Wall clock time and date at job start Wed Apr 1 2020 03:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47006 * 2 1 4 4 C 1.53002 * 109.46967 * 239.99898 * 2 1 3 5 5 H 1.09002 * 109.47230 * 304.99975 * 4 2 1 6 6 C 1.52997 * 109.47105 * 185.00051 * 4 2 1 7 7 C 1.53001 * 109.47264 * 175.00179 * 6 4 2 8 8 N 1.46497 * 109.47224 * 179.97438 * 7 6 4 9 9 C 1.46505 * 120.00012 * 269.99987 * 8 7 6 10 10 C 1.34777 * 120.00193 * 89.99780 * 8 7 6 11 11 O 1.21281 * 119.99773 * 355.05724 * 10 8 7 12 12 C 1.50701 * 119.99889 * 175.05570 * 10 8 7 13 13 H 1.08992 * 110.73375 * 31.53082 * 12 10 8 14 14 C 1.54371 * 110.81990 * 154.93523 * 12 10 8 15 15 C 1.51229 * 105.11972 * 144.51367 * 14 12 10 16 16 C 1.38742 * 130.69038 * 162.86180 * 15 14 12 17 17 C 1.38576 * 118.55235 * 180.02562 * 16 15 14 18 18 C 1.38226 * 118.99138 * 0.02562 * 17 16 15 19 19 N 1.31681 * 120.80311 * 359.97438 * 18 17 16 20 20 C 1.32303 * 122.03290 * 359.97438 * 19 18 17 21 21 C 1.51476 * 130.14362 * 180.02562 * 20 19 18 22 22 N 1.46508 * 109.47135 * 65.00177 * 4 2 1 23 23 C 1.36936 * 119.99811 * 274.99696 * 22 4 2 24 24 H 1.08003 * 119.99893 * 0.02562 * 23 22 4 25 25 C 1.38815 * 119.99819 * 179.97438 * 23 22 4 26 26 N 1.31620 * 119.99647 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00065 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47078 * 89.99617 * 27 25 23 29 29 H 1.48498 * 109.47123 * 209.99874 * 27 25 23 30 30 H 1.48500 * 109.46923 * 329.99706 * 27 25 23 31 31 H 1.08998 * 109.47513 * 300.00014 * 1 2 3 32 32 H 1.09007 * 109.47464 * 60.00119 * 1 2 3 33 33 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47155 * 120.00150 * 2 1 3 35 35 H 1.08995 * 109.47208 * 60.00146 * 3 2 1 36 36 H 1.09000 * 109.46765 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47138 * 299.99768 * 3 2 1 38 38 H 1.09004 * 109.47229 * 294.99793 * 6 4 2 39 39 H 1.08997 * 109.47286 * 54.99906 * 6 4 2 40 40 H 1.09000 * 109.47379 * 299.99775 * 7 6 4 41 41 H 1.09001 * 109.46827 * 59.99987 * 7 6 4 42 42 H 1.09000 * 109.47252 * 95.22449 * 9 8 7 43 43 H 1.09000 * 109.47276 * 215.22460 * 9 8 7 44 44 H 1.09001 * 109.47093 * 335.22225 * 9 8 7 45 45 H 1.08995 * 110.31310 * 263.42682 * 14 12 10 46 46 H 1.08997 * 110.31306 * 25.50786 * 14 12 10 47 47 H 1.07999 * 120.72094 * 0.03690 * 16 15 14 48 48 H 1.08001 * 120.50161 * 180.02562 * 17 16 15 49 49 H 1.08006 * 119.59679 * 180.02562 * 18 17 16 50 50 H 1.09004 * 110.29400 * 78.25490 * 21 20 19 51 51 H 1.09002 * 110.29389 * 316.12360 * 21 20 19 52 52 H 0.96993 * 119.99930 * 94.99453 * 22 4 2 53 53 H 0.97003 * 119.99525 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6053 -1.7199 -1.2952 6 6 3.5647 -0.8311 -1.1880 7 6 4.0644 -1.6600 -2.3730 8 7 5.5245 -1.7647 -2.3147 9 6 6.3580 -0.7607 -2.9808 10 6 6.1010 -2.7845 -1.6482 11 8 5.4150 -3.5644 -1.0221 12 6 7.5979 -2.9556 -1.6811 13 1 8.0950 -1.9891 -1.7638 14 6 8.0902 -3.7209 -0.4341 15 6 9.2421 -4.5705 -0.9220 16 6 10.2534 -5.2118 -0.2213 17 6 11.1965 -5.9357 -0.9333 18 6 11.0971 -5.9927 -2.3108 19 7 10.1232 -5.3713 -2.9429 20 6 9.2034 -4.6712 -2.2994 21 6 8.0177 -3.8936 -2.8325 22 7 1.6524 0.0354 -2.4425 23 6 0.4156 -0.1514 -2.9998 24 1 -0.2743 -0.8561 -2.5595 25 6 0.0482 0.5660 -4.1300 26 7 -1.1405 0.3861 -4.6659 27 14 1.2411 1.7853 -4.8911 28 1 2.0762 1.0934 -5.9055 29 1 0.4802 2.8824 -5.5411 30 1 2.1154 2.3495 -3.8315 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8899 36 1 3.1299 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 4.0029 0.1660 -1.2317 39 1 3.8570 -1.3159 -0.2565 40 1 3.6263 -2.6572 -2.3293 41 1 3.7722 -1.1752 -3.3044 42 1 6.6478 0.0058 -2.2620 43 1 7.2515 -1.2387 -3.3823 44 1 5.7948 -0.3023 -3.7936 45 1 8.4324 -3.0213 0.3285 46 1 7.2940 -4.3515 -0.0384 47 1 10.3045 -5.1483 0.8556 48 1 11.9969 -6.4475 -0.4198 49 1 11.8265 -6.5544 -2.8755 50 1 7.2029 -4.5724 -3.0846 51 1 8.3096 -3.3110 -3.7063 52 1 2.2718 0.6685 -2.8376 53 1 -1.3973 0.8876 -5.4555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700506061.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:50 Heat of formation + Delta-G solvation = -13.862184 kcal Electronic energy + Delta-G solvation = -30596.361416 eV Core-core repulsion = 26660.058100 eV Total energy + Delta-G solvation = -3936.303316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.01375 -40.76699 -39.12648 -37.06708 -36.60570 -34.74719 -33.62513 -33.08082 -31.96816 -30.48305 -28.88347 -28.14279 -27.75135 -27.02451 -25.20856 -24.39221 -22.97093 -22.83273 -22.01518 -20.52879 -19.89782 -19.45242 -18.48969 -17.68206 -17.31074 -17.06205 -16.67080 -16.48007 -15.99690 -15.78163 -15.69912 -15.38132 -15.00460 -14.72079 -14.55540 -14.43827 -14.25219 -14.09712 -14.05651 -13.83928 -13.79527 -13.51789 -13.28600 -12.98822 -12.92669 -12.87913 -12.76850 -12.65541 -12.37281 -12.35908 -12.29206 -12.12710 -11.88763 -11.86352 -11.73342 -11.30197 -11.21984 -10.88198 -10.79589 -10.68367 -10.28870 -9.69035 -9.67346 -9.16667 -7.90712 -5.21476 0.11849 0.32706 1.40732 1.44989 1.49844 1.52426 1.97398 2.56730 2.78939 2.97073 3.27653 3.40177 3.63801 3.66111 3.69152 3.91815 3.96434 4.06584 4.07116 4.18274 4.19537 4.23843 4.35424 4.36350 4.39141 4.46902 4.57710 4.63461 4.64854 4.69466 4.72180 4.76414 4.79672 4.88809 4.91111 4.95737 4.99862 5.01546 5.02549 5.10213 5.18890 5.22082 5.27275 5.27981 5.37245 5.41068 5.56146 5.60708 5.77060 5.77300 5.92487 6.31997 6.40515 7.01627 7.13463 7.19587 7.94599 8.16138 9.31229 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.002303 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.950034 B =12156.483252 C =13026.057586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.131 4.131 4 C 0.184 3.816 5 H 0.033 0.967 6 C -0.119 4.119 7 C 0.123 3.877 8 N -0.610 5.610 9 C 0.064 3.936 10 C 0.520 3.480 11 O -0.576 6.576 12 C -0.098 4.098 13 H 0.136 0.864 14 C -0.064 4.064 15 C -0.153 4.153 16 C -0.069 4.069 17 C -0.166 4.166 18 C 0.087 3.913 19 N -0.510 5.510 20 C 0.097 3.903 21 C -0.052 4.052 22 N -0.738 5.738 23 C -0.200 4.200 24 H 0.056 0.944 25 C -0.072 4.072 26 N -0.990 5.990 27 Si 0.947 3.053 28 H -0.280 1.280 29 H -0.308 1.308 30 H -0.246 1.246 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.158 0.842 48 H 0.170 0.830 49 H 0.181 0.819 50 H 0.075 0.925 51 H 0.107 0.893 52 H 0.365 0.635 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.951 -5.576 10.106 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.189 4.189 4 C 0.075 3.925 5 H 0.051 0.949 6 C -0.158 4.158 7 C 0.001 3.999 8 N -0.341 5.341 9 C -0.077 4.077 10 C 0.308 3.692 11 O -0.456 6.456 12 C -0.119 4.119 13 H 0.154 0.846 14 C -0.102 4.102 15 C -0.155 4.155 16 C -0.095 4.095 17 C -0.185 4.185 18 C -0.070 4.070 19 N -0.220 5.220 20 C -0.040 4.040 21 C -0.090 4.090 22 N -0.381 5.381 23 C -0.331 4.331 24 H 0.074 0.926 25 C -0.262 4.262 26 N -0.642 5.642 27 Si 0.775 3.225 28 H -0.206 1.206 29 H -0.236 1.236 30 H -0.170 1.170 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.175 0.825 48 H 0.188 0.812 49 H 0.198 0.802 50 H 0.093 0.907 51 H 0.125 0.875 52 H 0.199 0.801 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 29.365 -6.115 9.477 31.457 hybrid contribution -0.414 0.577 -0.117 0.720 sum 28.951 -5.538 9.360 30.927 Atomic orbital electron populations 1.21778 0.96564 1.00178 1.01096 1.21601 0.95320 0.97446 0.98272 1.21671 1.00665 0.95630 1.00894 1.20340 0.92732 0.93416 0.86012 0.94897 1.22008 0.94790 1.00582 0.98428 1.21369 0.78959 1.00264 0.99355 1.48003 1.06894 1.26549 1.52629 1.22181 0.95792 0.91525 0.98248 1.20719 0.90671 0.79867 0.77926 1.90690 1.65795 1.45423 1.43682 1.21984 0.91054 1.02086 0.96801 0.84607 1.20871 0.94703 0.97644 0.96935 1.21566 0.97779 1.00497 0.95658 1.21475 0.92111 0.94009 1.01915 1.22461 1.00703 1.00019 0.95364 1.23172 0.94895 0.95740 0.93148 1.66822 1.03518 1.08552 1.43086 1.21839 0.94685 0.95644 0.91842 1.20765 0.93539 0.96598 0.98127 1.42681 1.15002 1.49088 1.31325 1.18935 0.91546 1.17096 1.05529 0.92553 1.25414 0.98317 1.02889 0.99571 1.69895 1.22114 1.47196 1.25044 0.85518 0.79011 0.78953 0.78990 1.20611 1.23567 1.17001 0.92978 0.93302 0.94893 0.91026 0.92801 0.91840 0.94197 0.90343 0.91300 0.92651 0.90258 0.90386 0.88831 0.90337 0.87866 0.89956 0.82460 0.81205 0.80220 0.90699 0.87505 0.80117 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.46 71.98 0.61 -4.60 16 2 C -0.11 -3.47 2.74 -10.79 -0.03 -3.50 16 3 C -0.13 -3.91 8.74 71.98 0.63 -3.28 16 4 C 0.18 6.61 2.13 44.99 0.10 6.70 16 5 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 6 C -0.12 -3.41 4.71 30.59 0.14 -3.26 16 7 C 0.12 3.60 5.30 86.38 0.46 4.06 16 8 N -0.61 -13.69 2.87 -846.74 -2.43 -16.13 16 9 C 0.06 0.89 9.88 127.77 1.26 2.16 16 10 C 0.52 12.54 6.74 87.66 0.59 13.13 16 11 O -0.58 -19.02 15.31 -3.03 -0.05 -19.07 16 12 C -0.10 -1.62 2.51 -10.62 -0.03 -1.65 16 13 H 0.14 1.41 6.69 -2.39 -0.02 1.40 16 14 C -0.06 -1.08 6.26 30.48 0.19 -0.88 16 15 C -0.15 -2.67 6.16 -19.59 -0.12 -2.79 16 16 C -0.07 -0.91 10.17 22.47 0.23 -0.68 16 17 C -0.17 -1.85 10.12 22.35 0.23 -1.62 16 18 C 0.09 1.30 11.18 84.71 0.95 2.25 16 19 N -0.51 -10.86 10.35 -182.98 -1.89 -12.75 16 20 C 0.10 1.97 7.32 42.72 0.31 2.29 16 21 C -0.05 -0.95 6.20 30.55 0.19 -0.76 16 22 N -0.74 -31.31 3.34 -322.92 -1.08 -32.39 16 23 C -0.20 -10.73 8.24 84.03 0.69 -10.03 16 24 H 0.06 3.40 7.55 -2.91 -0.02 3.38 16 25 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 26 N -0.99 -62.97 13.97 21.65 0.30 -62.67 16 27 Si 0.95 43.74 27.74 68.60 1.90 45.64 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 29 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 30 H -0.25 -9.92 6.52 99.48 0.65 -9.27 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 2.22 5.99 -2.38 -0.01 2.20 16 33 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.60 6.68 -2.39 -0.02 1.58 16 37 H 0.04 1.39 7.47 -2.39 -0.02 1.37 16 38 H 0.08 2.00 6.81 -2.38 -0.02 1.98 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.91 7.50 -2.39 -0.02 1.90 16 41 H 0.08 2.43 7.47 -2.39 -0.02 2.41 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.86 6.39 -2.39 -0.02 0.84 16 44 H 0.08 1.15 7.83 -2.39 -0.02 1.13 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.81 6.90 -2.39 -0.02 1.79 16 47 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 48 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 49 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.07 1.67 7.89 -2.39 -0.02 1.65 16 51 H 0.11 1.56 7.97 -2.39 -0.02 1.54 16 52 H 0.37 14.72 5.66 -92.71 -0.52 14.20 16 53 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.57 413.00 3.93 -71.64 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.31 Total: 31.84 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 6.86 Total: -6.11 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -5.10 Total: -123.94 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Total: -75.57 3.93 -71.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700506061.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.777 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds