Wall clock time and date at job start Wed Apr 1 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47463 * 2 1 4 4 C 1.53005 * 109.47329 * 120.00132 * 2 1 3 5 5 H 1.09003 * 109.46628 * 303.79110 * 4 2 1 6 6 C 1.50696 * 109.47118 * 63.78549 * 4 2 1 7 7 O 1.21286 * 119.99890 * 34.67319 * 6 4 2 8 8 N 1.34777 * 120.00521 * 214.67371 * 6 4 2 9 9 C 1.47029 * 125.64499 * 354.79102 * 8 6 4 10 10 C 1.54322 * 107.27300 * 178.91820 * 9 8 6 11 11 C 1.55162 * 102.94164 * 337.80695 * 10 9 8 12 12 H 1.09000 * 111.00332 * 277.39195 * 11 10 9 13 13 C 1.52998 * 111.00357 * 153.57359 * 11 10 9 14 14 C 1.53003 * 109.47140 * 66.45332 * 13 11 10 15 15 N 1.46496 * 109.47337 * 179.97438 * 14 13 11 16 16 C 1.36934 * 120.00114 * 179.72813 * 15 14 13 17 17 H 1.07993 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99997 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00083 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00089 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.46965 * 90.00061 * 20 18 16 22 22 H 1.48495 * 109.47402 * 209.99840 * 20 18 16 23 23 H 1.48498 * 109.47070 * 330.00263 * 20 18 16 24 24 C 1.47419 * 125.65246 * 174.76580 * 8 6 4 25 25 C 1.50690 * 109.47371 * 183.78997 * 4 2 1 26 26 C 1.38684 * 120.41953 * 119.72084 * 25 4 2 27 27 C 1.38628 * 118.41986 * 179.78069 * 26 25 4 28 28 C 1.38232 * 119.15869 * 0.47186 * 27 26 25 29 29 N 1.31850 * 120.76782 * 359.77080 * 28 27 26 30 30 C 1.31891 * 121.72230 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47298 * 294.86671 * 1 2 3 32 32 H 1.09004 * 109.47290 * 54.86212 * 1 2 3 33 33 H 1.09000 * 109.47282 * 174.86319 * 1 2 3 34 34 H 1.09001 * 109.46966 * 239.99742 * 2 1 3 35 35 H 1.08999 * 109.47409 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47391 * 300.00080 * 3 2 1 37 37 H 1.09001 * 109.47240 * 59.99910 * 3 2 1 38 38 H 1.08999 * 109.87907 * 59.50109 * 9 8 6 39 39 H 1.09002 * 109.88304 * 298.33863 * 9 8 6 40 40 H 1.08992 * 110.72259 * 219.44466 * 10 9 8 41 41 H 1.09001 * 110.87335 * 96.23957 * 10 9 8 42 42 H 1.09000 * 109.47351 * 306.45532 * 13 11 10 43 43 H 1.08998 * 109.47324 * 186.45525 * 13 11 10 44 44 H 1.09000 * 109.46836 * 59.99884 * 14 13 11 45 45 H 1.08998 * 109.47170 * 300.00287 * 14 13 11 46 46 H 0.97002 * 120.00045 * 0.02562 * 15 14 13 47 47 H 0.96993 * 119.99898 * 180.02562 * 19 18 16 48 48 H 1.09002 * 110.36857 * 85.31353 * 24 8 6 49 49 H 1.08997 * 110.36995 * 322.98878 * 24 8 6 50 50 H 1.07994 * 120.78726 * 0.02562 * 26 25 4 51 51 H 1.07991 * 120.41828 * 180.26645 * 27 26 25 52 52 H 1.07996 * 119.61470 * 179.79360 * 28 27 26 53 53 H 1.08000 * 119.61237 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6222 -0.2481 2.1379 6 6 1.6157 -2.1666 1.2032 7 8 1.5590 -2.7484 0.1405 8 7 1.2993 -2.8127 2.3429 9 6 1.4271 -2.2659 3.7017 10 6 0.9235 -3.3477 4.6802 11 6 0.0120 -4.2285 3.7854 12 1 -0.9827 -3.7927 3.6921 13 6 -0.0673 -5.6588 4.3230 14 6 -0.7888 -5.6572 5.6722 15 7 -0.8653 -7.0266 6.1868 16 6 -1.4674 -7.2727 7.3918 17 1 -1.8862 -6.4572 7.9626 18 6 -1.5394 -8.5703 7.8796 19 7 -2.1176 -8.8067 9.0381 20 14 -0.8155 -9.9809 6.8919 21 1 0.6045 -10.1789 7.2791 22 1 -1.5815 -11.2228 7.1678 23 1 -0.8938 -9.6625 5.4435 24 6 0.7673 -4.1846 2.4335 25 6 3.5440 -0.6405 1.2971 26 6 4.1805 -0.0245 2.3642 27 6 5.5660 0.0223 2.3682 28 6 6.2617 -0.5338 1.3111 29 7 5.6229 -1.1073 0.3104 30 6 4.3062 -1.1745 0.2758 31 1 -0.3634 0.4322 0.9324 32 1 -0.3634 0.5915 -0.8404 33 1 -0.3634 -1.0235 -0.0920 34 1 1.8932 -0.5139 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 0.8186 -1.3667 3.7981 39 1 2.4712 -2.0336 3.9112 40 1 0.3498 -2.8979 5.4905 41 1 1.7550 -3.9309 5.0759 42 1 0.9399 -6.0555 4.4502 43 1 -0.6170 -6.2821 3.6178 44 1 -1.7961 -5.2604 5.5451 45 1 -0.2392 -5.0338 6.3774 46 1 -0.4856 -7.7586 5.6759 47 1 -2.1676 -9.7134 9.3791 48 1 1.5822 -4.9085 2.4306 49 1 0.0816 -4.3808 1.6093 50 1 3.6104 0.4049 3.1747 51 1 6.0949 0.4903 3.1852 52 1 7.3411 -0.4985 1.3051 53 1 3.8180 -1.6526 -0.5606 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700080327.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:19 Heat of formation + Delta-G solvation = -24.622964 kcal Electronic energy + Delta-G solvation = -30452.881447 eV Core-core repulsion = 26516.111508 eV Total energy + Delta-G solvation = -3936.769939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.96517 -40.71011 -39.15619 -37.12891 -36.89648 -34.59578 -33.58054 -32.97680 -32.43064 -30.69274 -29.69968 -28.20351 -27.91387 -25.52900 -24.65680 -24.09979 -23.46934 -23.07281 -21.50733 -21.24266 -19.98368 -19.57466 -18.43907 -18.13630 -17.31392 -17.03525 -16.79276 -16.61677 -16.31426 -15.87495 -15.72750 -15.44040 -15.12211 -14.79740 -14.70078 -14.54700 -14.36245 -14.21517 -14.10960 -13.97752 -13.56206 -13.49719 -13.37211 -13.19107 -13.06740 -12.92825 -12.85191 -12.82452 -12.42827 -12.15744 -12.06880 -11.89901 -11.89008 -11.77695 -11.63027 -11.56268 -11.51124 -11.10125 -10.95119 -10.66522 -10.41403 -9.91612 -9.69827 -9.28782 -8.03083 -5.36286 0.07798 0.32155 1.38080 1.40830 1.48402 1.51945 1.90781 2.48162 2.80178 3.28469 3.31987 3.42487 3.50342 3.64613 3.66178 3.71616 3.76586 3.95129 3.99674 4.04104 4.07008 4.18606 4.27507 4.33191 4.35154 4.43753 4.48774 4.54135 4.58625 4.62311 4.66621 4.75174 4.77929 4.81435 4.83736 4.86216 4.94805 4.96037 4.97739 5.08910 5.17042 5.20057 5.20345 5.24187 5.28890 5.35302 5.35523 5.42313 5.45104 5.74735 5.76290 6.21485 6.46713 6.99924 7.06559 7.08321 7.85681 8.03192 9.18351 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.002082 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.460552 B =13443.615563 C =14042.626369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.044 4.044 5 H 0.127 0.873 6 C 0.533 3.467 7 O -0.578 6.578 8 N -0.617 5.617 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.084 4.084 12 H 0.092 0.908 13 C -0.108 4.108 14 C 0.156 3.844 15 N -0.764 5.764 16 C -0.234 4.234 17 H 0.059 0.941 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.252 1.252 24 C 0.110 3.890 25 C -0.126 4.126 26 C -0.064 4.064 27 C -0.162 4.162 28 C 0.081 3.919 29 N -0.517 5.517 30 C 0.091 3.909 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.035 0.965 46 H 0.365 0.635 47 H 0.258 0.742 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.170 0.830 51 H 0.170 0.830 52 H 0.175 0.825 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.206 26.994 -16.861 34.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.194 4.194 4 C -0.066 4.066 5 H 0.145 0.855 6 C 0.323 3.677 7 O -0.458 6.458 8 N -0.350 5.350 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.104 4.104 12 H 0.110 0.890 13 C -0.146 4.146 14 C 0.030 3.970 15 N -0.409 5.409 16 C -0.365 4.365 17 H 0.077 0.923 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.782 3.218 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.177 1.177 24 C -0.012 4.012 25 C -0.128 4.128 26 C -0.089 4.089 27 C -0.181 4.181 28 C -0.075 4.075 29 N -0.226 5.226 30 C -0.065 4.065 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.198 0.802 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.188 0.812 51 H 0.188 0.812 52 H 0.192 0.808 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.575 26.451 -18.000 35.158 hybrid contribution -0.376 -1.352 0.277 1.430 sum 14.200 25.099 -17.723 33.848 Atomic orbital electron populations 1.21842 0.94148 1.01138 1.03237 1.20991 0.96369 0.96730 0.95471 1.21774 1.00510 0.93947 1.03196 1.20341 0.92034 0.91165 1.03064 0.85515 1.20602 0.75999 0.89069 0.82055 1.90686 1.54918 1.69484 1.30679 1.48638 1.63708 1.15643 1.06984 1.22315 1.02500 0.97998 0.79525 1.22751 0.99644 0.96404 0.97544 1.22165 0.99687 0.95247 0.93261 0.88951 1.21570 1.00944 0.96304 0.95830 1.20789 0.97524 0.84994 0.93662 1.42806 1.70738 1.05535 1.21854 1.19060 1.28392 0.93513 0.95524 0.92333 1.25535 1.01977 1.00087 0.98201 1.69882 1.51254 1.20662 1.21653 0.85404 0.78006 0.78819 0.79533 1.20352 1.22329 1.17710 1.22222 0.97363 0.83603 0.98058 1.20378 0.94675 1.01076 0.96708 1.21917 0.95157 0.94980 0.96871 1.22524 0.94846 1.00363 1.00385 1.23322 1.01819 0.92966 0.89434 1.67694 1.10463 1.16613 1.27799 1.22574 0.89567 0.96380 0.97979 0.90900 0.91321 0.94721 0.92182 0.93430 0.91785 0.90650 0.88578 0.89999 0.88320 0.90517 0.91355 0.91790 0.95939 0.94738 0.80226 0.93349 0.92040 0.91611 0.81245 0.81217 0.80782 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.90 71.98 0.64 -1.41 16 2 C -0.08 -1.12 2.01 -10.80 -0.02 -1.14 16 3 C -0.14 -1.41 8.89 71.98 0.64 -0.77 16 4 C -0.04 -0.63 1.61 -12.29 -0.02 -0.65 16 5 H 0.13 1.05 6.70 -2.39 -0.02 1.03 16 6 C 0.53 11.56 5.62 87.66 0.49 12.05 16 7 O -0.58 -17.41 15.69 -3.05 -0.05 -17.45 16 8 N -0.62 -11.83 3.33 -811.78 -2.70 -14.53 16 9 C 0.10 1.22 6.21 86.73 0.54 1.76 16 10 C -0.13 -1.96 5.59 31.78 0.18 -1.78 16 11 C -0.08 -1.66 3.07 -9.40 -0.03 -1.69 16 12 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.11 -2.82 4.84 30.59 0.15 -2.67 16 14 C 0.16 5.44 6.11 86.38 0.53 5.97 16 15 N -0.76 -35.08 5.41 -343.47 -1.86 -36.94 16 16 C -0.23 -13.28 10.47 84.03 0.88 -12.40 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 19 N -0.98 -63.03 13.97 21.65 0.30 -62.73 16 20 Si 0.96 45.47 27.73 68.60 1.90 47.37 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.25 -10.86 6.52 99.48 0.65 -10.22 16 24 C 0.11 2.39 6.36 86.86 0.55 2.94 16 25 C -0.13 -1.89 3.33 -19.78 -0.07 -1.95 16 26 C -0.06 -0.59 9.81 22.47 0.22 -0.37 16 27 C -0.16 -1.48 10.11 22.36 0.23 -1.25 16 28 C 0.08 1.16 11.18 84.69 0.95 2.10 16 29 N -0.52 -11.11 10.36 -195.84 -2.03 -13.14 16 30 C 0.09 1.93 10.03 84.67 0.85 2.78 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.03 0.66 7.27 -2.39 -0.02 0.64 16 34 H 0.06 1.19 7.13 -2.39 -0.02 1.18 16 35 H 0.05 0.57 7.11 -2.39 -0.02 0.56 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.73 7.62 -2.39 -0.02 0.71 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 1.38 8.13 -2.39 -0.02 1.36 16 41 H 0.08 1.30 8.01 -2.39 -0.02 1.28 16 42 H 0.07 1.76 8.11 -2.39 -0.02 1.74 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.03 1.18 7.51 -2.39 -0.02 1.16 16 46 H 0.36 16.04 5.53 -92.71 -0.51 15.53 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 48 H 0.06 1.42 8.04 -2.39 -0.02 1.40 16 49 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 50 H 0.17 0.41 8.00 -2.91 -0.02 0.39 16 51 H 0.17 0.41 8.06 -2.92 -0.02 0.38 16 52 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 53 H 0.13 3.31 7.18 -2.91 -0.02 3.29 16 Total: -1.00 -78.40 418.93 3.05 -75.35 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.31 Total: 24.01 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 7.17 Total: -1.95 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -6.28 Total: -127.34 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -78.40 3.05 -75.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700080327.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.728 kcal (2) G-P(sol) polarization free energy of solvation -78.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds