46976 -7.75426 -5.36914 -0.29811 0.29407 1.44202 1.49230 1.57005 1.71540 2.09746 2.54091 2.59569 2.74079 3.30778 3.49562 3.61851 3.67981 3.76863 3.95353 4.02968 4.15127 4.18415 4.21544 4.31230 4.38051 4.45014 4.50075 4.53019 4.56641 4.65656 4.71516 4.74568 4.76549 4.82309 4.92033 4.95258 4.96362 4.98969 5.05098 5.10860 5.14084 5.17868 5.22634 5.24826 5.25293 5.29985 5.39194 5.50226 5.53489 5.64219 5.70430 5.77637 5.84972 5.90747 6.12955 6.49668 6.55531 7.14166 7.25653 7.96220 8.48865 9.20040 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002013 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.108518 B =13906.853643 C =14321.288220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 C -0.141 4.141 4 N -0.593 5.593 5 C -0.242 4.242 6 H 0.057 0.943 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.294 1.294 13 C 0.151 3.849 14 C -0.121 4.121 15 C 0.133 3.867 16 N -0.709 5.709 17 C 0.554 3.446 18 O -0.588 6.588 19 C -0.163 4.163 20 C -0.061 4.061 21 C -0.121 4.121 22 C 0.112 3.888 23 C -0.161 4.161 24 C -0.043 4.043 25 C -0.108 4.108 26 C 0.049 3.951 27 N -0.507 5.507 28 C 0.025 3.975 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.247 0.753 37 H 0.026 0.974 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.413 0.587 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.113 0.887 51 H 0.034 0.966 52 H 0.075 0.925 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.606 4.353 -9.210 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.373 4.373 6 H 0.074 0.926 7 C -0.235 4.235 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.190 1.190 11 H -0.224 1.224 12 H -0.221 1.221 13 C 0.024 3.976 14 C -0.162 4.162 15 C 0.009 3.991 16 N -0.360 5.360 17 C 0.343 3.657 18 O -0.470 6.470 19 C -0.167 4.167 20 C -0.080 4.080 21 C -0.141 4.141 22 C 0.015 3.985 23 C -0.164 4.164 24 C -0.062 4.062 25 C -0.146 4.146 26 C -0.077 4.077 27 N -0.224 5.224 28 C -0.120 4.120 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.251 0.749 44 H 0.172 0.828 45 H 0.171 0.829 46 H 0.139 0.861 47 H 0.114 0.886 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.131 0.869 51 H 0.053 0.947 52 H 0.094 0.906 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.556 3.838 -8.848 28.253 hybrid contribution -0.813 -0.557 0.856 1.306 sum 25.743 3.281 -7.992 27.154 Atomic orbital electron populations 1.21977 0.97943 0.99642 1.00064 1.20673 0.92498 0.93214 0.89036 1.22026 1.00424 0.96945 1.00642 1.44070 1.52423 1.33442 1.01422 1.19066 1.39509 0.91017 0.87730 0.92588 1.25775 0.99429 0.96620 1.01663 1.70142 1.49074 1.05096 1.31929 0.85567 0.76601 0.78244 0.82207 1.19001 1.22390 1.22136 1.20674 0.87249 0.90257 0.99439 1.22136 0.96139 0.96152 1.01732 1.21183 0.79574 0.97493 1.00891 1.45884 1.05862 1.10873 1.73401 1.18583 0.86131 0.85339 0.75646 1.90746 1.85376 1.18519 1.52374 1.19719 0.91562 0.95212 1.10209 1.21300 0.97445 0.93783 0.95449 1.20652 0.90121 1.00436 1.02876 1.20035 0.90284 0.93087 0.95099 1.21193 0.94819 0.96250 1.04164 1.20450 0.90745 0.99598 0.95428 1.21768 0.89931 0.99318 1.03568 1.23327 0.97154 0.83976 1.03242 1.59976 1.02269 1.29654 1.30509 1.22583 1.02986 1.00283 0.86124 0.94573 0.91686 0.95878 0.92344 0.93219 0.91589 0.94448 0.94383 0.95532 0.92413 0.92671 0.91080 0.92062 0.93781 0.74915 0.82840 0.82909 0.86080 0.88622 0.88937 0.88955 0.86881 0.94682 0.90572 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 9.03 71.98 0.65 -4.74 16 2 C 0.15 5.92 3.36 44.99 0.15 6.08 16 3 C -0.14 -4.68 9.20 71.98 0.66 -4.02 16 4 N -0.59 -27.61 2.36 -678.04 -1.60 -29.21 16 5 C -0.24 -12.58 8.23 84.03 0.69 -11.89 16 6 H 0.06 2.92 6.95 -2.91 -0.02 2.90 16 7 C -0.04 -2.06 4.94 84.86 0.42 -1.64 16 8 N -0.92 -53.36 11.52 21.65 0.25 -53.11 16 9 Si 0.94 44.36 29.61 68.60 2.03 46.39 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 C 0.15 6.75 5.27 86.38 0.46 7.20 16 14 C -0.12 -4.31 5.65 30.59 0.17 -4.14 16 15 C 0.13 4.52 5.67 86.38 0.49 5.01 16 16 N -0.71 -20.16 5.51 -466.28 -2.57 -22.73 16 17 C 0.55 17.55 7.76 86.69 0.67 18.22 16 18 O -0.59 -23.58 16.35 -4.02 -0.07 -23.64 16 19 C -0.16 -4.13 5.88 -20.07 -0.12 -4.25 16 20 C -0.06 -1.14 9.52 22.45 0.21 -0.93 16 21 C -0.12 -2.04 10.05 22.44 0.23 -1.82 16 22 C 0.11 2.01 5.57 38.55 0.21 2.23 16 23 C -0.16 -3.16 6.21 -19.51 -0.12 -3.28 16 24 C -0.04 -1.04 9.58 22.46 0.22 -0.83 16 25 C -0.11 -1.38 6.98 30.69 0.21 -1.17 16 26 C 0.05 0.50 6.99 86.66 0.61 1.11 16 27 N -0.51 -7.06 5.31 -713.36 -3.79 -10.84 16 28 C 0.03 0.24 9.28 127.69 1.19 1.42 16 29 H 0.04 1.51 7.80 -2.39 -0.02 1.49 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 2.12 7.78 -2.39 -0.02 2.10 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.35 7.06 -2.39 -0.02 1.33 16 36 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.03 1.15 7.90 -2.39 -0.02 1.13 16 38 H 0.06 3.06 5.56 -2.39 -0.01 3.05 16 39 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.41 9.03 6.50 -92.71 -0.60 8.42 16 44 H 0.15 2.13 6.40 -2.91 -0.02 2.11 16 45 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.12 3.19 7.65 -2.91 -0.02 3.17 16 47 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.11 0.57 7.77 -2.39 -0.02 0.55 16 51 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 52 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.10 0.53 8.11 -2.38 -0.02 0.51 16 Total: -1.00 -69.65 422.87 1.55 -68.11 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.29 Total: 22.49 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 7.00 Total: 2.56 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -7.70 Total: -115.90 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.65 1.55 -68.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664548390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.262 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds