Wall clock time and date at job start Wed Apr 1 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00086 * 2 1 4 4 C 1.52996 * 109.47419 * 270.00273 * 3 2 1 5 5 C 1.53005 * 109.47337 * 59.99946 * 4 3 2 6 6 C 1.52999 * 109.47280 * 300.00061 * 4 3 2 7 7 C 1.53002 * 109.47134 * 179.97438 * 4 3 2 8 8 N 1.46504 * 109.47011 * 179.97438 * 7 4 3 9 9 C 1.36933 * 120.00040 * 180.02562 * 8 7 4 10 10 H 1.08010 * 119.99896 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00482 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99351 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00413 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46858 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46966 * 119.99894 * 13 11 9 16 16 H 1.48503 * 109.47039 * 239.99924 * 13 11 9 17 17 C 1.34777 * 119.99932 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99801 * 175.40096 * 17 2 1 19 19 C 1.50700 * 120.00025 * 355.40307 * 17 2 1 20 20 H 1.09002 * 109.25340 * 34.93381 * 19 17 2 21 21 C 1.52725 * 109.25277 * 275.46219 * 19 17 2 22 22 C 1.53307 * 108.44603 * 188.38683 * 21 19 17 23 23 C 1.52771 * 108.32398 * 69.89210 * 22 21 19 24 24 C 1.50489 * 110.56003 * 309.12325 * 23 22 21 25 25 C 1.39176 * 117.97641 * 197.27263 * 24 23 22 26 26 C 1.38410 * 118.86618 * 180.56409 * 25 24 23 27 27 C 1.38238 * 118.84448 * 359.97438 * 26 25 24 28 28 N 1.31514 * 120.60956 * 359.85436 * 27 26 25 29 29 C 1.32698 * 122.39852 * 0.04902 * 28 27 26 30 30 H 1.09004 * 109.46833 * 95.43658 * 1 2 3 31 31 H 1.08994 * 109.46933 * 215.43342 * 1 2 3 32 32 H 1.09003 * 109.46730 * 335.43769 * 1 2 3 33 33 H 1.09000 * 109.47315 * 149.99820 * 3 2 1 34 34 H 1.09007 * 109.47193 * 30.00361 * 3 2 1 35 35 H 1.09007 * 109.46872 * 300.00340 * 5 4 3 36 36 H 1.09001 * 109.46869 * 59.99717 * 5 4 3 37 37 H 1.08993 * 109.47451 * 180.02562 * 5 4 3 38 38 H 1.08991 * 109.47585 * 180.02562 * 6 4 3 39 39 H 1.09001 * 109.46825 * 300.00333 * 6 4 3 40 40 H 1.08994 * 109.47029 * 59.99424 * 6 4 3 41 41 H 1.08996 * 109.46943 * 299.99571 * 7 4 3 42 42 H 1.09001 * 109.46883 * 60.00305 * 7 4 3 43 43 H 0.97000 * 120.00319 * 359.97438 * 8 7 4 44 44 H 0.97006 * 119.99788 * 179.97438 * 12 11 9 45 45 H 1.08993 * 109.63947 * 308.11409 * 21 19 17 46 46 H 1.09005 * 109.63833 * 68.74043 * 21 19 17 47 47 H 1.08994 * 109.71478 * 310.17666 * 22 21 19 48 48 H 1.09003 * 109.72423 * 189.60844 * 22 21 19 49 49 H 1.09002 * 109.25358 * 188.84871 * 23 22 21 50 50 H 1.09003 * 109.23088 * 69.39248 * 23 22 21 51 51 H 1.08006 * 120.56737 * 0.54934 * 25 24 23 52 52 H 1.08008 * 120.57777 * 180.02562 * 26 25 24 53 53 H 1.07999 * 119.69203 * 179.87814 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 1.1156 1.8935 -2.1637 6 6 3.2794 0.6442 -2.1638 7 6 3.2170 3.0358 -1.4424 8 7 3.4617 3.4585 -2.8236 9 6 4.1349 4.6244 -3.0738 10 1 4.4859 5.2321 -2.2528 11 6 4.3673 5.0247 -4.3825 12 7 3.9400 4.2838 -5.3829 13 14 5.2863 6.6147 -4.7237 14 1 5.6564 7.2583 -3.4376 15 1 6.5162 6.3184 -5.5016 16 1 4.4164 7.5317 -5.5033 17 6 2.1389 -1.1672 -0.0005 18 8 3.3488 -1.1688 -0.0847 19 6 1.3890 -2.4703 0.1035 20 1 0.4399 -2.3819 -0.4251 21 6 1.1194 -2.7801 1.5745 22 6 0.5481 -4.1992 1.6745 23 6 1.6609 -5.1899 1.3365 24 6 2.3249 -4.8163 0.0387 25 6 3.0924 -5.7832 -0.6039 26 6 3.7210 -5.4558 -1.7928 27 6 3.5641 -4.1797 -2.3008 28 7 2.8281 -3.2927 -1.6675 29 6 2.2078 -3.5674 -0.5270 30 1 -0.3633 -0.0974 -1.0231 31 1 -0.3633 -0.8373 0.5958 32 1 -0.3633 0.9347 0.4272 33 1 3.1500 1.1384 0.5139 34 1 1.6085 2.0284 0.5139 35 1 0.5706 0.9495 -2.1637 36 1 0.5266 2.6531 -1.6498 37 1 1.2973 2.2078 -3.1914 38 1 3.4614 0.9591 -3.1912 39 1 4.2318 0.5138 -1.6499 40 1 2.7344 -0.2997 -2.1638 41 1 2.6275 3.7952 -0.9287 42 1 4.1694 2.9058 -0.9285 43 1 3.1475 2.9122 -3.5609 44 1 4.1020 4.5636 -6.2974 45 1 2.0501 -2.7186 2.1384 46 1 0.3982 -2.0665 1.9729 47 1 -0.2738 -4.3153 0.9682 48 1 0.1899 -4.3810 2.6878 49 1 1.2371 -6.1903 1.2487 50 1 2.4028 -5.1826 2.1352 51 1 3.1960 -6.7720 -0.1821 52 1 4.3230 -6.1848 -2.3150 53 1 4.0500 -3.9089 -3.2265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700444654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:03 Heat of formation + Delta-G solvation = -16.128354 kcal Electronic energy + Delta-G solvation = -31730.168626 eV Core-core repulsion = 27793.767041 eV Total energy + Delta-G solvation = -3936.401585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.05287 -40.75985 -38.71009 -37.32925 -36.35692 -34.91732 -34.14880 -32.24692 -31.39519 -30.91370 -28.80505 -28.11519 -27.31566 -26.83285 -25.39920 -24.55520 -24.16429 -23.55648 -20.95835 -20.32317 -19.75570 -19.11470 -18.18226 -17.75327 -17.44482 -16.90348 -16.74875 -16.35221 -16.22562 -15.62140 -15.43907 -15.23230 -15.03167 -14.77690 -14.69057 -14.38784 -14.21951 -14.16244 -13.77919 -13.76137 -13.70227 -13.60612 -13.35308 -13.10996 -12.95337 -12.87197 -12.74895 -12.47938 -12.41163 -12.23081 -12.18108 -12.06916 -11.80615 -11.66162 -11.61318 -11.48720 -11.42549 -10.95558 -10.67070 -10.51703 -10.19314 -9.68231 -9.48827 -8.98254 -7.94914 -5.23169 0.17510 0.40595 1.44457 1.46480 1.56524 1.76246 2.11558 2.55682 2.86285 3.20982 3.37923 3.60716 3.66908 3.85372 3.88171 3.93519 3.96671 3.99550 4.08382 4.15849 4.21721 4.27610 4.33272 4.38471 4.46016 4.50396 4.58038 4.62706 4.70228 4.72039 4.78018 4.81140 4.87533 4.90425 4.90888 4.92672 4.95965 5.04477 5.11893 5.17234 5.17627 5.20830 5.27665 5.29883 5.38907 5.41898 5.45940 5.48604 5.55325 5.67285 5.83410 6.27255 6.52438 7.15473 7.33158 7.35903 8.10642 8.34746 9.29264 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017449 B = 0.002607 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.336382 B =10737.342210 C =11804.257095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.609 5.609 3 C 0.140 3.860 4 C -0.077 4.077 5 C -0.123 4.123 6 C -0.098 4.098 7 C 0.164 3.836 8 N -0.740 5.740 9 C -0.242 4.242 10 H 0.075 0.925 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.976 3.024 14 H -0.266 1.266 15 H -0.295 1.295 16 H -0.290 1.290 17 C 0.522 3.478 18 O -0.564 6.564 19 C -0.050 4.050 20 H 0.120 0.880 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.078 4.078 24 C -0.127 4.127 25 C -0.085 4.085 26 C -0.170 4.170 27 C 0.072 3.928 28 N -0.505 5.505 29 C 0.120 3.880 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.018 0.982 39 H 0.026 0.974 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.005 0.995 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.167 0.833 52 H 0.160 0.840 53 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.395 -24.531 18.761 33.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.341 5.341 3 C 0.016 3.984 4 C -0.078 4.078 5 C -0.180 4.180 6 C -0.156 4.156 7 C 0.037 3.963 8 N -0.383 5.383 9 C -0.374 4.374 10 H 0.093 0.907 11 C -0.271 4.271 12 N -0.623 5.623 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.223 1.223 16 H -0.217 1.217 17 C 0.311 3.689 18 O -0.441 6.441 19 C -0.072 4.072 20 H 0.138 0.862 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.111 4.111 26 C -0.190 4.190 27 C -0.087 4.087 28 N -0.214 5.214 29 C -0.016 4.016 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.023 0.977 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.096 0.904 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.102 0.898 51 H 0.184 0.816 52 H 0.178 0.822 53 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.776 -23.531 18.445 32.514 hybrid contribution 1.303 0.195 -1.251 1.817 sum -11.473 -23.336 17.194 31.175 Atomic orbital electron populations 1.22263 0.77295 1.05416 1.02711 1.47799 1.08206 1.04825 1.73318 1.21329 0.97455 0.85367 0.94260 1.21036 0.95991 0.94039 0.96776 1.21755 0.95416 1.01584 0.99250 1.21463 0.98604 0.97673 0.97849 1.20731 0.95743 0.93590 0.86200 1.42610 1.67852 1.25063 1.02780 1.19704 1.26897 0.98760 0.92053 0.90738 1.25601 1.03446 1.02622 0.95463 1.69851 1.53469 1.40748 0.98196 0.85028 0.77462 0.79165 0.77837 1.18991 1.22272 1.21698 1.20646 0.87593 0.85621 0.75075 1.90706 1.16355 1.87495 1.49576 1.20248 0.98414 0.88782 0.99781 0.86243 1.21595 1.02280 0.99854 0.90585 1.21588 0.97405 0.91888 1.04062 1.20558 0.97963 1.01008 0.91965 1.20802 0.99544 0.93437 0.99104 1.21979 0.94339 1.00505 0.94285 1.22404 1.01130 0.97776 0.97674 1.22879 0.95695 0.90549 0.99535 1.67436 1.07921 1.36561 1.09442 1.20743 0.95951 0.93382 0.91489 0.92426 0.88582 0.88644 0.92177 0.87607 0.91279 0.91464 0.95467 0.96274 0.95475 0.92807 0.95087 0.97715 0.79207 0.94089 0.92451 0.87864 0.90356 0.87991 0.88110 0.89842 0.81600 0.82248 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 8.67 127.77 1.11 2.01 16 2 N -0.61 -14.50 2.40 -846.74 -2.03 -16.53 16 3 C 0.14 3.98 4.62 86.38 0.40 4.38 16 4 C -0.08 -2.80 0.60 -52.18 -0.03 -2.84 16 5 C -0.12 -4.11 7.71 71.98 0.55 -3.55 16 6 C -0.10 -4.24 6.90 71.98 0.50 -3.74 16 7 C 0.16 7.25 5.15 86.38 0.44 7.70 16 8 N -0.74 -40.70 5.00 -343.44 -1.72 -42.42 16 9 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 10 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 11 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 12 N -0.97 -62.72 13.06 21.65 0.28 -62.44 16 13 Si 0.98 48.48 29.55 68.60 2.03 50.51 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 C 0.52 14.76 4.97 87.66 0.44 15.20 16 18 O -0.56 -21.75 13.06 -3.04 -0.04 -21.79 16 19 C -0.05 -1.03 1.86 -12.37 -0.02 -1.05 16 20 H 0.12 2.00 6.80 -2.39 -0.02 1.99 16 21 C -0.11 -1.34 5.09 30.61 0.16 -1.18 16 22 C -0.11 -0.85 5.99 30.62 0.18 -0.67 16 23 C -0.08 -0.78 5.68 29.71 0.17 -0.61 16 24 C -0.13 -2.34 5.74 -19.85 -0.11 -2.45 16 25 C -0.09 -1.38 9.75 22.54 0.22 -1.17 16 26 C -0.17 -3.23 10.12 22.31 0.23 -3.00 16 27 C 0.07 1.92 11.19 84.74 0.95 2.87 16 28 N -0.51 -15.79 8.91 -184.00 -1.64 -17.43 16 29 C 0.12 3.01 5.82 42.29 0.25 3.26 16 30 H 0.06 0.86 6.53 -2.39 -0.02 0.85 16 31 H 0.10 0.77 5.42 -2.39 -0.01 0.76 16 32 H 0.09 1.00 7.83 -2.39 -0.02 0.99 16 33 H 0.06 1.98 7.49 -2.39 -0.02 1.96 16 34 H 0.11 2.35 7.86 -2.38 -0.02 2.33 16 35 H 0.07 1.97 5.44 -2.38 -0.01 1.96 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 38 H 0.02 0.91 6.86 -2.39 -0.02 0.89 16 39 H 0.03 1.26 7.64 -2.39 -0.02 1.24 16 40 H 0.05 2.24 6.07 -2.39 -0.01 2.23 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.37 22.05 5.36 -92.71 -0.50 21.55 16 44 H 0.25 15.56 8.31 -92.70 -0.77 14.79 16 45 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 46 H 0.10 0.81 6.91 -2.38 -0.02 0.79 16 47 H 0.08 0.51 8.10 -2.39 -0.02 0.49 16 48 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.10 0.56 8.13 -2.39 -0.02 0.54 16 50 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 52 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 53 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -84.81 401.05 4.02 -80.79 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.41 Total: 32.07 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.73 Total: -2.76 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -5.11 Total: -138.81 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.04 Total: -21.79 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -84.81 4.02 -80.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700444654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.663 kcal (2) G-P(sol) polarization free energy of solvation -84.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds