Wall clock time and date at job start Wed Apr 1 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47513 * 2 1 4 4 N 1.46901 * 109.47619 * 180.02562 * 3 2 1 5 5 C 1.46900 * 110.99746 * 293.95784 * 4 3 2 6 6 C 1.46902 * 111.00440 * 170.00176 * 4 3 2 7 7 C 1.50702 * 109.47084 * 189.99892 * 6 4 3 8 8 O 1.21284 * 119.99935 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99528 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99612 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46940 * 180.02562 * 10 9 7 12 12 C 1.37952 * 119.70806 * 260.00438 * 11 10 9 13 13 C 1.38216 * 119.82579 * 179.97438 * 12 11 10 14 14 C 1.38004 * 119.71837 * 0.23284 * 13 12 11 15 15 C 1.38795 * 120.50245 * 359.96545 * 14 13 12 16 16 C 1.37650 * 119.86881 * 359.67903 * 15 14 13 17 17 C 1.50605 * 122.91543 * 180.71062 * 16 15 14 18 18 C 1.52791 * 110.81810 * 340.22953 * 17 16 15 19 19 N 1.47236 * 107.89792 * 47.43399 * 18 17 16 20 20 C 1.36933 * 121.34858 * 115.67337 * 19 18 17 21 21 H 1.08003 * 119.99722 * 335.43087 * 20 19 18 22 22 C 1.38811 * 120.00305 * 155.43137 * 20 19 18 23 23 N 1.31618 * 120.00003 * 344.27892 * 22 20 19 24 24 Si 1.86798 * 120.00113 * 164.27425 * 22 20 19 25 25 H 1.48495 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46853 * 120.00184 * 24 22 20 27 27 H 1.48501 * 109.47391 * 240.00128 * 24 22 20 28 28 C 1.46684 * 117.30255 * 295.64584 * 19 18 17 29 29 H 1.08994 * 109.47513 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46512 * 300.00200 * 1 2 3 31 31 H 1.08999 * 109.46996 * 59.99473 * 1 2 3 32 32 H 1.09004 * 109.47005 * 239.99972 * 2 1 3 33 33 H 1.09000 * 109.47493 * 120.00362 * 2 1 3 34 34 H 1.09002 * 109.47395 * 60.00341 * 3 2 1 35 35 H 1.08999 * 109.47420 * 300.00267 * 3 2 1 36 36 H 1.09000 * 109.47140 * 296.04084 * 5 4 3 37 37 H 1.08998 * 109.47370 * 56.04041 * 5 4 3 38 38 H 1.08999 * 109.47619 * 176.04278 * 5 4 3 39 39 H 1.09003 * 109.46730 * 70.00384 * 6 4 3 40 40 H 1.09000 * 109.46915 * 310.00172 * 6 4 3 41 41 H 0.96998 * 120.00639 * 0.02562 * 9 7 6 42 42 H 1.09007 * 109.46822 * 60.00448 * 10 9 7 43 43 H 1.08997 * 109.47167 * 300.00558 * 10 9 7 44 44 H 1.07994 * 120.08710 * 359.97438 * 12 11 10 45 45 H 1.07999 * 120.14386 * 180.25689 * 13 12 11 46 46 H 1.07998 * 119.75083 * 179.97438 * 14 13 12 47 47 H 1.08996 * 109.19711 * 219.90233 * 17 16 15 48 48 H 1.08999 * 109.20185 * 100.56653 * 17 16 15 49 49 H 1.09007 * 109.76988 * 167.03241 * 18 17 16 50 50 H 1.08994 * 109.77792 * 287.77476 * 18 17 16 51 51 H 0.96995 * 120.00160 * 179.97438 * 23 22 20 52 52 H 1.09001 * 109.43896 * 164.40962 * 28 19 18 53 53 H 1.09006 * 109.43843 * 284.28571 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0360 0.8854 1.2524 6 6 4.0355 2.7931 -0.2387 7 6 5.5217 2.7182 -0.4767 8 8 6.0869 1.6454 -0.4500 9 7 6.2228 3.8434 -0.7191 10 6 7.6678 3.7707 -0.9498 11 6 8.2077 5.1563 -1.1942 12 6 8.4526 5.5767 -2.4851 13 6 8.9473 6.8472 -2.7121 14 6 9.1975 7.6849 -1.6442 15 6 8.9554 7.2613 -0.3448 16 6 8.4558 5.9991 -0.1171 17 6 8.1533 5.4752 1.2621 18 6 8.9008 6.2796 2.3245 19 7 8.7028 7.7090 2.0323 20 6 8.0260 8.5260 2.8981 21 1 7.3035 8.1069 3.5829 22 6 8.2684 9.8928 2.8957 23 7 9.3426 10.3696 2.3031 24 14 7.0701 11.0554 3.7334 25 1 5.9520 10.2748 4.3212 26 1 7.7728 11.7998 4.8092 27 1 6.5333 12.0160 2.7362 28 6 9.2603 8.2226 0.7766 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.7453 1.5256 2.0852 37 1 3.6304 -0.1149 1.4043 38 1 5.1233 0.8320 1.1975 39 1 3.8380 3.4186 0.6318 40 1 3.5486 3.2237 -1.1137 41 1 5.7709 4.7015 -0.7401 42 1 7.8657 3.1445 -1.8199 43 1 8.1543 3.3406 -0.0744 44 1 8.2582 4.9150 -3.3161 45 1 9.1370 7.1832 -3.7208 46 1 9.5844 8.6775 -1.8210 47 1 8.4579 4.4304 1.3234 48 1 7.0814 5.5474 1.4459 49 1 8.5022 6.0463 3.3119 50 1 9.9633 6.0389 2.2896 51 1 9.5118 11.3246 2.3011 52 1 8.8173 9.1931 0.5531 53 1 10.3402 8.3320 0.8770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700122634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:33 Heat of formation + Delta-G solvation = -6.526891 kcal Electronic energy + Delta-G solvation = -30428.390373 eV Core-core repulsion = 26492.405139 eV Total energy + Delta-G solvation = -3935.985234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.28362 -40.52370 -38.34253 -37.62097 -36.01564 -34.46706 -34.07445 -33.13079 -31.77716 -30.57083 -29.31352 -27.92745 -27.43315 -26.68049 -24.81255 -24.04890 -23.75311 -21.76723 -21.62823 -21.31501 -20.60353 -18.65163 -18.19349 -17.47939 -17.02049 -16.96211 -16.55539 -16.52149 -16.32414 -15.91513 -15.72976 -15.40768 -15.39465 -14.98286 -14.77166 -14.56016 -14.15108 -14.12629 -13.96266 -13.68301 -13.63138 -13.36793 -13.26311 -12.95323 -12.81803 -12.78975 -12.74556 -12.65636 -12.51571 -12.37614 -12.32628 -12.14484 -11.94058 -11.84987 -11.61298 -11.44363 -11.33294 -10.83070 -10.68966 -10.03086 -9.55314 -9.32410 -9.28779 -8.78976 -7.91861 -5.34592 0.35782 0.56937 1.45084 1.46698 1.57094 1.69327 2.16552 2.48284 2.88764 3.10100 3.25320 3.60511 3.69550 3.88100 3.94469 3.98339 4.03156 4.14345 4.16618 4.29247 4.34304 4.35186 4.40257 4.50194 4.54677 4.55611 4.58045 4.64114 4.70640 4.74753 4.78401 4.83363 4.85001 4.90012 4.99026 5.10409 5.11916 5.15680 5.18012 5.24386 5.31035 5.38332 5.43538 5.44250 5.46578 5.58440 5.64314 5.70828 5.92902 5.95611 6.10038 6.17116 6.30556 6.60736 7.09128 7.30446 7.77863 8.33244 9.17120 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.002609 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.476893 B =10728.560222 C =12448.067104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.055 3.945 4 N -0.542 5.542 5 C 0.020 3.980 6 C 0.037 3.963 7 C 0.514 3.486 8 O -0.564 6.564 9 N -0.715 5.715 10 C 0.174 3.826 11 C -0.113 4.113 12 C -0.104 4.104 13 C -0.121 4.121 14 C -0.124 4.124 15 C -0.108 4.108 16 C -0.059 4.059 17 C -0.083 4.083 18 C 0.136 3.864 19 N -0.611 5.611 20 C -0.256 4.256 21 H 0.072 0.928 22 C -0.053 4.053 23 N -0.939 5.939 24 Si 0.969 3.031 25 H -0.265 1.265 26 H -0.293 1.293 27 H -0.290 1.290 28 C 0.221 3.779 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.409 0.591 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.021 0.979 51 H 0.251 0.749 52 H 0.062 0.938 53 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -16.108 -9.851 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.072 4.072 4 N -0.266 5.266 5 C -0.128 4.128 6 C -0.094 4.094 7 C 0.301 3.699 8 O -0.443 6.443 9 N -0.368 5.368 10 C 0.051 3.949 11 C -0.114 4.114 12 C -0.123 4.123 13 C -0.139 4.139 14 C -0.142 4.142 15 C -0.109 4.109 16 C -0.060 4.060 17 C -0.121 4.121 18 C 0.010 3.990 19 N -0.334 5.334 20 C -0.386 4.386 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.586 5.586 24 Si 0.797 3.203 25 H -0.189 1.189 26 H -0.220 1.220 27 H -0.216 1.216 28 C 0.095 3.905 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.245 0.755 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.166 0.834 45 H 0.167 0.833 46 H 0.135 0.865 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.039 0.961 51 H 0.060 0.940 52 H 0.080 0.920 53 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -12.599 -17.032 -10.177 23.503 hybrid contribution -0.259 2.145 1.363 2.555 sum -12.858 -14.887 -8.813 21.555 Atomic orbital electron populations 1.21709 0.94384 1.02261 1.02175 1.21510 0.96257 0.95741 1.02215 1.22273 0.85225 0.98153 1.01581 1.61663 1.08481 1.20302 1.36180 1.22511 1.01423 1.00086 0.88771 1.22041 0.91299 0.91704 1.04358 1.20922 0.90059 0.83343 0.75598 1.90655 1.72268 1.29612 1.51722 1.46016 1.08361 1.09972 1.72432 1.20016 0.80412 0.92715 1.01759 1.19864 1.02925 0.95378 0.93205 1.21177 0.98730 0.96341 0.96003 1.21271 0.99533 0.93946 0.99118 1.21278 1.00446 1.00428 0.92083 1.20655 0.98768 0.95581 0.95923 1.19464 0.98193 0.92808 0.95491 1.20834 1.00688 0.98827 0.91795 1.21076 0.96739 0.84079 0.97068 1.44258 1.64876 1.05304 1.18925 1.19522 1.14780 0.89191 1.15120 0.91031 1.25786 0.98336 0.99382 1.01307 1.70176 1.26345 1.12459 1.49592 0.85175 0.78802 0.78814 0.77486 1.18943 1.21999 1.21647 1.19324 0.94430 0.94064 0.82635 0.92068 0.92545 0.92132 0.91986 0.92288 0.94271 0.89660 0.95586 0.90548 0.91732 0.90562 0.85631 0.75508 0.90302 0.91490 0.83387 0.83282 0.86475 0.89912 0.91136 0.91919 0.96115 0.94023 0.92023 0.97825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.61 5.86 30.59 0.18 -1.43 16 3 C 0.05 0.79 4.96 86.30 0.43 1.22 16 4 N -0.54 -10.54 4.50 -927.05 -4.17 -14.71 16 5 C 0.02 0.41 9.01 127.69 1.15 1.56 16 6 C 0.04 0.64 5.45 85.56 0.47 1.11 16 7 C 0.51 11.94 7.55 87.66 0.66 12.60 16 8 O -0.56 -17.39 14.31 -3.04 -0.04 -17.44 16 9 N -0.72 -15.16 5.53 -466.77 -2.58 -17.75 16 10 C 0.17 4.10 5.11 85.63 0.44 4.54 16 11 C -0.11 -3.01 5.26 -19.75 -0.10 -3.11 16 12 C -0.10 -2.44 9.65 22.20 0.21 -2.22 16 13 C -0.12 -3.06 10.05 22.21 0.22 -2.84 16 14 C -0.12 -4.09 9.62 22.35 0.22 -3.87 16 15 C -0.11 -4.23 5.82 -19.83 -0.12 -4.35 16 16 C -0.06 -1.99 5.76 -19.85 -0.11 -2.11 16 17 C -0.08 -2.78 5.24 29.75 0.16 -2.63 16 18 C 0.14 5.63 6.51 86.17 0.56 6.19 16 19 N -0.61 -30.78 2.97 -704.17 -2.09 -32.87 16 20 C -0.26 -13.95 9.70 84.03 0.81 -13.14 16 21 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 22 C -0.05 -2.94 4.99 84.86 0.42 -2.52 16 23 N -0.94 -55.13 11.09 21.65 0.24 -54.89 16 24 Si 0.97 44.32 29.58 68.60 2.03 46.35 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 C 0.22 10.88 4.85 85.63 0.42 11.30 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.84 6.47 -2.39 -0.02 0.82 16 34 H 0.04 0.53 8.12 -2.39 -0.02 0.51 16 35 H 0.08 1.04 7.93 -2.39 -0.02 1.02 16 36 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 1.40 6.30 -2.39 -0.02 1.39 16 38 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 39 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 40 H 0.13 1.60 7.93 -2.39 -0.02 1.58 16 41 H 0.41 7.68 8.46 -92.71 -0.78 6.90 16 42 H 0.08 1.76 7.99 -2.38 -0.02 1.74 16 43 H 0.07 1.74 6.32 -2.39 -0.02 1.72 16 44 H 0.15 2.55 8.02 -2.91 -0.02 2.52 16 45 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 46 H 0.12 3.81 8.05 -2.91 -0.02 3.78 16 47 H 0.08 2.43 6.26 -2.39 -0.01 2.41 16 48 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.06 2.50 7.96 -2.38 -0.02 2.48 16 50 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 52 H 0.06 3.39 6.34 -2.39 -0.02 3.38 16 53 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 Total: -1.00 -68.55 414.19 0.22 -68.33 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.11 Total: 23.46 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.73 Total: -0.48 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -8.61 Total: -120.22 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.04 Total: -17.44 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.55 0.22 -68.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700122634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.803 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds