Wall clock time and date at job start Wed Apr 1 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46881 * 2 1 4 4 C 1.53004 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47258 * 305.32477 * 4 3 2 6 6 C 1.50701 * 109.47063 * 185.32358 * 4 3 2 7 7 O 1.21286 * 120.00035 * 236.08995 * 6 4 3 8 8 N 1.34773 * 120.00062 * 56.08704 * 6 4 3 9 9 C 1.48124 * 127.03506 * 184.87362 * 8 6 4 10 10 C 1.54597 * 103.42348 * 219.28660 * 9 8 6 11 11 C 1.54621 * 102.91345 * 322.86977 * 10 9 8 12 12 C 1.53001 * 110.41244 * 262.76472 * 11 10 9 13 13 C 1.53000 * 110.33014 * 140.58967 * 11 10 9 14 14 N 1.46502 * 109.46932 * 64.37512 * 13 11 10 15 15 C 1.36933 * 119.99620 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00502 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99976 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99633 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00322 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46915 * 89.99993 * 19 17 15 21 21 H 1.48500 * 109.47057 * 210.00118 * 19 17 15 22 22 H 1.48498 * 109.47181 * 330.00223 * 19 17 15 23 23 C 1.47486 * 127.03439 * 5.19017 * 8 6 4 24 24 C 1.50697 * 109.47168 * 65.32537 * 4 3 2 25 25 C 1.38230 * 119.61781 * 84.72645 * 24 4 3 26 26 C 1.38627 * 119.15942 * 180.30363 * 25 24 4 27 27 C 1.38672 * 118.42327 * 359.97438 * 26 25 24 28 28 C 1.38186 * 119.16305 * 0.02562 * 27 26 25 29 29 N 1.31856 * 119.61859 * 264.99748 * 24 4 3 30 30 H 1.08999 * 109.47078 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47332 * 299.99967 * 1 2 3 32 32 H 1.08999 * 109.47579 * 60.00285 * 1 2 3 33 33 H 1.08994 * 109.47332 * 240.00033 * 2 1 3 34 34 H 1.08999 * 109.47579 * 119.99715 * 2 1 3 35 35 H 1.08993 * 109.47408 * 60.00349 * 3 2 1 36 36 H 1.08996 * 109.47114 * 299.99817 * 3 2 1 37 37 H 1.08999 * 110.66267 * 337.77233 * 9 8 6 38 38 H 1.09004 * 110.65763 * 100.88863 * 9 8 6 39 39 H 1.09000 * 110.83742 * 204.44529 * 10 9 8 40 40 H 1.08999 * 110.73154 * 81.23851 * 10 9 8 41 41 H 1.08995 * 109.47227 * 175.67359 * 12 11 10 42 42 H 1.09005 * 109.46706 * 295.66804 * 12 11 10 43 43 H 1.08997 * 109.47313 * 55.67053 * 12 11 10 44 44 H 1.08994 * 109.47590 * 184.37900 * 13 11 10 45 45 H 1.09004 * 109.47078 * 304.38000 * 13 11 10 46 46 H 0.96998 * 120.00225 * 0.02562 * 14 13 11 47 47 H 0.97001 * 119.99845 * 180.02562 * 18 17 15 48 48 H 1.09003 * 109.91490 * 273.87830 * 23 8 6 49 49 H 1.09003 * 109.91189 * 35.15897 * 23 8 6 50 50 H 1.07992 * 120.42034 * 0.25251 * 25 24 4 51 51 H 1.08000 * 120.79127 * 179.97438 * 26 25 24 52 52 H 1.08005 * 120.41981 * 179.97438 * 27 26 25 53 53 H 1.07995 * 119.61586 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8485 0.8393 6 6 4.0722 2.8573 0.1325 7 8 4.8271 3.3128 -0.7003 8 7 3.6824 3.6163 1.1757 9 6 3.9959 5.0456 1.4055 10 6 4.2511 5.1167 2.9286 11 6 3.2115 4.1248 3.4998 12 6 1.9640 4.8733 3.9735 13 6 3.8191 3.3232 4.6526 14 7 4.1443 4.2277 5.7582 15 6 4.7023 3.7325 6.9065 16 1 4.9030 2.6751 6.9969 17 6 5.0100 4.5894 7.9543 18 7 4.7650 5.8779 7.8442 19 14 5.7718 3.9139 9.5204 20 1 7.2518 3.9322 9.3988 21 1 5.3595 4.7538 10.6736 22 1 5.3099 2.5189 9.7339 23 6 2.8618 3.1919 2.3254 24 6 4.0728 0.8492 -1.2901 25 6 4.1969 1.6522 -2.4084 26 6 4.6544 1.0951 -3.5925 27 6 4.9720 -0.2547 -3.6075 28 6 4.8224 -0.9946 -2.4501 29 7 4.3843 -0.4310 -1.3411 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 4.8889 5.3372 0.8527 38 1 3.1492 5.6742 1.1297 39 1 4.0714 6.1236 3.3053 40 1 5.2644 4.7926 3.1656 41 1 1.2122 4.1555 4.3014 42 1 2.2270 5.5287 4.8039 43 1 1.5641 5.4690 3.1530 44 1 3.1023 2.5761 4.9933 45 1 4.7270 2.8262 4.3108 46 1 3.9638 5.1773 5.6772 47 1 4.9803 6.4768 8.5763 48 1 1.8036 3.2841 2.0804 49 1 3.0962 2.1604 2.5883 50 1 3.9398 2.7000 -2.3605 51 1 4.7610 1.6979 -4.4823 52 1 5.3309 -0.7220 -4.5127 53 1 5.0680 -2.0462 -2.4534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699850578.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:20 Heat of formation + Delta-G solvation = -11.152827 kcal Electronic energy + Delta-G solvation = -31177.786850 eV Core-core repulsion = 27241.601021 eV Total energy + Delta-G solvation = -3936.185830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.98598 -40.81212 -39.29416 -36.83274 -36.42672 -34.27225 -33.40433 -33.04190 -32.16738 -31.08990 -29.68891 -27.75045 -27.23825 -26.01472 -24.63563 -24.48836 -24.11577 -23.00152 -21.83127 -20.38500 -20.08542 -19.16854 -18.24321 -17.74909 -17.22464 -16.96403 -16.77416 -16.41817 -16.05483 -16.00532 -15.70461 -15.22682 -15.12014 -14.94662 -14.90714 -14.43535 -14.24709 -14.14291 -14.04172 -13.82619 -13.58960 -13.28666 -13.20764 -13.07056 -12.94630 -12.89728 -12.77065 -12.57175 -12.38091 -12.14840 -12.09665 -12.06065 -11.95925 -11.65687 -11.57038 -11.39522 -11.31337 -10.93991 -10.88961 -10.57102 -10.37362 -9.84398 -9.73278 -8.95228 -7.93464 -5.20221 0.19784 0.41158 1.46830 1.47784 1.48690 1.56918 1.83600 2.56885 2.88607 3.20495 3.28855 3.39993 3.48479 3.72018 3.83340 3.91749 3.96064 4.01743 4.09161 4.23421 4.24862 4.26940 4.27533 4.31541 4.38342 4.40005 4.46626 4.59387 4.67932 4.70015 4.74526 4.77808 4.84084 4.87846 4.91051 4.95667 4.96538 5.03419 5.08589 5.12649 5.20365 5.25576 5.27255 5.29150 5.34008 5.36664 5.41721 5.49875 5.51707 5.56929 5.82558 6.29604 6.46486 6.98802 7.07424 7.37061 8.13893 8.37945 9.29895 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002442 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.878566 B =11464.274150 C =11533.782563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.049 4.049 5 H 0.111 0.889 6 C 0.538 3.462 7 O -0.570 6.570 8 N -0.612 5.612 9 C 0.111 3.889 10 C -0.116 4.116 11 C -0.072 4.072 12 C -0.126 4.126 13 C 0.166 3.834 14 N -0.737 5.737 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.291 1.291 21 H -0.295 1.295 22 H -0.270 1.270 23 C 0.113 3.887 24 C 0.123 3.877 25 C -0.150 4.150 26 C -0.090 4.090 27 C -0.168 4.168 28 C 0.079 3.921 29 N -0.498 5.498 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.028 0.972 45 H 0.006 0.994 46 H 0.378 0.622 47 H 0.250 0.750 48 H 0.106 0.894 49 H 0.083 0.917 50 H 0.133 0.867 51 H 0.153 0.847 52 H 0.165 0.835 53 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.001 -10.582 -24.288 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.142 4.142 4 C -0.071 4.071 5 H 0.129 0.871 6 C 0.327 3.673 7 O -0.450 6.450 8 N -0.344 5.344 9 C -0.011 4.011 10 C -0.155 4.155 11 C -0.073 4.073 12 C -0.184 4.184 13 C 0.039 3.961 14 N -0.381 5.381 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.797 3.203 20 H -0.219 1.219 21 H -0.221 1.221 22 H -0.195 1.195 23 C -0.009 4.009 24 C -0.014 4.014 25 C -0.169 4.169 26 C -0.116 4.116 27 C -0.188 4.188 28 C -0.078 4.078 29 N -0.207 5.207 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.046 0.954 45 H 0.024 0.976 46 H 0.212 0.788 47 H 0.059 0.941 48 H 0.124 0.876 49 H 0.101 0.899 50 H 0.151 0.849 51 H 0.171 0.829 52 H 0.182 0.818 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.619 -11.058 -23.943 27.747 hybrid contribution 1.087 0.821 0.540 1.465 sum -7.533 -10.238 -23.404 26.633 Atomic orbital electron populations 1.21749 0.94576 1.02095 1.02238 1.21424 0.96485 0.95127 1.02155 1.21737 0.89266 0.99126 1.04097 1.20082 0.98935 0.91547 0.96556 0.87084 1.20257 0.79731 0.87425 0.79894 1.90666 1.37155 1.74729 1.42480 1.48757 1.52164 1.11879 1.21632 1.22455 1.01853 0.81615 0.95164 1.22606 0.98461 1.00130 0.94275 1.21557 0.96393 0.95553 0.93826 1.21752 0.95458 1.00091 1.01085 1.20846 0.95743 0.92269 0.87246 1.42509 1.74711 1.07071 1.13795 1.19588 1.31503 0.93087 0.93188 0.91083 1.25467 1.03596 0.95842 1.01634 1.69792 1.55550 1.03047 1.33363 0.85223 0.77874 0.77580 0.79597 1.21871 1.22125 1.19521 1.22440 0.96040 0.98924 0.83513 1.20520 0.96667 0.89948 0.94288 1.22255 0.99892 1.01282 0.93512 1.21946 0.95563 0.95869 0.98248 1.22478 1.00751 0.94677 1.00871 1.23189 0.95157 1.01475 0.87943 1.67374 1.11569 1.11761 1.30006 0.92357 0.91775 0.92741 0.93055 0.91648 0.88701 0.91360 0.91118 0.88414 0.89871 0.93388 0.91595 0.94041 0.90389 0.95440 0.97562 0.78840 0.94069 0.87591 0.89860 0.84923 0.82898 0.81782 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.11 -1.88 5.72 30.59 0.17 -1.70 16 3 C -0.10 -1.79 4.54 30.60 0.14 -1.65 16 4 C -0.05 -1.12 1.94 -12.29 -0.02 -1.14 16 5 H 0.11 2.60 8.00 -2.39 -0.02 2.58 16 6 C 0.54 14.40 6.98 87.66 0.61 15.01 16 7 O -0.57 -18.70 13.50 -3.05 -0.04 -18.74 16 8 N -0.61 -14.86 3.26 -810.04 -2.64 -17.50 16 9 C 0.11 2.71 7.09 86.61 0.61 3.32 16 10 C -0.12 -3.39 5.72 31.69 0.18 -3.21 16 11 C -0.07 -2.01 0.67 -51.29 -0.03 -2.04 16 12 C -0.13 -3.26 8.05 71.98 0.58 -2.68 16 13 C 0.17 6.22 4.84 86.38 0.42 6.63 16 14 N -0.74 -35.86 5.12 -343.45 -1.76 -37.62 16 15 C -0.24 -13.30 9.99 84.03 0.84 -12.46 16 16 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 18 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 19 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 C 0.11 2.42 4.50 86.53 0.39 2.81 16 24 C 0.12 3.01 4.87 42.55 0.21 3.22 16 25 C -0.15 -3.53 8.26 22.36 0.18 -3.35 16 26 C -0.09 -1.65 10.18 22.47 0.23 -1.42 16 27 C -0.17 -2.58 10.11 22.36 0.23 -2.35 16 28 C 0.08 1.44 11.18 84.67 0.95 2.39 16 29 N -0.50 -11.80 9.61 -183.89 -1.77 -13.57 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.99 6.90 -2.39 -0.02 0.97 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.39 4.80 -2.39 -0.01 1.37 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.90 7.82 -2.39 -0.02 1.88 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.44 7.86 -2.39 -0.02 2.42 16 40 H 0.05 1.69 7.84 -2.39 -0.02 1.67 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.36 6.75 -2.38 -0.02 1.34 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.01 0.26 8.11 -2.39 -0.02 0.24 16 46 H 0.38 19.31 6.18 -92.71 -0.57 18.74 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.11 1.66 6.44 -2.39 -0.02 1.65 16 49 H 0.08 1.73 7.21 -2.39 -0.02 1.72 16 50 H 0.13 3.39 6.09 -2.91 -0.02 3.37 16 51 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 52 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 53 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.70 413.05 3.28 -67.42 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.32 Total: 33.43 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 6.86 Total: -3.57 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -5.89 Total: -126.60 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.04 Total: -18.74 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -70.70 3.28 -67.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699850578.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.266 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds