Wall clock time and date at job start Wed Apr 1 2020 03:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 C 1.52998 * 109.47143 * 119.99604 * 2 1 3 5 5 H 1.09004 * 109.47378 * 304.50255 * 4 2 1 6 6 C 1.50708 * 109.46855 * 64.50221 * 4 2 1 7 7 O 1.21273 * 120.00361 * 26.33547 * 6 4 2 8 8 N 1.34777 * 119.99621 * 206.34098 * 6 4 2 9 9 C 1.46502 * 120.00270 * 4.96045 * 8 6 4 10 10 C 1.46507 * 119.99692 * 184.96478 * 8 6 4 11 11 C 1.53354 * 109.41539 * 240.12540 * 10 8 6 12 12 C 1.53193 * 109.14357 * 178.67417 * 11 10 8 13 13 N 1.46921 * 108.89460 * 54.58196 * 12 11 10 14 14 C 1.36937 * 120.63412 * 126.29825 * 13 12 11 15 15 H 1.07999 * 120.00100 * 328.30690 * 14 13 12 16 16 C 1.38814 * 120.00214 * 148.31522 * 14 13 12 17 17 N 1.31614 * 120.00054 * 166.12465 * 16 14 13 18 18 Si 1.86802 * 119.99830 * 346.11639 * 16 14 13 19 19 H 1.48497 * 109.46911 * 87.47221 * 18 16 14 20 20 H 1.48503 * 109.47127 * 207.46940 * 18 16 14 21 21 H 1.48501 * 109.47053 * 327.47024 * 18 16 14 22 22 C 1.46935 * 118.73574 * 306.31287 * 13 12 11 23 23 C 1.53043 * 109.45953 * 119.99891 * 10 8 6 24 24 C 1.50695 * 109.47287 * 184.49923 * 4 2 1 25 25 C 1.38667 * 120.41872 * 120.00183 * 24 4 2 26 26 C 1.38636 * 118.42043 * 180.02562 * 25 24 4 27 27 C 1.38224 * 119.16094 * 359.97438 * 26 25 24 28 28 N 1.31850 * 120.76517 * 0.02562 * 27 26 25 29 29 C 1.31892 * 121.72449 * 359.70388 * 28 27 26 30 30 H 1.09013 * 109.47056 * 304.18379 * 1 2 3 31 31 H 1.08999 * 109.47503 * 64.18023 * 1 2 3 32 32 H 1.08998 * 109.47223 * 184.18501 * 1 2 3 33 33 H 1.08994 * 109.46687 * 239.99783 * 2 1 3 34 34 H 1.09001 * 109.46770 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46834 * 299.99887 * 3 2 1 36 36 H 1.08998 * 109.47095 * 60.00096 * 3 2 1 37 37 H 1.08997 * 109.46949 * 275.51880 * 9 8 6 38 38 H 1.08999 * 109.47091 * 35.52374 * 9 8 6 39 39 H 1.09004 * 109.46825 * 155.52031 * 9 8 6 40 40 H 1.08998 * 109.45609 * 0.02562 * 10 8 6 41 41 H 1.08998 * 109.68472 * 58.71340 * 11 10 8 42 42 H 1.08997 * 109.47453 * 298.50706 * 11 10 8 43 43 H 1.08994 * 109.58840 * 294.71636 * 12 11 10 44 44 H 1.09004 * 109.58355 * 174.43514 * 12 11 10 45 45 H 0.97006 * 119.99766 * 179.97438 * 17 16 14 46 46 H 1.09002 * 109.58055 * 173.39455 * 22 13 12 47 47 H 1.08994 * 109.58724 * 293.67968 * 22 13 12 48 48 H 1.08998 * 109.49742 * 61.43095 * 23 10 8 49 49 H 1.08998 * 109.49576 * 301.33506 * 23 10 8 50 50 H 1.08003 * 120.79139 * 359.97438 * 25 24 4 51 51 H 1.07996 * 120.41973 * 180.02562 * 26 25 24 52 52 H 1.08001 * 119.61895 * 179.97438 * 27 26 25 53 53 H 1.08001 * 119.61675 * 180.31527 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6123 -0.2560 2.1374 6 6 1.6307 -2.1706 1.1948 7 8 1.4394 -2.7069 0.1241 8 7 1.4773 -2.8707 2.3362 9 6 1.6016 -2.1971 3.6312 10 6 1.1863 -4.3056 2.2818 11 6 -0.1561 -4.5800 2.9707 12 6 -0.4700 -6.0767 2.8811 13 7 0.6604 -6.8339 3.4354 14 6 0.4623 -7.7584 4.4261 15 1 -0.3282 -7.6153 5.1479 16 6 1.2776 -8.8793 4.5026 17 7 1.2766 -9.6207 5.5901 18 14 2.3759 -9.3354 3.0621 19 1 3.6734 -8.6236 3.1842 20 1 2.6133 -10.8014 3.0654 21 1 1.7140 -8.9440 1.7917 22 6 2.0077 -6.5802 2.9068 23 6 2.2975 -5.0786 2.9958 24 6 3.5428 -0.6254 1.3063 25 6 4.1670 -0.0126 2.3823 26 6 5.5517 0.0530 2.3920 27 6 6.2592 -0.4913 1.3366 28 7 5.6321 -1.0667 0.3296 29 6 4.3165 -1.1518 0.2895 30 1 -0.3634 0.5775 0.8502 31 1 -0.3634 0.4476 -0.9250 32 1 -0.3633 -1.0249 0.0750 33 1 1.8932 -0.5138 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.6525 -2.1483 3.9159 38 1 1.1982 -1.1873 3.5556 39 1 1.0463 -2.7546 4.3855 40 1 1.1319 -4.6258 1.2413 41 1 -0.9449 -4.0126 2.4768 42 1 -0.0946 -4.2832 4.0177 43 1 -0.6213 -6.3566 1.8387 44 1 -1.3719 -6.2957 3.4529 45 1 1.8460 -10.4042 5.6434 46 1 2.7412 -7.1295 3.4972 47 1 2.0592 -6.9036 1.8672 48 1 2.3359 -4.7768 4.0424 49 1 3.2540 -4.8639 2.5194 50 1 3.5881 0.4045 3.1931 51 1 6.0712 0.5226 3.2142 52 1 7.3382 -0.4439 1.3364 53 1 3.8383 -1.6350 -0.5496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690028801.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:54 Heat of formation + Delta-G solvation = -1.215788 kcal Electronic energy + Delta-G solvation = -32068.563001 eV Core-core repulsion = 28132.808074 eV Total energy + Delta-G solvation = -3935.754927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.01613 -40.73365 -39.37238 -37.15484 -36.59586 -34.41441 -33.51896 -32.57341 -32.10057 -32.00658 -28.77963 -27.99287 -27.91263 -26.61577 -24.61972 -24.53494 -23.92755 -23.33358 -21.75032 -20.75824 -19.89695 -18.87597 -18.28094 -18.13432 -17.58636 -17.09853 -16.89655 -16.73664 -16.01135 -15.87439 -15.47595 -15.42865 -15.27683 -14.85673 -14.73613 -14.56071 -14.46489 -14.15748 -13.99298 -13.93229 -13.79433 -13.57779 -13.49373 -13.45646 -13.14175 -13.00542 -12.76181 -12.65304 -12.52245 -12.22741 -12.08579 -12.01353 -11.86906 -11.78375 -11.59665 -11.52665 -11.37794 -11.00661 -10.78953 -10.59345 -10.39130 -9.88174 -9.62183 -8.94048 -8.19502 -5.58154 0.10012 0.34390 1.24563 1.36939 1.44854 1.57946 1.95115 2.36579 2.81875 3.05951 3.25681 3.44431 3.47377 3.66689 3.71564 3.78489 3.91523 3.94758 4.05432 4.08941 4.15464 4.21048 4.25918 4.28093 4.39518 4.41092 4.44658 4.59487 4.63296 4.64226 4.68759 4.70920 4.80535 4.80757 4.83390 4.86885 4.93558 4.99684 5.00492 5.02512 5.03437 5.10190 5.18577 5.23160 5.25877 5.37732 5.38951 5.44462 5.54888 5.76525 5.86847 6.11326 6.42193 6.87590 7.01908 7.14927 7.56526 7.99653 9.00285 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.003188 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.431629 B = 8780.402052 C = 9752.815754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.136 4.136 4 C -0.048 4.048 5 H 0.133 0.867 6 C 0.517 3.483 7 O -0.577 6.577 8 N -0.604 5.604 9 C 0.066 3.934 10 C 0.153 3.847 11 C -0.123 4.123 12 C 0.145 3.855 13 N -0.619 5.619 14 C -0.245 4.245 15 H 0.059 0.941 16 C -0.029 4.029 17 N -0.957 5.957 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.309 1.309 21 H -0.269 1.269 22 C 0.121 3.879 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.062 4.062 26 C -0.161 4.161 27 C 0.079 3.921 28 N -0.517 5.517 29 C 0.088 3.912 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.025 0.975 44 H 0.066 0.934 45 H 0.262 0.738 46 H 0.055 0.945 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.172 0.828 51 H 0.171 0.829 52 H 0.174 0.826 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 29.701 -5.556 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.193 4.193 4 C -0.070 4.070 5 H 0.151 0.849 6 C 0.307 3.693 7 O -0.456 6.456 8 N -0.335 5.335 9 C -0.075 4.075 10 C 0.049 3.951 11 C -0.163 4.163 12 C 0.020 3.980 13 N -0.344 5.344 14 C -0.375 4.375 15 H 0.077 0.923 16 C -0.224 4.224 17 N -0.604 5.604 18 Si 0.775 3.225 19 H -0.201 1.201 20 H -0.238 1.238 21 H -0.194 1.194 22 C -0.004 4.004 23 C -0.163 4.163 24 C -0.123 4.123 25 C -0.088 4.088 26 C -0.181 4.181 27 C -0.077 4.077 28 N -0.226 5.226 29 C -0.068 4.068 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.190 0.810 51 H 0.188 0.812 52 H 0.191 0.809 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.755 28.942 -6.723 30.090 hybrid contribution 0.154 -1.088 -0.044 1.100 sum 4.908 27.854 -6.767 29.081 Atomic orbital electron populations 1.21828 0.94128 1.01224 1.03037 1.20966 0.96432 0.96604 0.95499 1.21774 1.00431 0.93971 1.03171 1.20423 0.92064 0.91241 1.03238 0.84896 1.20991 0.75824 0.89358 0.83168 1.90672 1.52374 1.72178 1.30417 1.48058 1.69643 1.08467 1.07371 1.22113 1.02790 0.98906 0.83739 1.20836 0.94582 0.79793 0.99868 1.22226 0.96049 0.96771 1.01212 1.21061 0.90188 0.90343 0.96433 1.44474 1.02160 1.44851 1.42873 1.18871 1.16377 0.98548 1.03673 0.92349 1.25931 1.01168 0.96316 0.98942 1.69883 1.43063 1.19183 1.28231 0.86001 0.79470 0.75391 0.81655 1.20058 1.23810 1.19404 1.21366 0.87355 0.95378 0.96344 1.22142 0.97772 0.95138 1.01235 1.20347 0.94645 1.00804 0.96532 1.21915 0.95208 0.94950 0.96737 1.22519 0.94822 1.00354 1.00367 1.23302 1.01799 0.93125 0.89487 1.67672 1.10845 1.16310 1.27733 1.22537 0.89569 0.96602 0.98113 0.90591 0.91833 0.94614 0.92530 0.93539 0.91918 0.90482 0.91731 0.88018 0.90293 0.91060 0.90334 0.90842 0.95653 0.91572 0.92864 0.92651 0.95953 0.90874 0.92226 0.81033 0.81190 0.80907 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.03 71.98 0.65 -1.69 16 2 C -0.08 -1.28 1.96 -10.79 -0.02 -1.30 16 3 C -0.14 -1.63 8.88 71.98 0.64 -1.00 16 4 C -0.05 -0.80 1.39 -12.29 -0.02 -0.81 16 5 H 0.13 1.30 5.83 -2.38 -0.01 1.28 16 6 C 0.52 13.05 5.54 87.66 0.49 13.53 16 7 O -0.58 -19.55 14.69 -3.01 -0.04 -19.60 16 8 N -0.60 -14.58 2.76 -821.82 -2.27 -16.85 16 9 C 0.07 1.03 9.14 127.77 1.17 2.20 16 10 C 0.15 4.78 2.47 45.12 0.11 4.89 16 11 C -0.12 -3.73 5.35 30.78 0.16 -3.56 16 12 C 0.15 5.59 6.50 86.36 0.56 6.16 16 13 N -0.62 -29.14 2.74 -699.10 -1.92 -31.06 16 14 C -0.25 -13.80 10.05 84.03 0.84 -12.95 16 15 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 16 C -0.03 -1.68 5.32 84.86 0.45 -1.22 16 17 N -0.96 -60.11 13.97 21.65 0.30 -59.80 16 18 Si 0.94 47.94 24.26 68.60 1.66 49.60 16 19 H -0.27 -13.14 6.47 99.48 0.64 -12.50 16 20 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 21 H -0.27 -13.43 6.59 99.48 0.66 -12.78 16 22 C 0.12 5.29 4.17 86.36 0.36 5.65 16 23 C -0.12 -4.26 5.34 30.67 0.16 -4.09 16 24 C -0.12 -2.09 3.30 -19.78 -0.07 -2.16 16 25 C -0.06 -0.71 9.81 22.47 0.22 -0.49 16 26 C -0.16 -1.83 10.11 22.36 0.23 -1.60 16 27 C 0.08 1.34 11.18 84.69 0.95 2.29 16 28 N -0.52 -12.59 10.36 -195.84 -2.03 -14.62 16 29 C 0.09 2.12 10.04 84.67 0.85 2.97 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.03 0.77 6.79 -2.39 -0.02 0.75 16 33 H 0.06 1.29 7.15 -2.39 -0.02 1.27 16 34 H 0.05 0.65 7.08 -2.39 -0.02 0.63 16 35 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.86 6.19 -2.39 -0.01 0.84 16 39 H 0.08 1.33 6.47 -2.39 -0.02 1.32 16 40 H 0.07 2.63 6.91 -2.39 -0.02 2.61 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.07 2.14 6.73 -2.39 -0.02 2.12 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 45 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 46 H 0.06 2.64 4.48 -2.39 -0.01 2.63 16 47 H 0.02 1.01 6.92 -2.39 -0.02 0.99 16 48 H 0.07 2.45 7.72 -2.39 -0.02 2.43 16 49 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 50 H 0.17 0.66 8.00 -2.91 -0.02 0.64 16 51 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 52 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 53 H 0.13 3.63 7.63 -2.91 -0.02 3.61 16 Total: -1.00 -76.38 402.00 4.22 -72.15 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.77 Total: 13.35 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 7.74 Total: 6.81 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -5.91 Total: -122.32 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.66 Total: 49.60 kcal Total: -76.38 4.22 -72.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690028801.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.938 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds