Wall clock time and date at job start Wed Apr 1 2020 04:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08993 * 109.49699 * 54.99876 * 3 2 1 5 5 C 1.53189 * 109.49426 * 294.93156 * 3 2 1 6 6 N 1.46930 * 108.77717 * 185.41450 * 5 3 2 7 7 C 1.34770 * 120.63055 * 233.59039 * 6 5 3 8 8 O 1.21280 * 120.00494 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99885 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.47182 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47257 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47206 * 179.97438 * 11 10 9 13 13 C 1.38668 * 120.41691 * 269.71636 * 12 11 10 14 14 C 1.38630 * 118.41960 * 179.78039 * 13 12 11 15 15 C 1.38233 * 119.16252 * 0.51862 * 14 13 12 16 16 N 1.31859 * 120.75867 * 359.72053 * 15 14 13 17 17 C 1.31889 * 121.72684 * 0.02562 * 16 15 14 18 18 C 1.46924 * 118.73697 * 53.60536 * 6 5 3 19 19 C 1.53197 * 108.77757 * 306.39661 * 18 6 5 20 20 C 1.53039 * 109.33623 * 54.62034 * 19 18 6 21 21 H 1.08997 * 109.43430 * 58.68892 * 20 19 18 22 22 N 1.46501 * 109.48218 * 178.64818 * 20 19 18 23 23 C 1.36938 * 119.99855 * 275.08164 * 22 20 19 24 24 H 1.08001 * 119.99920 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00202 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00309 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00392 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46754 * 59.99915 * 27 25 23 29 29 H 1.48494 * 109.47285 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.46934 * 300.00165 * 27 25 23 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 1.08994 * 109.58894 * 305.20212 * 5 3 2 37 37 H 1.09001 * 109.58709 * 65.62878 * 5 3 2 38 38 H 1.09001 * 109.47387 * 299.99497 * 9 7 6 39 39 H 1.08994 * 109.47567 * 60.00201 * 9 7 6 40 40 H 1.09007 * 109.46716 * 299.99316 * 10 9 7 41 41 H 1.08998 * 109.47871 * 59.99618 * 10 9 7 42 42 H 1.09007 * 109.46377 * 299.99129 * 11 10 9 43 43 H 1.08998 * 109.47314 * 59.98883 * 11 10 9 44 44 H 1.08003 * 120.79176 * 0.02562 * 13 12 11 45 45 H 1.08004 * 120.42064 * 180.21942 * 14 13 12 46 46 H 1.07994 * 119.62268 * 179.74567 * 15 14 13 47 47 H 1.08001 * 119.61085 * 179.97438 * 17 16 15 48 48 H 1.09007 * 109.58527 * 66.18423 * 18 6 5 49 49 H 1.08998 * 109.58628 * 186.46168 * 18 6 5 50 50 H 1.08995 * 109.49449 * 174.58383 * 19 18 6 51 51 H 1.08998 * 109.49718 * 294.68034 * 19 18 6 52 52 H 0.97000 * 120.00573 * 95.08065 * 22 20 19 53 53 H 0.96993 * 120.00778 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6056 1.9820 0.8416 5 6 1.6365 2.1274 -1.3095 6 7 2.2430 3.4651 -1.3500 7 6 1.4833 4.5572 -1.5657 8 8 0.2870 4.4415 -1.7281 9 6 2.1202 5.9225 -1.6039 10 6 1.0448 6.9799 -1.8616 11 6 1.6915 8.3660 -1.9010 12 6 0.6324 9.4074 -2.1554 13 6 0.3146 9.7833 -3.4518 14 6 -0.6695 10.7418 -3.6383 15 6 -1.2891 11.2950 -2.5334 16 7 -0.9576 10.9167 -1.3145 17 6 -0.0299 10.0042 -1.0997 18 6 3.6934 3.5894 -1.1513 19 6 4.0739 2.8881 0.1564 20 6 3.5654 1.4450 0.1241 21 1 4.0001 0.9264 -0.7303 22 7 3.9556 0.7616 1.3598 23 6 5.1938 0.1859 1.4621 24 1 5.8828 0.2359 0.6320 25 6 5.5638 -0.4612 2.6331 26 7 4.7243 -0.5218 3.6450 27 14 7.2532 -1.2460 2.7729 28 1 8.2982 -0.2067 2.5918 29 1 7.4004 -1.8685 4.1130 30 1 7.4035 -2.2873 1.7248 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.9931 1.5388 -2.1547 37 1 0.5511 2.2168 -1.3558 38 1 2.6056 6.1239 -0.6489 39 1 2.8614 5.9555 -2.4023 40 1 0.5590 6.7788 -2.8165 41 1 0.3038 6.9469 -1.0629 42 1 2.1775 8.5673 -0.9463 43 1 2.4323 8.3988 -2.6999 44 1 0.8188 9.3371 -4.2962 45 1 -0.9451 11.0560 -4.6342 46 1 -2.0538 12.0452 -2.6700 47 1 0.2150 9.7202 -0.0868 48 1 4.2178 3.1200 -1.9837 49 1 3.9656 4.6434 -1.0958 50 1 5.1581 2.8893 0.2677 51 1 3.6208 3.4143 0.9966 52 1 3.3369 0.7170 2.1055 53 1 4.9826 -0.9743 4.4631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670587137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:44 Heat of formation + Delta-G solvation = -32.587570 kcal Electronic energy + Delta-G solvation = -29909.984270 eV Core-core repulsion = 25972.868960 eV Total energy + Delta-G solvation = -3937.115310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.35380 -41.01242 -39.19827 -36.28690 -36.12220 -35.30740 -33.42551 -33.22253 -32.33688 -31.02934 -30.19311 -28.24825 -26.48975 -25.21201 -24.51368 -24.45873 -23.65574 -22.19813 -22.01052 -21.10942 -19.93523 -19.02014 -18.15565 -17.87933 -17.41666 -17.02361 -16.74204 -16.67023 -16.00545 -15.66358 -15.53337 -15.25718 -14.98719 -14.94633 -14.71688 -14.51548 -14.46954 -14.17981 -13.90680 -13.90278 -13.63260 -13.33220 -13.08142 -13.04074 -12.87357 -12.78691 -12.66575 -12.52772 -12.50397 -12.20880 -12.13599 -11.97632 -11.82411 -11.60678 -11.57186 -11.51551 -11.07627 -10.90419 -10.71396 -10.65139 -10.34287 -9.83952 -9.60703 -8.94029 -7.89267 -5.16750 0.20614 0.38902 1.49440 1.51434 1.57323 1.68333 2.08200 2.59312 2.89090 3.43683 3.54052 3.60182 3.78768 3.80656 3.85135 3.94806 4.03687 4.09407 4.11911 4.13026 4.25979 4.27338 4.30336 4.36909 4.41563 4.47935 4.55751 4.61661 4.67003 4.72860 4.78369 4.81340 4.82728 4.86400 4.88393 4.94034 5.00783 5.04180 5.08151 5.14926 5.17168 5.24192 5.30128 5.38892 5.42259 5.46894 5.48564 5.53860 5.60477 5.69684 5.84653 6.31715 6.50221 7.06641 7.22643 7.38314 8.15100 8.38012 9.34006 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.001918 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.300924 B =14596.404302 C =15411.474781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.049 0.951 5 C 0.125 3.875 6 N -0.610 5.610 7 C 0.506 3.494 8 O -0.591 6.591 9 C -0.133 4.133 10 C -0.090 4.090 11 C -0.069 4.069 12 C -0.135 4.135 13 C -0.081 4.081 14 C -0.170 4.170 15 C 0.072 3.928 16 N -0.519 5.519 17 C 0.079 3.921 18 C 0.114 3.886 19 C -0.144 4.144 20 C 0.177 3.823 21 H 0.047 0.953 22 N -0.731 5.731 23 C -0.229 4.229 24 H 0.078 0.922 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.968 3.032 28 H -0.277 1.277 29 H -0.302 1.302 30 H -0.280 1.280 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.171 0.829 47 H 0.159 0.841 48 H 0.085 0.915 49 H 0.116 0.884 50 H 0.068 0.932 51 H 0.045 0.955 52 H 0.369 0.631 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 20.232 -18.294 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.342 5.342 7 C 0.297 3.703 8 O -0.472 6.472 9 C -0.173 4.173 10 C -0.128 4.128 11 C -0.107 4.107 12 C -0.137 4.137 13 C -0.107 4.107 14 C -0.189 4.189 15 C -0.085 4.085 16 N -0.228 5.228 17 C -0.078 4.078 18 C -0.008 4.008 19 C -0.184 4.184 20 C 0.069 3.931 21 H 0.065 0.935 22 N -0.370 5.370 23 C -0.361 4.361 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.203 1.203 29 H -0.229 1.229 30 H -0.206 1.206 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.179 0.821 46 H 0.188 0.812 47 H 0.176 0.824 48 H 0.103 0.897 49 H 0.134 0.866 50 H 0.086 0.914 51 H 0.063 0.937 52 H 0.201 0.799 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.775 20.489 -17.717 27.921 hybrid contribution 0.844 -1.287 0.526 1.626 sum -5.931 19.202 -17.190 26.446 Atomic orbital electron populations 1.21773 0.95050 1.01847 1.01585 1.21361 0.95929 0.95439 1.01866 1.21620 0.95984 0.96270 0.97357 0.93282 1.21563 0.99104 0.82530 0.96620 1.48304 1.09218 1.06451 1.70208 1.21445 0.86483 0.87546 0.74841 1.90660 1.16949 1.87394 1.52240 1.21781 1.00045 0.89009 1.06433 1.21208 0.96971 0.92674 1.01978 1.20571 0.95208 0.90224 1.04698 1.21102 0.99484 0.98806 0.94259 1.21911 0.96066 0.95419 0.97326 1.22486 0.97207 0.97740 1.01512 1.23190 0.98835 0.98775 0.87655 1.67659 1.14971 1.13863 1.26319 1.22947 0.92084 0.92532 1.00224 1.21939 0.78501 1.03181 0.97194 1.22474 1.01339 0.97446 0.97186 1.20435 0.92176 0.91643 0.88846 0.93532 1.42590 1.15435 1.65077 1.13929 1.19559 0.92560 1.25716 0.98280 0.90373 1.25489 1.01567 1.03314 0.96612 1.69813 1.37129 1.50145 1.05150 0.85292 0.80461 0.78438 0.76056 1.20304 1.22879 1.20628 0.92118 0.91855 0.93746 0.93542 0.91736 0.90394 0.90060 0.86921 0.85601 0.92399 0.93479 0.89225 0.88281 0.82575 0.82137 0.81151 0.82416 0.89695 0.86622 0.91350 0.93658 0.79898 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.67 71.98 0.70 -3.33 16 2 C -0.11 -3.51 5.31 30.60 0.16 -3.35 16 3 C -0.09 -2.97 1.92 -10.71 -0.02 -2.99 16 4 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 5 C 0.13 3.41 5.32 86.36 0.46 3.87 16 6 N -0.61 -14.75 2.97 -818.91 -2.43 -17.19 16 7 C 0.51 12.42 7.70 87.66 0.67 13.09 16 8 O -0.59 -19.46 15.39 -3.03 -0.05 -19.50 16 9 C -0.13 -1.92 4.05 29.85 0.12 -1.80 16 10 C -0.09 -1.42 4.49 30.60 0.14 -1.28 16 11 C -0.07 -0.72 5.37 29.85 0.16 -0.56 16 12 C -0.13 -1.96 5.15 -19.78 -0.10 -2.06 16 13 C -0.08 -1.01 9.86 22.47 0.22 -0.79 16 14 C -0.17 -2.04 10.11 22.36 0.23 -1.81 16 15 C 0.07 1.13 11.18 84.69 0.95 2.08 16 16 N -0.52 -10.92 10.36 -195.84 -2.03 -12.94 16 17 C 0.08 1.44 10.86 84.67 0.92 2.36 16 18 C 0.11 2.30 6.34 86.36 0.55 2.85 16 19 C -0.14 -4.29 5.66 30.67 0.17 -4.12 16 20 C 0.18 6.39 2.19 45.02 0.10 6.49 16 21 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 22 N -0.73 -34.83 4.33 -322.82 -1.40 -36.23 16 23 C -0.23 -12.05 9.93 84.03 0.83 -11.21 16 24 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 26 N -0.97 -58.64 13.06 21.65 0.28 -58.35 16 27 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 30 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.58 6.70 -2.39 -0.02 1.57 16 33 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 1.86 7.22 -2.39 -0.02 1.85 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.40 5.72 -2.39 -0.01 2.39 16 38 H 0.11 1.32 7.70 -2.39 -0.02 1.30 16 39 H 0.13 1.05 7.94 -2.39 -0.02 1.03 16 40 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 41 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.09 0.77 8.09 -2.38 -0.02 0.75 16 43 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 44 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 46 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 47 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 48 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.12 1.52 5.93 -2.39 -0.01 1.51 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.37 19.59 7.51 -92.71 -0.70 18.89 16 53 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -73.06 420.31 3.31 -69.75 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.19 Total: 33.87 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 6.72 Total: -6.46 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -5.58 Total: -124.71 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.06 3.31 -69.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670587137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.164 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds