Wall clock time and date at job start Wed Apr 1 2020 04:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46929 * 2 1 4 4 H 1.09000 * 109.87814 * 55.75284 * 3 2 1 5 5 C 1.54327 * 109.88518 * 294.73496 * 3 2 1 6 6 H 1.09001 * 110.71308 * 336.77702 * 5 3 2 7 7 N 1.46493 * 110.71797 * 99.87085 * 5 3 2 8 8 C 1.34779 * 119.99543 * 204.99928 * 7 5 3 9 9 O 1.21280 * 120.00420 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99692 * 180.02562 * 8 7 5 11 11 N 1.46906 * 109.47263 * 179.97438 * 10 8 7 12 12 C 1.46895 * 110.99416 * 66.04765 * 11 10 8 13 13 C 1.46901 * 111.00151 * 189.99855 * 11 10 8 14 14 C 1.50698 * 109.46887 * 169.99877 * 13 11 10 15 15 C 1.38231 * 120.00329 * 269.73188 * 14 13 11 16 16 C 1.38242 * 119.99924 * 179.76912 * 15 14 13 17 17 C 1.38236 * 119.99847 * 0.48355 * 16 15 14 18 18 C 1.38239 * 119.99962 * 359.78587 * 17 16 15 19 19 C 1.38232 * 120.00044 * 359.96248 * 18 17 16 20 20 C 1.55155 * 102.94367 * 218.23795 * 5 3 2 21 21 C 1.54912 * 101.58315 * 35.49917 * 20 5 3 22 22 N 1.47032 * 109.88267 * 176.76626 * 3 2 1 23 23 C 1.36929 * 125.64534 * 298.48088 * 22 3 2 24 24 H 1.07999 * 120.00674 * 346.22175 * 23 22 3 25 25 C 1.38819 * 119.99994 * 166.23113 * 23 22 3 26 26 N 1.31620 * 119.99515 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00049 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47465 * 59.99818 * 27 25 23 29 29 H 1.48501 * 109.46916 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47487 * 299.99485 * 27 25 23 31 31 H 1.08997 * 109.46935 * 305.58278 * 1 2 3 32 32 H 1.08991 * 109.47429 * 65.58362 * 1 2 3 33 33 H 1.09004 * 109.46764 * 185.58508 * 1 2 3 34 34 H 1.09001 * 109.46694 * 240.00179 * 2 1 3 35 35 H 1.09004 * 109.47213 * 120.00288 * 2 1 3 36 36 H 0.96994 * 120.00532 * 25.00304 * 7 5 3 37 37 H 1.09001 * 109.47459 * 300.00275 * 10 8 7 38 38 H 1.09003 * 109.47402 * 60.00258 * 10 8 7 39 39 H 1.09005 * 109.47565 * 60.00150 * 12 11 10 40 40 H 1.09006 * 109.47002 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.47587 * 300.00167 * 12 11 10 42 42 H 1.08993 * 109.47440 * 290.00252 * 13 11 10 43 43 H 1.09000 * 109.46992 * 50.00300 * 13 11 10 44 44 H 1.07994 * 119.99943 * 359.97438 * 15 14 13 45 45 H 1.07999 * 119.99536 * 180.24978 * 16 15 14 46 46 H 1.07998 * 119.99952 * 179.77027 * 17 16 15 47 47 H 1.07994 * 119.99682 * 179.97438 * 18 17 16 48 48 H 1.08002 * 119.99917 * 179.97438 * 19 18 17 49 49 H 1.08997 * 111.00510 * 153.57597 * 20 5 3 50 50 H 1.08993 * 111.00192 * 277.39053 * 20 5 3 51 51 H 1.09006 * 110.36944 * 81.82875 * 21 20 5 52 52 H 1.08998 * 110.36934 * 204.04593 * 21 20 5 53 53 H 0.96999 * 119.99817 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6196 1.9842 0.8473 5 6 1.6424 2.1398 -1.3181 6 1 1.4680 1.4060 -2.1051 7 7 0.4581 2.9797 -1.1233 8 6 -0.3445 3.2654 -2.1677 9 8 -0.0865 2.8268 -3.2686 10 6 -1.5625 4.1299 -1.9675 11 7 -2.2641 4.2917 -3.2481 12 6 -2.8163 3.0117 -3.7110 13 6 -3.3153 5.3129 -3.1471 14 6 -3.8439 5.6272 -4.5229 15 6 -3.2660 6.6352 -5.2718 16 6 -3.7479 6.9203 -6.5357 17 6 -4.8142 6.2041 -7.0467 18 6 -5.3957 5.1998 -6.2955 19 6 -4.9104 4.9112 -5.0337 20 6 2.8859 3.0102 -1.6396 21 6 4.0379 2.1039 -1.1383 22 7 3.5082 1.4538 0.0780 23 6 4.2565 0.9478 1.1070 24 1 3.7846 0.6967 2.0454 25 6 5.6220 0.7578 0.9442 26 7 6.1971 1.0636 -0.1996 27 14 6.6430 0.0683 2.3482 28 1 6.1348 -1.2779 2.7153 29 1 8.0618 -0.0379 1.9227 30 1 6.5442 0.9718 3.5224 31 1 -0.3633 0.5980 0.8358 32 1 -0.3634 0.4248 -0.9357 33 1 -0.3633 -1.0228 0.1000 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.2515 3.3302 -0.2429 37 1 -2.2284 3.6579 -1.2451 38 1 -1.2569 5.1077 -1.5951 39 1 -3.5214 2.6315 -2.9718 40 1 -3.3299 3.1599 -4.6610 41 1 -2.0071 2.2937 -3.8441 42 1 -4.1266 4.9387 -2.5229 43 1 -2.9015 6.2175 -2.7015 44 1 -2.4359 7.1977 -4.8708 45 1 -3.2938 7.7052 -7.1224 46 1 -5.1931 6.4293 -8.0326 47 1 -6.2289 4.6406 -6.6946 48 1 -5.3650 4.1269 -4.4467 49 1 2.9695 3.1914 -2.7112 50 1 2.8586 3.9495 -1.0875 51 1 4.2857 1.3544 -1.8900 52 1 4.9157 2.7040 -0.8982 53 1 7.1511 0.9305 -0.3135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707204616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:04 Heat of formation + Delta-G solvation = 2.534440 kcal Electronic energy + Delta-G solvation = -30415.252463 eV Core-core repulsion = 26479.660157 eV Total energy + Delta-G solvation = -3935.592305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.14557 -40.26970 -39.34032 -37.47837 -35.53379 -34.26247 -33.49688 -32.63982 -31.75342 -30.95116 -29.25697 -28.07972 -27.66846 -26.24395 -24.22349 -23.44607 -23.30517 -22.17662 -21.68868 -21.50284 -20.86510 -18.75045 -18.14661 -17.52357 -17.31365 -16.80882 -16.74805 -16.35661 -16.10688 -15.80351 -15.71001 -15.36522 -15.33049 -15.07810 -14.72345 -14.34901 -14.22558 -13.92336 -13.79486 -13.62620 -13.53318 -13.37171 -13.24256 -12.91693 -12.85196 -12.68543 -12.64463 -12.57250 -12.47803 -12.20942 -12.05679 -11.98588 -11.88858 -11.82850 -11.77731 -11.54580 -11.34142 -10.72452 -10.63162 -9.89909 -9.74258 -9.67294 -9.19167 -8.82510 -7.84198 -5.22001 0.46301 0.56670 1.47128 1.50035 1.56151 1.76926 2.11050 2.51910 2.84138 3.28176 3.35556 3.58128 3.85996 3.87077 3.90985 3.94975 4.00925 4.21464 4.22251 4.29466 4.35318 4.37516 4.38148 4.43035 4.45030 4.53472 4.62348 4.63415 4.67465 4.68209 4.76916 4.78974 4.84632 4.89892 5.04402 5.14826 5.17123 5.18825 5.20688 5.21899 5.34490 5.47233 5.51361 5.58852 5.60668 5.67977 5.71702 5.72814 5.74374 5.96931 6.08646 6.19026 6.23988 6.72462 7.09298 7.42474 7.77596 8.45422 9.26916 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.001947 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.343097 B =14375.532018 C =14911.511707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.054 0.946 5 C 0.161 3.839 6 H 0.073 0.927 7 N -0.704 5.704 8 C 0.512 3.488 9 O -0.568 6.568 10 C 0.043 3.957 11 N -0.539 5.539 12 C 0.023 3.977 13 C 0.097 3.903 14 C -0.089 4.089 15 C -0.114 4.114 16 C -0.134 4.134 17 C -0.131 4.131 18 C -0.132 4.132 19 C -0.122 4.122 20 C -0.140 4.140 21 C 0.181 3.819 22 N -0.613 5.613 23 C -0.230 4.230 24 H 0.083 0.917 25 C -0.066 4.066 26 N -0.951 5.951 27 Si 0.976 3.024 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.274 1.274 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.413 0.587 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.129 0.871 49 H 0.062 0.938 50 H 0.075 0.925 51 H -0.010 1.010 52 H 0.041 0.959 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.447 11.088 -5.499 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.072 0.928 5 C 0.055 3.945 6 H 0.091 0.909 7 N -0.357 5.357 8 C 0.299 3.701 9 O -0.446 6.446 10 C -0.088 4.088 11 N -0.263 5.263 12 C -0.125 4.125 13 C -0.030 4.030 14 C -0.090 4.090 15 C -0.132 4.132 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.180 4.180 21 C 0.055 3.945 22 N -0.338 5.338 23 C -0.359 4.359 24 H 0.101 0.899 25 C -0.259 4.259 26 N -0.599 5.599 27 Si 0.804 3.196 28 H -0.204 1.204 29 H -0.225 1.225 30 H -0.200 1.200 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.250 0.750 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.144 0.856 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.147 0.853 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.008 0.992 52 H 0.060 0.940 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.712 10.888 -6.562 28.683 hybrid contribution 0.807 -0.852 1.176 1.661 sum -24.905 10.036 -5.386 27.386 Atomic orbital electron populations 1.21625 0.93712 1.01833 1.01727 1.21907 0.96595 0.97800 1.00345 1.21271 0.84318 0.94449 0.94801 0.92824 1.21530 0.84232 0.91924 0.96861 0.90925 1.45816 1.25536 1.51911 1.12410 1.21111 0.84702 0.80562 0.83739 1.90677 1.74065 1.53839 1.26043 1.22031 0.93185 1.01530 0.92007 1.61550 1.28248 1.08741 1.27766 1.22488 0.98987 0.90768 1.00287 1.21118 0.92842 0.95790 0.93231 1.19873 0.95977 0.96347 0.96762 1.21241 0.99343 0.97796 0.94852 1.21430 0.97248 1.00536 0.95936 1.21453 0.96561 0.96232 1.00619 1.21410 1.00680 0.98179 0.94696 1.21272 0.96776 0.99506 0.96486 1.23205 0.95783 0.98751 1.00254 1.21189 0.93982 0.92310 0.87022 1.44748 1.00666 1.68285 1.20113 1.19267 0.90094 1.34575 0.92003 0.89893 1.25730 0.98560 1.02219 0.99426 1.70140 1.09935 1.54471 1.25354 0.85195 0.77167 0.78586 0.78641 1.20440 1.22493 1.19996 0.91276 0.93360 0.92459 0.94964 0.93308 0.74951 0.89069 0.85319 0.94531 0.91382 0.92213 0.92321 0.88465 0.85644 0.84815 0.84509 0.84481 0.85313 0.91952 0.90655 0.99173 0.94035 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.58 71.98 0.69 -2.78 16 2 C -0.13 -4.60 5.41 30.59 0.17 -4.43 16 3 C 0.16 6.04 2.93 45.34 0.13 6.17 16 4 H 0.05 1.87 7.72 -2.39 -0.02 1.86 16 5 C 0.16 5.57 2.02 46.18 0.09 5.67 16 6 H 0.07 2.88 7.19 -2.39 -0.02 2.86 16 7 N -0.70 -17.57 4.90 -436.92 -2.14 -19.71 16 8 C 0.51 13.21 7.55 87.66 0.66 13.87 16 9 O -0.57 -20.26 13.95 -3.03 -0.04 -20.30 16 10 C 0.04 0.71 5.45 85.56 0.47 1.18 16 11 N -0.54 -10.60 4.49 -931.64 -4.18 -14.79 16 12 C 0.02 0.48 8.86 127.69 1.13 1.61 16 13 C 0.10 1.39 5.12 85.56 0.44 1.83 16 14 C -0.09 -1.51 4.89 -19.87 -0.10 -1.61 16 15 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 16 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 17 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 18 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 19 C -0.12 -1.90 7.90 22.27 0.18 -1.73 16 20 C -0.14 -5.49 6.77 31.99 0.22 -5.27 16 21 C 0.18 9.09 5.44 86.80 0.47 9.56 16 22 N -0.61 -30.53 3.14 -667.43 -2.10 -32.63 16 23 C -0.23 -12.50 9.75 84.04 0.82 -11.68 16 24 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 25 C -0.07 -3.73 5.47 84.86 0.46 -3.27 16 26 N -0.95 -57.44 10.57 21.65 0.23 -57.21 16 27 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.29 7.40 -2.39 -0.02 1.27 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.03 1.30 8.07 -2.39 -0.02 1.29 16 35 H 0.05 1.90 7.89 -2.38 -0.02 1.88 16 36 H 0.41 7.63 8.37 -92.71 -0.78 6.86 16 37 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.13 1.50 7.93 -2.39 -0.02 1.48 16 39 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.07 1.43 5.89 -2.38 -0.01 1.42 16 41 H 0.06 1.66 5.88 -2.39 -0.01 1.64 16 42 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 43 H 0.10 1.12 7.87 -2.39 -0.02 1.10 16 44 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 45 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 48 H 0.13 1.63 7.98 -2.91 -0.02 1.60 16 49 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 51 H -0.01 -0.55 8.08 -2.38 -0.02 -0.57 16 52 H 0.04 2.33 6.89 -2.39 -0.02 2.32 16 53 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.82 417.34 0.62 -72.20 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.11 Total: 23.00 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.72 Total: 2.04 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -8.19 Total: -124.34 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.04 Total: -20.30 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.82 0.62 -72.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707204616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.738 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds