Wall clock time and date at job start Wed Apr 1 2020 03:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 C 1.53001 * 109.46897 * 120.00359 * 2 1 3 5 5 H 1.09005 * 109.46925 * 295.91875 * 4 2 1 6 6 C 1.50700 * 109.46799 * 175.92938 * 4 2 1 7 7 O 1.21276 * 120.00393 * 328.69317 * 6 4 2 8 8 N 1.34778 * 119.99964 * 148.70025 * 6 4 2 9 9 C 1.47025 * 125.65083 * 355.05731 * 8 6 4 10 10 C 1.54320 * 107.27401 * 178.90300 * 9 8 6 11 11 C 1.55155 * 102.94125 * 337.80573 * 10 9 8 12 12 H 1.09004 * 111.00376 * 277.42381 * 11 10 9 13 13 C 1.53004 * 111.00525 * 153.57657 * 11 10 9 14 14 C 1.52992 * 109.47243 * 66.45073 * 13 11 10 15 15 N 1.46500 * 109.47603 * 179.97438 * 14 13 11 16 16 C 1.36938 * 120.00461 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99659 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00160 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00185 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47000 * 90.00401 * 20 18 16 22 22 H 1.48498 * 109.47259 * 210.00135 * 20 18 16 23 23 H 1.48499 * 109.46968 * 330.00501 * 20 18 16 24 24 C 1.47432 * 125.64978 * 175.00842 * 8 6 4 25 25 C 1.50691 * 109.47703 * 55.92322 * 4 2 1 26 26 C 1.38667 * 120.42226 * 240.00275 * 25 4 2 27 27 C 1.38631 * 118.42220 * 180.02562 * 26 25 4 28 28 C 1.38228 * 119.16297 * 359.97438 * 27 26 25 29 29 N 1.31856 * 120.76140 * 359.97438 * 28 27 26 30 30 C 1.31888 * 121.72469 * 359.71358 * 29 28 27 31 31 H 1.08998 * 109.47325 * 299.99778 * 1 2 3 32 32 H 1.08997 * 109.47555 * 60.00159 * 1 2 3 33 33 H 1.09004 * 109.47265 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47134 * 239.99715 * 2 1 3 35 35 H 1.09006 * 109.46868 * 176.12016 * 3 2 1 36 36 H 1.08993 * 109.47050 * 296.11620 * 3 2 1 37 37 H 1.09000 * 109.47246 * 56.11979 * 3 2 1 38 38 H 1.09001 * 109.88251 * 59.48380 * 9 8 6 39 39 H 1.09007 * 109.87831 * 298.32261 * 9 8 6 40 40 H 1.08998 * 110.72331 * 219.44308 * 10 9 8 41 41 H 1.09007 * 110.72089 * 96.16750 * 10 9 8 42 42 H 1.08997 * 109.46938 * 186.45305 * 13 11 10 43 43 H 1.09006 * 109.46793 * 306.45389 * 13 11 10 44 44 H 1.09006 * 109.47601 * 300.00549 * 14 13 11 45 45 H 1.09004 * 109.47175 * 59.99923 * 14 13 11 46 46 H 0.97000 * 119.99767 * 0.02562 * 15 14 13 47 47 H 0.96994 * 120.00335 * 179.97438 * 19 18 16 48 48 H 1.09002 * 110.36059 * 85.32837 * 24 8 6 49 49 H 1.08999 * 110.45923 * 323.05694 * 24 8 6 50 50 H 1.08003 * 120.79115 * 0.02562 * 26 25 4 51 51 H 1.08004 * 120.41886 * 179.97438 * 27 26 25 52 52 H 1.07994 * 119.61802 * 180.02562 * 28 27 26 53 53 H 1.07999 * 119.61665 * 180.31420 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.7375 -0.1670 2.1377 6 6 3.5435 -0.8093 1.1998 7 8 4.1114 -0.8923 0.1314 8 7 4.2573 -0.7958 2.3430 9 6 3.7096 -0.5974 3.6929 10 6 4.8891 -0.6879 4.6839 11 6 5.9497 -1.4944 3.8889 12 1 5.7576 -2.5653 3.9566 13 6 7.3642 -1.1619 4.3683 14 6 7.5452 -1.6563 5.8048 15 7 8.8997 -1.3386 6.2637 16 6 9.2938 -1.6870 7.5280 17 1 8.6061 -2.1965 8.1867 18 6 10.5773 -1.3864 7.9625 19 7 11.4156 -0.7660 7.1595 20 14 11.1151 -1.8624 9.6870 21 1 11.7099 -3.2228 9.6622 22 1 12.1246 -0.8897 10.1768 23 1 9.9384 -1.8530 10.5927 24 6 5.7165 -0.9784 2.4471 25 6 1.4569 -2.1099 1.3008 26 6 0.6696 -2.5016 2.3730 27 6 0.1549 -3.7888 2.3783 28 6 0.4410 -4.6329 1.3218 29 7 1.1928 -4.2260 0.3179 30 6 1.6941 -3.0068 0.2766 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1278 1.4432 0.0695 36 1 1.7346 1.9358 -0.9227 37 1 1.6210 1.9760 0.8532 38 1 2.9788 -1.3753 3.9144 39 1 3.2414 0.3845 3.7624 40 1 4.5944 -1.2232 5.5864 41 1 5.2642 0.3059 4.9287 42 1 8.0916 -1.6517 3.7211 43 1 7.5153 -0.0830 4.3337 44 1 6.8176 -1.1666 6.4521 45 1 7.3940 -2.7353 5.8395 46 1 9.5172 -0.8807 5.6721 47 1 12.3124 -0.5555 7.4633 48 1 6.2293 -0.0284 2.2965 49 1 6.0612 -1.7141 1.7204 50 1 0.4624 -1.8200 3.1848 51 1 -0.4619 -4.1277 3.1976 52 1 0.0435 -5.6370 1.3181 53 1 2.3015 -2.7077 -0.5648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700080330.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:29 Heat of formation + Delta-G solvation = -27.689726 kcal Electronic energy + Delta-G solvation = -30444.044378 eV Core-core repulsion = 26507.141455 eV Total energy + Delta-G solvation = -3936.902924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.96375 -40.70418 -39.15304 -37.06436 -36.79463 -34.58873 -33.55685 -32.70365 -32.35101 -30.60710 -29.55458 -28.11067 -27.89146 -25.72486 -24.65547 -24.15208 -23.48132 -23.11617 -21.45391 -21.22739 -19.93127 -19.13861 -18.39506 -18.15104 -17.34095 -17.03409 -16.77464 -16.63838 -16.29918 -15.84780 -15.43109 -15.32837 -15.24150 -15.02523 -14.80786 -14.45403 -14.37907 -14.07741 -13.98297 -13.80830 -13.59781 -13.50111 -13.20223 -13.08286 -13.03852 -12.87866 -12.82239 -12.77951 -12.34924 -12.19199 -12.12515 -11.96308 -11.88306 -11.70439 -11.60109 -11.56304 -11.49902 -11.10374 -10.91555 -10.65912 -10.40664 -9.90700 -9.69468 -8.99636 -7.95077 -5.24280 0.08404 0.33041 1.47672 1.49816 1.52606 1.58212 1.90983 2.56508 2.81016 3.32698 3.38892 3.42796 3.57891 3.65864 3.68249 3.72110 3.81936 3.95445 4.04604 4.07421 4.15968 4.19514 4.28701 4.34004 4.36100 4.44147 4.49306 4.59381 4.59574 4.62966 4.67664 4.77571 4.78464 4.81734 4.83957 4.86324 4.95644 4.95782 4.98251 5.09039 5.17643 5.19588 5.22013 5.24630 5.29494 5.36033 5.37773 5.42991 5.45637 5.50130 5.75478 6.27578 6.47665 7.00717 7.06872 7.33193 8.10543 8.32205 9.28765 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002033 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.179984 B =13771.478970 C =14614.905799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.044 4.044 5 H 0.128 0.872 6 C 0.532 3.468 7 O -0.578 6.578 8 N -0.617 5.617 9 C 0.098 3.902 10 C -0.123 4.123 11 C -0.084 4.084 12 H 0.084 0.916 13 C -0.103 4.103 14 C 0.155 3.845 15 N -0.751 5.751 16 C -0.244 4.244 17 H 0.078 0.922 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.111 3.889 25 C -0.125 4.125 26 C -0.063 4.063 27 C -0.161 4.161 28 C 0.081 3.919 29 N -0.517 5.517 30 C 0.091 3.909 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.016 0.984 46 H 0.372 0.628 47 H 0.251 0.749 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.171 0.829 51 H 0.171 0.829 52 H 0.175 0.825 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.522 0.790 -10.434 33.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.203 4.203 4 C -0.065 4.065 5 H 0.146 0.854 6 C 0.322 3.678 7 O -0.458 6.458 8 N -0.349 5.349 9 C -0.024 4.024 10 C -0.161 4.161 11 C -0.104 4.104 12 H 0.102 0.898 13 C -0.141 4.141 14 C 0.029 3.971 15 N -0.394 5.394 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.191 1.191 24 C -0.012 4.012 25 C -0.127 4.127 26 C -0.089 4.089 27 C -0.180 4.180 28 C -0.076 4.076 29 N -0.226 5.226 30 C -0.066 4.066 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.188 0.812 51 H 0.188 0.812 52 H 0.192 0.808 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -31.150 0.094 -11.579 33.232 hybrid contribution 1.385 0.339 0.841 1.656 sum -29.764 0.434 -10.738 31.645 Atomic orbital electron populations 1.21772 0.92679 1.01730 1.03207 1.20992 0.97066 0.96053 0.95487 1.21835 1.00028 0.95238 1.03190 1.20329 0.88901 0.94176 1.03136 0.85425 1.20638 0.90032 0.75059 0.82101 1.90686 1.73143 1.51749 1.30202 1.48641 1.08183 1.70696 1.07427 1.22336 0.97152 1.03212 0.79654 1.22741 0.93837 1.01413 0.98100 1.22147 0.94535 1.00557 0.93131 0.89780 1.21493 0.95825 1.01182 0.95594 1.20786 0.85958 0.96753 0.93602 1.42660 1.11835 1.70769 1.14113 1.19661 0.96523 1.29911 0.91509 0.90409 1.25626 0.96953 1.02224 1.02393 1.69823 1.06721 1.48186 1.37546 0.85113 0.77833 0.76936 0.79733 1.21529 1.22225 1.19064 1.22201 0.81156 1.00639 0.97234 1.20358 1.00316 0.95391 0.96644 1.21913 0.93253 0.96879 0.96837 1.22525 1.01016 0.94140 1.00368 1.23321 0.93493 1.01286 0.89454 1.67688 1.10168 1.16874 1.27824 1.22560 0.96832 0.89177 0.98004 0.90590 0.91796 0.93424 0.92243 0.94780 0.91626 0.90641 0.89416 0.88767 0.88383 0.90174 0.92771 0.91724 0.94950 0.96630 0.79634 0.94029 0.91525 0.92346 0.81174 0.81178 0.80798 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.89 71.98 0.64 -0.82 16 2 C -0.08 -1.18 1.98 -10.80 -0.02 -1.20 16 3 C -0.15 -2.14 9.04 71.98 0.65 -1.49 16 4 C -0.04 -0.65 1.64 -12.29 -0.02 -0.67 16 5 H 0.13 1.12 6.88 -2.38 -0.02 1.11 16 6 C 0.53 12.19 5.57 87.66 0.49 12.68 16 7 O -0.58 -18.20 15.72 -3.02 -0.05 -18.25 16 8 N -0.62 -12.78 3.33 -811.78 -2.70 -15.48 16 9 C 0.10 1.31 6.01 86.73 0.52 1.83 16 10 C -0.12 -2.10 5.59 31.78 0.18 -1.92 16 11 C -0.08 -1.92 3.07 -9.40 -0.03 -1.95 16 12 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 13 C -0.10 -3.10 4.84 30.59 0.15 -2.95 16 14 C 0.16 5.88 6.11 86.38 0.53 6.41 16 15 N -0.75 -38.19 5.60 -343.46 -1.92 -40.12 16 16 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 19 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 20 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.11 2.68 6.36 86.85 0.55 3.23 16 25 C -0.12 -1.95 3.32 -19.78 -0.07 -2.01 16 26 C -0.06 -0.62 9.81 22.47 0.22 -0.40 16 27 C -0.16 -1.56 10.11 22.36 0.23 -1.33 16 28 C 0.08 1.21 11.18 84.69 0.95 2.16 16 29 N -0.52 -11.49 10.36 -195.84 -2.03 -13.52 16 30 C 0.09 1.98 10.04 84.67 0.85 2.83 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.59 7.09 -2.38 -0.02 0.58 16 34 H 0.06 1.23 7.11 -2.39 -0.02 1.21 16 35 H 0.03 0.68 6.93 -2.38 -0.02 0.66 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.84 7.99 -2.38 -0.02 0.83 16 40 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 41 H 0.08 1.44 8.01 -2.38 -0.02 1.42 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.97 8.11 -2.38 -0.02 1.95 16 44 H 0.03 1.16 7.51 -2.38 -0.02 1.15 16 45 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.37 20.27 7.67 -92.71 -0.71 19.56 16 47 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 48 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 49 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 50 H 0.17 0.46 8.00 -2.91 -0.02 0.44 16 51 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 52 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 53 H 0.13 3.38 7.35 -2.91 -0.02 3.36 16 Total: -1.00 -76.26 422.30 2.90 -73.36 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.17 Total: 28.29 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 7.12 Total: -2.54 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -6.37 Total: -128.82 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.26 2.90 -73.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700080330.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.674 kcal (2) G-P(sol) polarization free energy of solvation -76.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds