Wall clock time and date at job start Wed Apr 1 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47097 * 2 1 4 4 C 1.52996 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47427 * 306.06860 * 4 3 2 6 6 C 1.50700 * 109.46889 * 186.07234 * 4 3 2 7 7 O 1.21283 * 120.00084 * 250.41102 * 6 4 3 8 8 N 1.34781 * 120.00512 * 70.40955 * 6 4 3 9 9 C 1.46924 * 120.62406 * 355.27655 * 8 6 4 10 10 C 1.53195 * 108.77317 * 126.41352 * 9 8 6 11 11 C 1.53039 * 109.31351 * 54.63505 * 10 9 8 12 12 C 1.53048 * 109.53583 * 298.63712 * 11 10 9 13 13 H 1.08999 * 109.49050 * 301.40811 * 12 11 10 14 14 N 1.46507 * 109.49366 * 181.31714 * 12 11 10 15 15 C 1.46494 * 119.99960 * 299.99306 * 14 12 11 16 16 C 1.36932 * 119.99546 * 119.99926 * 14 12 11 17 17 H 1.08000 * 120.00717 * 24.44693 * 16 14 12 18 18 C 1.38817 * 119.99654 * 204.43800 * 16 14 12 19 19 N 1.31623 * 119.99925 * 7.82980 * 18 16 14 20 20 Si 1.86797 * 120.00049 * 187.82130 * 18 16 14 21 21 H 1.48497 * 109.47318 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46650 * 120.00596 * 20 18 16 23 23 H 1.48498 * 109.47638 * 240.00302 * 20 18 16 24 24 C 1.46923 * 120.63671 * 175.29978 * 8 6 4 25 25 C 1.50696 * 109.47445 * 66.07049 * 4 3 2 26 26 C 1.38228 * 119.61769 * 84.72587 * 25 4 3 27 27 C 1.38625 * 119.16356 * 179.71048 * 26 25 4 28 28 C 1.38679 * 118.41526 * 0.55550 * 27 26 25 29 29 C 1.38175 * 119.16476 * 359.72712 * 28 27 26 30 30 N 1.31848 * 119.61943 * 264.99687 * 25 4 3 31 31 H 1.08995 * 109.47569 * 300.00775 * 1 2 3 32 32 H 1.09004 * 109.46822 * 60.00510 * 1 2 3 33 33 H 1.08997 * 109.47186 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47780 * 239.99641 * 2 1 3 35 35 H 1.09004 * 109.46822 * 119.99490 * 2 1 3 36 36 H 1.09003 * 109.47209 * 59.99744 * 3 2 1 37 37 H 1.08998 * 109.46633 * 299.99833 * 3 2 1 38 38 H 1.08997 * 109.59092 * 6.63019 * 9 8 6 39 39 H 1.08999 * 109.70710 * 246.26967 * 9 8 6 40 40 H 1.08996 * 109.50058 * 294.68472 * 10 9 8 41 41 H 1.09004 * 109.52583 * 174.59711 * 10 9 8 42 42 H 1.09000 * 109.46581 * 178.61381 * 11 10 9 43 43 H 1.09001 * 109.46031 * 58.64910 * 11 10 9 44 44 H 1.08996 * 109.47159 * 95.14057 * 15 14 12 45 45 H 1.08997 * 109.46975 * 215.13984 * 15 14 12 46 46 H 1.09004 * 109.47395 * 335.13882 * 15 14 12 47 47 H 0.97001 * 119.99831 * 179.97438 * 19 18 16 48 48 H 1.08994 * 109.58773 * 113.79429 * 24 8 6 49 49 H 1.09006 * 109.58134 * 353.37447 * 24 8 6 50 50 H 1.08002 * 120.42192 * 359.97438 * 26 25 4 51 51 H 1.07997 * 120.79554 * 180.25511 * 27 26 25 52 52 H 1.08005 * 120.41469 * 179.75238 * 28 27 26 53 53 H 1.08005 * 119.61871 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8375 0.8316 6 6 4.0722 2.8553 0.1509 7 8 4.6068 3.4117 -0.7848 8 7 3.9274 3.5008 1.3253 9 6 3.1915 2.8797 2.4349 10 6 4.0825 2.8840 3.6811 11 6 4.5540 4.3127 3.9612 12 6 5.3784 4.8212 2.7762 13 1 6.2307 4.1610 2.6161 14 7 5.8556 6.1773 3.0587 15 6 4.8950 7.2546 3.3092 16 6 7.1997 6.4376 3.0884 17 1 7.8845 5.8053 2.5429 18 6 7.6820 7.5146 3.8196 19 7 6.8722 8.1916 4.6060 20 14 9.4802 8.0028 3.6876 21 1 10.1730 7.0897 2.7435 22 1 9.5788 9.3980 3.1886 23 1 10.1181 7.9093 5.0253 24 6 4.5020 4.8389 1.5199 25 6 4.0729 0.8660 -1.2977 26 6 4.1970 1.6834 -2.4055 27 6 4.6663 1.1446 -3.5934 28 6 4.9837 -0.2050 -3.6259 29 6 4.8281 -0.9612 -2.4800 30 7 4.3844 -0.4134 -1.3653 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8935 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 2.9338 1.8534 2.1735 39 1 2.2814 3.4454 2.6345 40 1 4.9471 2.2421 3.5124 41 1 3.5157 2.5139 4.5355 42 1 5.1682 4.3225 4.8617 43 1 3.6883 4.9592 4.1053 44 1 4.7458 7.3658 4.3832 45 1 5.2798 8.1875 2.8973 46 1 3.9447 7.0120 2.8335 47 1 7.2093 8.9439 5.1172 48 1 3.7000 5.5665 1.6440 49 1 5.1091 5.1052 0.6546 50 1 3.9357 2.7296 -2.3452 51 1 4.7775 1.7600 -4.4738 52 1 5.3483 -0.6592 -4.5355 53 1 5.0735 -2.0128 -2.4970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690818728.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:06 Heat of formation + Delta-G solvation = 7.023986 kcal Electronic energy + Delta-G solvation = -31597.344235 eV Core-core repulsion = 27661.946610 eV Total energy + Delta-G solvation = -3935.397624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.02839 -40.65927 -38.94917 -37.03479 -36.58118 -33.95252 -33.37747 -33.05707 -32.81335 -30.88214 -29.73488 -28.06773 -26.83288 -25.53046 -25.29309 -24.44319 -23.33546 -23.05844 -21.90047 -20.93230 -19.94754 -18.81103 -18.39146 -17.71003 -17.36570 -17.01491 -16.73301 -16.38037 -16.17161 -15.78150 -15.64816 -15.41737 -15.21889 -14.83960 -14.59295 -14.49701 -14.38147 -14.19053 -13.88458 -13.80843 -13.72170 -13.63247 -13.24826 -13.04881 -12.84984 -12.81816 -12.52727 -12.39567 -12.27877 -12.09513 -12.04570 -11.95976 -11.89995 -11.78729 -11.66506 -11.42638 -11.38575 -10.83627 -10.69655 -10.48224 -10.31267 -9.84864 -9.68601 -8.74928 -7.84880 -5.35601 0.21076 0.42370 1.42051 1.43509 1.50909 1.53956 1.88673 2.47945 2.90358 3.21967 3.27950 3.34099 3.61796 3.90859 3.93272 3.97283 4.05408 4.06140 4.09253 4.14179 4.20971 4.27629 4.32069 4.33049 4.37484 4.48903 4.59395 4.67494 4.71252 4.74266 4.77882 4.81400 4.85992 4.90933 4.96705 4.99772 5.03057 5.07414 5.15670 5.27795 5.29120 5.30233 5.35865 5.37985 5.45196 5.49999 5.52131 5.53681 5.63054 5.74505 5.85150 6.31537 6.41635 7.03485 7.11783 7.14522 7.84596 8.27125 9.16972 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.002886 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.945378 B = 9700.283240 C =11026.380425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.103 4.103 4 C -0.046 4.046 5 H 0.123 0.877 6 C 0.515 3.485 7 O -0.574 6.574 8 N -0.598 5.598 9 C 0.098 3.902 10 C -0.124 4.124 11 C -0.122 4.122 12 C 0.168 3.832 13 H 0.041 0.959 14 N -0.610 5.610 15 C 0.181 3.819 16 C -0.266 4.266 17 H 0.060 0.940 18 C -0.047 4.047 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.115 3.885 25 C 0.119 3.881 26 C -0.160 4.160 27 C -0.096 4.096 28 C -0.169 4.169 29 C 0.079 3.921 30 N -0.491 5.491 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.009 0.991 45 H 0.012 0.988 46 H 0.030 0.970 47 H 0.249 0.751 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.141 0.859 51 H 0.147 0.853 52 H 0.163 0.837 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.195 -20.536 -10.735 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.142 4.142 4 C -0.068 4.068 5 H 0.140 0.860 6 C 0.304 3.696 7 O -0.454 6.454 8 N -0.330 5.330 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.161 4.161 12 C 0.060 3.940 13 H 0.059 0.941 14 N -0.333 5.333 15 C 0.037 3.963 16 C -0.396 4.396 17 H 0.077 0.923 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.010 4.010 25 C -0.018 4.018 26 C -0.179 4.179 27 C -0.122 4.122 28 C -0.189 4.189 29 C -0.078 4.078 30 N -0.201 5.201 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.159 0.841 51 H 0.165 0.835 52 H 0.181 0.819 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.976 -20.605 -10.368 26.970 hybrid contribution 1.640 1.630 -0.654 2.403 sum -12.336 -18.975 -11.022 25.174 Atomic orbital electron populations 1.21758 0.94705 1.02132 1.02136 1.21437 0.96339 0.94700 1.02584 1.21735 0.89053 0.99427 1.03936 1.20095 0.98881 0.91348 0.96473 0.85967 1.20861 0.78274 0.88591 0.81907 1.90602 1.46026 1.69460 1.39317 1.48164 1.53852 1.17613 1.13330 1.22262 0.94717 1.00255 0.85053 1.21912 1.00149 0.95556 0.98669 1.21931 0.99341 0.97010 0.97857 1.20707 0.94610 0.85704 0.93006 0.94056 1.44064 1.02483 1.04083 1.82679 1.20506 0.89169 0.89486 0.97178 1.19492 0.84322 1.12241 1.23551 0.92267 1.25758 1.01441 0.99956 0.97037 1.70209 1.35167 1.22368 1.30282 0.85217 0.80513 0.77598 0.77207 1.19755 1.21586 1.21419 1.21922 0.97089 0.83323 0.98686 1.20595 0.96927 0.89897 0.94425 1.22662 0.99605 1.02057 0.93593 1.21966 0.95931 0.96108 0.98191 1.22475 1.00809 0.94453 1.01123 1.23198 0.95205 1.01523 0.87869 1.67372 1.11414 1.12001 1.29265 0.91512 0.93336 0.92140 0.93198 0.90619 0.88401 0.92088 0.86519 0.89005 0.92176 0.87682 0.94057 0.92096 0.97254 0.96936 0.95138 0.94168 0.91324 0.92494 0.84149 0.83486 0.81935 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.11 -1.64 5.73 30.60 0.18 -1.47 16 3 C -0.10 -1.73 4.20 30.59 0.13 -1.60 16 4 C -0.05 -1.03 1.65 -12.29 -0.02 -1.05 16 5 H 0.12 2.49 7.35 -2.39 -0.02 2.47 16 6 C 0.51 15.24 6.90 87.66 0.60 15.84 16 7 O -0.57 -21.42 12.24 -3.04 -0.04 -21.46 16 8 N -0.60 -16.83 2.97 -818.93 -2.43 -19.26 16 9 C 0.10 1.89 5.12 86.36 0.44 2.33 16 10 C -0.12 -2.79 6.08 30.67 0.19 -2.61 16 11 C -0.12 -4.07 5.15 30.62 0.16 -3.91 16 12 C 0.17 6.87 2.74 45.07 0.12 7.00 16 13 H 0.04 1.85 7.88 -2.39 -0.02 1.83 16 14 N -0.61 -31.06 2.82 -702.36 -1.98 -33.04 16 15 C 0.18 8.97 8.01 127.77 1.02 9.99 16 16 C -0.27 -15.14 9.59 84.04 0.81 -14.34 16 17 H 0.06 3.39 7.82 -2.91 -0.02 3.37 16 18 C -0.05 -2.66 5.20 84.86 0.44 -2.22 16 19 N -0.93 -55.49 10.52 21.65 0.23 -55.26 16 20 Si 0.97 46.39 29.56 68.60 2.03 48.42 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 C 0.11 4.16 5.77 86.36 0.50 4.66 16 25 C 0.12 3.03 4.98 42.55 0.21 3.25 16 26 C -0.16 -4.28 8.37 22.36 0.19 -4.09 16 27 C -0.10 -2.05 10.18 22.47 0.23 -1.83 16 28 C -0.17 -2.91 10.11 22.36 0.23 -2.69 16 29 C 0.08 1.48 11.18 84.67 0.95 2.43 16 30 N -0.49 -11.62 9.62 -183.89 -1.77 -13.39 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.91 6.92 -2.39 -0.02 0.89 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.29 5.74 -2.39 -0.01 1.28 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.12 1.57 4.68 -2.39 -0.01 1.56 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.73 8.14 -2.38 -0.02 1.72 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.99 7.72 -2.39 -0.02 1.97 16 44 H 0.01 0.49 7.33 -2.39 -0.02 0.48 16 45 H 0.01 0.66 7.30 -2.39 -0.02 0.64 16 46 H 0.03 1.27 6.35 -2.38 -0.02 1.25 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 48 H 0.07 2.42 6.49 -2.39 -0.02 2.41 16 49 H 0.06 2.44 7.03 -2.38 -0.02 2.42 16 50 H 0.14 4.29 5.60 -2.91 -0.02 4.28 16 51 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 52 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 53 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.62 403.91 4.01 -68.62 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.89 Total: 16.74 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 7.08 Total: 8.64 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -5.95 Total: -120.95 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.46 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.62 4.01 -68.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690818728.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.639 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds