Wall clock time and date at job start Wed Apr 1 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 C 1.52993 * 109.47406 * 184.61982 * 3 2 1 5 5 H 1.09006 * 109.46929 * 305.76495 * 4 3 2 6 6 C 1.50701 * 109.47362 * 65.76482 * 4 3 2 7 7 O 1.21281 * 119.99841 * 21.09887 * 6 4 3 8 8 N 1.34781 * 119.99987 * 201.10273 * 6 4 3 9 9 C 1.46920 * 120.63159 * 4.87869 * 8 6 4 10 10 C 1.53197 * 108.77595 * 126.37046 * 9 8 6 11 11 C 1.53045 * 109.30888 * 54.63811 * 10 9 8 12 12 C 1.53040 * 109.53502 * 298.63298 * 11 10 9 13 13 H 1.09004 * 109.50168 * 301.38456 * 12 11 10 14 14 N 1.46503 * 109.49587 * 181.31806 * 12 11 10 15 15 C 1.46495 * 119.99987 * 300.00215 * 14 12 11 16 16 C 1.36939 * 119.99815 * 119.99936 * 14 12 11 17 17 H 1.07998 * 119.99579 * 24.11030 * 16 14 12 18 18 C 1.38806 * 120.00005 * 204.10819 * 16 14 12 19 19 N 1.31617 * 120.00202 * 9.46740 * 18 16 14 20 20 Si 1.86803 * 120.00227 * 189.47104 * 18 16 14 21 21 H 1.48505 * 109.46912 * 59.99544 * 20 18 16 22 22 H 1.48502 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46908 * 300.00026 * 20 18 16 24 24 C 1.46923 * 120.62811 * 184.60560 * 8 6 4 25 25 C 1.50702 * 109.47124 * 185.76780 * 4 3 2 26 26 C 1.38226 * 119.61749 * 274.99404 * 25 4 3 27 27 C 1.38626 * 119.16604 * 180.02562 * 26 25 4 28 28 C 1.38670 * 118.41878 * 359.97438 * 27 26 25 29 29 C 1.38190 * 119.16146 * 359.97438 * 28 27 26 30 30 N 1.31853 * 119.62098 * 94.99740 * 25 4 3 31 31 H 1.09001 * 109.47603 * 300.00752 * 1 2 3 32 32 H 1.09005 * 109.46630 * 60.00651 * 1 2 3 33 33 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47676 * 239.99431 * 2 1 3 35 35 H 1.09005 * 109.46630 * 119.99349 * 2 1 3 36 36 H 1.09003 * 109.47354 * 64.61360 * 3 2 1 37 37 H 1.09002 * 109.46808 * 304.62122 * 3 2 1 38 38 H 1.08998 * 109.59003 * 246.15930 * 9 8 6 39 39 H 1.09006 * 109.58627 * 6.44488 * 9 8 6 40 40 H 1.08998 * 109.49543 * 174.58595 * 10 9 8 41 41 H 1.09000 * 109.49463 * 294.68660 * 10 9 8 42 42 H 1.08998 * 109.45814 * 58.65167 * 11 10 9 43 43 H 1.08997 * 109.45582 * 178.61716 * 11 10 9 44 44 H 1.09002 * 109.47251 * 95.16540 * 15 14 12 45 45 H 1.09004 * 109.47090 * 215.16314 * 15 14 12 46 46 H 1.08997 * 109.47302 * 335.16050 * 15 14 12 47 47 H 0.96998 * 120.00482 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.58654 * 353.41410 * 24 8 6 49 49 H 1.08998 * 109.58682 * 113.83782 * 24 8 6 50 50 H 1.08001 * 120.41609 * 0.02736 * 26 25 4 51 51 H 1.07996 * 120.79338 * 180.25673 * 27 26 25 52 52 H 1.07993 * 120.42318 * 180.02562 * 28 27 26 53 53 H 1.08001 * 119.61601 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4441 -0.1162 5 1 3.9905 0.8216 0.6713 6 6 3.9675 0.8964 -1.4614 7 8 3.1738 0.8978 -2.3784 8 7 5.2090 0.4049 -1.6452 9 6 6.1461 0.2978 -0.5188 10 6 6.6635 -1.1422 -0.4431 11 6 7.2593 -1.5377 -1.7962 12 6 6.1736 -1.4705 -2.8727 13 1 5.3544 -2.1381 -2.6055 14 7 6.7372 -1.8795 -4.1617 15 6 7.8566 -1.1333 -4.7415 16 6 6.2175 -2.9593 -4.8244 17 1 5.1999 -3.2690 -4.6375 18 6 6.9986 -3.6556 -5.7364 19 7 8.2865 -3.4006 -5.8297 20 14 6.2220 -4.9545 -6.8315 21 1 5.1652 -4.3299 -7.6673 22 1 7.2619 -5.5472 -7.7105 23 1 5.6212 -6.0186 -5.9876 24 6 5.6487 -0.0395 -2.9748 25 6 4.0787 2.8539 0.0260 26 6 4.1229 3.6797 -1.0816 27 6 4.5971 4.9746 -0.9403 28 6 5.0105 5.3927 0.3156 29 6 4.9361 4.5110 1.3771 30 7 4.4803 3.2854 1.2054 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8898 35 1 1.8932 -0.5138 0.8901 36 1 1.7458 1.9319 0.9284 37 1 1.6106 1.9796 -0.8457 38 1 6.9828 0.9790 -0.6735 39 1 5.6334 0.5533 0.4086 40 1 7.4315 -1.2127 0.3272 41 1 5.8395 -1.8124 -0.1985 42 1 8.0670 -0.8518 -2.0517 43 1 7.6504 -2.5534 -1.7377 44 1 8.7948 -1.6200 -4.4745 45 1 7.7550 -1.1107 -5.8265 46 1 7.8531 -0.1142 -4.3550 47 1 8.8323 -3.8869 -6.4673 48 1 4.8074 -0.0089 -3.6671 49 1 6.4440 0.6138 -3.3339 50 1 3.7921 3.3205 -2.0450 51 1 4.6393 5.6434 -1.7872 52 1 5.3852 6.3948 0.4624 53 1 5.2565 4.8288 2.3583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690818730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:15 Heat of formation + Delta-G solvation = -2.496202 kcal Electronic energy + Delta-G solvation = -31804.872816 eV Core-core repulsion = 27869.062366 eV Total energy + Delta-G solvation = -3935.810450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.01150 -40.69346 -39.10334 -36.83157 -36.43301 -34.15642 -33.52222 -33.15999 -32.90305 -30.73044 -29.90410 -28.07695 -26.88061 -25.71871 -25.14406 -24.49456 -23.23401 -23.02683 -22.39396 -20.79932 -19.79111 -18.85804 -18.55038 -17.88498 -17.33647 -16.96899 -16.77189 -16.26318 -16.07350 -15.92895 -15.69780 -15.34551 -15.26607 -15.10293 -14.57050 -14.46639 -14.43802 -14.31568 -14.00381 -13.79776 -13.74969 -13.69856 -13.26175 -12.90312 -12.85213 -12.77492 -12.63942 -12.51524 -12.32180 -12.24630 -12.06822 -11.96354 -11.89197 -11.80978 -11.66411 -11.57753 -11.41037 -10.85336 -10.81659 -10.66983 -10.44045 -9.93368 -9.73864 -8.76189 -7.84512 -5.35294 0.10313 0.32068 1.43401 1.45958 1.49325 1.52472 1.88707 2.48914 2.78187 3.18446 3.28240 3.40418 3.57905 3.80247 3.85203 3.87827 3.98833 4.02517 4.04771 4.12344 4.15277 4.19553 4.24461 4.25065 4.32737 4.41511 4.57436 4.59114 4.65755 4.70207 4.74800 4.79408 4.80232 4.84604 4.88039 4.92239 4.98736 5.00240 5.10508 5.18789 5.22395 5.25791 5.27879 5.35225 5.38831 5.42619 5.45835 5.48716 5.62140 5.71272 5.74925 6.31045 6.39123 6.97468 7.09540 7.13851 7.83826 8.27069 9.17307 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003064 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.061266 B = 9135.754927 C =10165.455492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.088 4.088 4 C -0.050 4.050 5 H 0.125 0.875 6 C 0.522 3.478 7 O -0.572 6.572 8 N -0.601 5.601 9 C 0.107 3.893 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.169 3.831 13 H 0.045 0.955 14 N -0.609 5.609 15 C 0.182 3.818 16 C -0.269 4.269 17 H 0.061 0.939 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.115 3.885 25 C 0.131 3.869 26 C -0.183 4.183 27 C -0.076 4.076 28 C -0.165 4.165 29 C 0.097 3.903 30 N -0.490 5.490 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.009 0.991 45 H 0.012 0.988 46 H 0.027 0.973 47 H 0.249 0.751 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.113 0.887 51 H 0.152 0.848 52 H 0.169 0.831 53 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 17.786 19.405 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.126 4.126 4 C -0.072 4.072 5 H 0.142 0.858 6 C 0.311 3.689 7 O -0.451 6.451 8 N -0.333 5.333 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.161 4.161 12 C 0.061 3.939 13 H 0.063 0.937 14 N -0.332 5.332 15 C 0.037 3.963 16 C -0.399 4.399 17 H 0.079 0.921 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.010 4.010 25 C -0.006 4.006 26 C -0.203 4.203 27 C -0.101 4.101 28 C -0.185 4.185 29 C -0.060 4.060 30 N -0.199 5.199 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.131 0.869 51 H 0.170 0.830 52 H 0.187 0.813 53 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.306 17.145 19.503 26.976 hybrid contribution 0.003 -0.536 -2.220 2.284 sum -7.303 16.609 17.283 25.058 Atomic orbital electron populations 1.21696 0.94619 1.02017 1.01970 1.21537 0.97203 0.95921 1.01613 1.21407 0.90362 0.98139 1.02709 1.20271 0.98868 0.93111 0.94936 0.85763 1.20749 0.80855 0.76991 0.90344 1.90679 1.51283 1.58101 1.45084 1.48220 1.13510 1.61591 1.10027 1.21996 0.92981 0.97564 0.88895 1.21885 1.01470 0.95689 0.96957 1.21924 0.98350 1.00721 0.95084 1.20602 0.94725 0.92905 0.85671 0.93711 1.44049 1.38072 1.31986 1.19094 1.20487 0.89641 0.90815 0.95334 1.19443 0.95117 1.05705 1.19620 0.92094 1.25751 0.95598 1.00419 1.02358 1.70195 1.04978 1.44500 1.38383 0.85353 0.77204 0.79264 0.78678 1.20787 1.21555 1.20156 1.21823 0.98866 0.96402 0.83912 1.20418 0.96163 0.94529 0.89478 1.22044 1.02273 0.96258 0.99700 1.21895 0.94145 0.94799 0.99304 1.22533 1.00342 1.02793 0.92786 1.23352 0.93897 0.87929 1.00857 1.67430 1.10818 1.17864 1.23836 0.91212 0.93604 0.92344 0.94241 0.90582 0.89433 0.92343 0.90670 0.87556 0.87959 0.91660 0.92480 0.93733 0.97253 0.96906 0.95416 0.94152 0.92191 0.91841 0.86899 0.82993 0.81347 0.79398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.91 71.98 0.71 -2.12 16 2 C -0.13 -2.81 5.78 30.59 0.18 -2.64 16 3 C -0.09 -1.96 4.34 30.59 0.13 -1.83 16 4 C -0.05 -1.17 1.69 -12.29 -0.02 -1.19 16 5 H 0.12 2.52 6.26 -2.38 -0.01 2.50 16 6 C 0.52 16.03 4.80 87.66 0.42 16.45 16 7 O -0.57 -21.97 14.14 -3.03 -0.04 -22.02 16 8 N -0.60 -18.28 2.98 -819.73 -2.44 -20.72 16 9 C 0.11 2.49 6.25 86.37 0.54 3.03 16 10 C -0.12 -3.00 6.08 30.68 0.19 -2.82 16 11 C -0.12 -4.24 5.15 30.62 0.16 -4.08 16 12 C 0.17 7.10 2.72 44.93 0.12 7.22 16 13 H 0.04 2.03 7.87 -2.39 -0.02 2.01 16 14 N -0.61 -31.41 2.81 -703.15 -1.98 -33.39 16 15 C 0.18 9.15 8.02 127.77 1.02 10.17 16 16 C -0.27 -15.39 9.59 84.03 0.81 -14.58 16 17 H 0.06 3.48 7.82 -2.91 -0.02 3.46 16 18 C -0.05 -2.63 5.17 84.86 0.44 -2.19 16 19 N -0.93 -55.82 10.59 21.65 0.23 -55.60 16 20 Si 0.97 46.42 29.56 68.60 2.03 48.45 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 24 C 0.11 4.34 5.78 86.22 0.50 4.84 16 25 C 0.13 2.91 5.65 42.55 0.24 3.15 16 26 C -0.18 -4.16 9.18 22.36 0.21 -3.95 16 27 C -0.08 -1.25 10.18 22.47 0.23 -1.02 16 28 C -0.17 -2.00 10.11 22.36 0.23 -1.78 16 29 C 0.10 1.33 11.18 84.67 0.95 2.27 16 30 N -0.49 -9.49 10.27 -183.88 -1.89 -11.38 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.04 1.14 6.71 -2.39 -0.02 1.13 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.51 7.67 -2.39 -0.02 1.50 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.11 2.01 5.41 -2.38 -0.01 2.00 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.98 7.72 -2.39 -0.02 1.97 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.01 0.50 7.33 -2.39 -0.02 0.48 16 45 H 0.01 0.68 7.32 -2.39 -0.02 0.66 16 46 H 0.03 1.19 6.35 -2.39 -0.02 1.17 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.06 2.63 7.00 -2.39 -0.02 2.62 16 49 H 0.06 2.37 6.48 -2.39 -0.02 2.35 16 50 H 0.11 3.08 6.91 -2.91 -0.02 3.06 16 51 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 52 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 53 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -71.75 409.85 3.83 -67.92 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.88 Total: 17.79 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 7.04 Total: 8.94 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -6.08 Total: -121.09 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.02 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -71.75 3.83 -67.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690818730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.422 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds