Wall clock time and date at job start Wed Apr 1 2020 03:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47520 * 2 1 4 4 C 1.53007 * 109.46975 * 119.99715 * 2 1 3 5 5 H 1.08999 * 109.47336 * 298.85719 * 4 2 1 6 6 C 1.50699 * 109.46854 * 178.85940 * 4 2 1 7 7 O 1.21282 * 120.00291 * 324.12214 * 6 4 2 8 8 N 1.34773 * 119.99806 * 144.12946 * 6 4 2 9 9 C 1.46503 * 119.99994 * 185.28513 * 8 6 4 10 10 C 1.53000 * 109.47414 * 179.97438 * 9 8 6 11 11 C 1.52993 * 109.47520 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47618 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00056 * 270.00762 * 12 11 10 14 14 H 1.08004 * 120.00166 * 142.01884 * 13 12 11 15 15 C 1.38807 * 119.99886 * 322.00997 * 13 12 11 16 16 N 1.31619 * 119.99989 * 163.02307 * 15 13 12 17 17 Si 1.86798 * 120.00181 * 343.01997 * 15 13 12 18 18 H 1.48507 * 109.47099 * 90.44919 * 17 15 13 19 19 H 1.48504 * 109.47266 * 210.44914 * 17 15 13 20 20 H 1.48495 * 109.47202 * 330.45212 * 17 15 13 21 21 C 1.46500 * 119.99549 * 89.99585 * 12 11 10 22 22 C 1.53007 * 117.49587 * 183.16865 * 21 12 11 23 23 C 1.53007 * 117.49382 * 114.51193 * 21 12 11 24 24 C 1.50701 * 109.46862 * 58.86141 * 4 2 1 25 25 C 1.38678 * 120.41664 * 239.99699 * 24 4 2 26 26 C 1.38621 * 118.41854 * 180.02562 * 25 24 4 27 27 C 1.38224 * 119.16479 * 0.02562 * 26 25 24 28 28 N 1.31852 * 120.76476 * 359.97438 * 27 26 25 29 29 C 1.31889 * 121.72499 * 359.70716 * 28 27 26 30 30 H 1.09004 * 109.47006 * 300.00155 * 1 2 3 31 31 H 1.09005 * 109.46952 * 59.99997 * 1 2 3 32 32 H 1.08993 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47639 * 239.99651 * 2 1 3 34 34 H 1.08995 * 109.47003 * 186.06845 * 3 2 1 35 35 H 1.08998 * 109.46408 * 306.06715 * 3 2 1 36 36 H 1.09004 * 109.46972 * 66.06455 * 3 2 1 37 37 H 0.96996 * 120.00726 * 5.27963 * 8 6 4 38 38 H 1.08993 * 109.47491 * 59.99161 * 9 8 6 39 39 H 1.09005 * 109.47241 * 299.99475 * 9 8 6 40 40 H 1.08998 * 109.46924 * 59.99318 * 10 9 8 41 41 H 1.09005 * 109.46597 * 300.00004 * 10 9 8 42 42 H 1.09005 * 109.46892 * 59.99812 * 11 10 9 43 43 H 1.09001 * 109.47291 * 300.00280 * 11 10 9 44 44 H 0.97006 * 120.00237 * 180.02562 * 16 15 13 45 45 H 1.08997 * 115.55474 * 328.84262 * 21 12 11 46 46 H 1.09000 * 117.50153 * 0.02562 * 22 21 12 47 47 H 1.08991 * 117.49601 * 145.02678 * 22 21 12 48 48 H 1.09000 * 117.49742 * 214.97769 * 23 21 12 49 49 H 1.09005 * 117.49849 * 359.97438 * 23 21 12 50 50 H 1.08002 * 120.78598 * 359.97438 * 25 24 4 51 51 H 1.08006 * 120.41765 * 180.02562 * 26 25 24 52 52 H 1.07998 * 119.61739 * 179.97438 * 27 26 25 53 53 H 1.07997 * 119.62169 * 180.30693 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6935 -0.1957 2.1392 6 6 3.5467 -0.7458 1.2353 7 8 4.1414 -0.8701 0.1856 8 7 4.2333 -0.6297 2.3892 9 6 5.6952 -0.5370 2.3655 10 6 6.2217 -0.4133 3.7967 11 6 7.7484 -0.3172 3.7721 12 7 8.2525 -0.1981 5.1425 13 6 8.4124 1.0386 5.7082 14 1 8.1794 1.1892 6.7520 15 6 8.8739 2.0987 4.9402 16 7 8.7171 3.3352 5.3632 17 14 9.7177 1.7706 3.3062 18 1 8.7055 1.7606 2.2196 19 1 10.7170 2.8369 3.0421 20 1 10.4014 0.4534 3.3579 21 6 8.5853 -1.4023 5.9076 22 6 9.0362 -1.2157 7.3577 23 6 10.0525 -1.6161 6.2853 24 6 1.5147 -2.1336 1.2635 25 6 0.7193 -2.5764 2.3097 26 6 0.2591 -3.8837 2.2810 27 6 0.6062 -4.6968 1.2185 28 7 1.3647 -4.2418 0.2407 29 6 1.8152 -3.0023 0.2318 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1246 1.4443 -0.1086 35 1 1.5908 1.9866 -0.8307 36 1 1.7681 1.9240 0.9393 37 1 3.7597 -0.6074 3.2353 38 1 5.9945 0.3399 1.7916 39 1 6.1087 -1.4328 1.9021 40 1 5.9224 -1.2901 4.3709 41 1 5.8082 0.4827 4.2597 42 1 8.0480 0.5595 3.1977 43 1 8.1615 -1.2134 3.3092 44 1 9.0394 4.0761 4.8263 45 1 7.9915 -2.2862 5.6750 46 1 9.0848 -0.1970 7.7426 47 1 8.7394 -1.9770 8.0790 48 1 10.4238 -2.6408 6.3016 49 1 10.7701 -0.8611 5.9641 50 1 0.4652 -1.9186 3.1277 51 1 -0.3629 -4.2621 3.0788 52 1 0.2520 -5.7167 1.1890 53 1 2.4301 -2.6638 -0.5890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713773968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:30 Heat of formation + Delta-G solvation = 14.950989 kcal Electronic energy + Delta-G solvation = -30462.879500 eV Core-core repulsion = 26527.825617 eV Total energy + Delta-G solvation = -3935.053883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83836 -40.43769 -39.11207 -37.37380 -36.55946 -35.29508 -33.82410 -33.49750 -32.49030 -31.52109 -28.81731 -27.96511 -26.89410 -25.47229 -24.61522 -23.58404 -23.18125 -22.70688 -22.09937 -21.41296 -20.59604 -18.51127 -18.34363 -18.11781 -17.52713 -17.25148 -16.99988 -16.77259 -16.75437 -16.19406 -15.57097 -15.39582 -15.30569 -15.11329 -14.64208 -14.47970 -14.34749 -14.15949 -14.02990 -13.97063 -13.82359 -13.57936 -13.47603 -13.06970 -12.85575 -12.77230 -12.66961 -12.52700 -12.43985 -12.14451 -12.08705 -11.89751 -11.78332 -11.66614 -11.51270 -11.21999 -11.09199 -10.96913 -10.64654 -10.61557 -10.39806 -10.13759 -9.89355 -8.66475 -8.20792 -5.62375 0.09917 0.34052 1.24627 1.37239 1.46098 1.56409 2.12697 2.36403 2.83315 3.00679 3.15469 3.34723 3.44035 3.62525 3.68200 3.74197 3.98834 4.01649 4.05881 4.08077 4.14474 4.20256 4.28301 4.33289 4.37103 4.39689 4.47065 4.49956 4.53174 4.62892 4.67649 4.67928 4.77226 4.80045 4.85202 4.94452 4.95055 4.98851 5.02071 5.18683 5.18982 5.19966 5.26265 5.29112 5.32291 5.36343 5.40671 5.44615 5.53852 5.76836 5.94462 6.18971 6.51794 6.97215 7.02080 7.19484 7.61187 8.01270 8.97919 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.002628 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.875923 B =10650.317134 C =11950.450029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 C -0.150 4.150 4 C -0.049 4.049 5 H 0.128 0.872 6 C 0.517 3.483 7 O -0.576 6.576 8 N -0.715 5.715 9 C 0.128 3.872 10 C -0.125 4.125 11 C 0.131 3.869 12 N -0.589 5.589 13 C -0.243 4.243 14 H 0.053 0.947 15 C -0.017 4.017 16 N -0.950 5.950 17 Si 0.938 3.062 18 H -0.272 1.272 19 H -0.315 1.315 20 H -0.263 1.263 21 C 0.106 3.894 22 C -0.184 4.184 23 C -0.218 4.218 24 C -0.126 4.126 25 C -0.064 4.064 26 C -0.162 4.162 27 C 0.082 3.918 28 N -0.516 5.516 29 C 0.092 3.908 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.414 0.586 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.066 0.934 44 H 0.262 0.738 45 H 0.128 0.872 46 H 0.068 0.932 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.057 0.943 50 H 0.169 0.831 51 H 0.170 0.830 52 H 0.177 0.823 53 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.351 -13.616 -5.413 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.207 4.207 4 C -0.071 4.071 5 H 0.146 0.854 6 C 0.304 3.696 7 O -0.455 6.455 8 N -0.367 5.367 9 C 0.003 3.997 10 C -0.165 4.165 11 C 0.006 3.994 12 N -0.308 5.308 13 C -0.373 4.373 14 H 0.070 0.930 15 C -0.213 4.213 16 N -0.595 5.595 17 Si 0.769 3.231 18 H -0.200 1.200 19 H -0.244 1.244 20 H -0.187 1.187 21 C -0.001 4.001 22 C -0.222 4.222 23 C -0.258 4.258 24 C -0.129 4.129 25 C -0.090 4.090 26 C -0.182 4.182 27 C -0.075 4.075 28 N -0.224 5.224 29 C -0.064 4.064 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.251 0.749 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.145 0.855 46 H 0.086 0.914 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.075 0.925 50 H 0.186 0.814 51 H 0.188 0.812 52 H 0.194 0.806 53 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.665 -14.078 -6.883 25.935 hybrid contribution 0.833 1.251 0.160 1.512 sum -19.832 -12.827 -6.723 24.557 Atomic orbital electron populations 1.21771 0.92587 1.01872 1.03147 1.20970 0.97133 0.95658 0.95558 1.21875 1.00052 0.95675 1.03123 1.20370 0.89500 0.94026 1.03166 0.85393 1.20969 0.90564 0.74801 0.83243 1.90678 1.71840 1.50554 1.32413 1.46011 1.07289 1.73914 1.09493 1.21176 0.80068 1.00868 0.97612 1.22078 0.97159 1.02810 0.94432 1.21206 0.93061 0.99456 0.85649 1.43778 1.73203 1.01498 1.12352 1.18611 1.37158 0.85299 0.96262 0.92980 1.25992 0.98834 0.95096 1.01426 1.69910 1.49742 0.98864 1.40940 0.86009 0.78522 0.77045 0.81507 1.19961 1.24409 1.18730 1.21516 0.94398 0.90390 0.93763 1.23046 1.04794 1.01793 0.92529 1.23372 0.95066 1.01288 1.06097 1.20370 1.00452 0.95218 0.96841 1.21919 0.93440 0.96596 0.97044 1.22517 1.01185 0.94209 1.00269 1.23337 0.93113 1.01439 0.89572 1.67701 1.11040 1.15462 1.28243 1.22596 0.96839 0.89193 0.97781 0.90798 0.91774 0.93077 0.91944 0.94974 0.91202 0.91224 0.74895 0.93780 0.91761 0.89803 0.92398 0.94980 0.91527 0.92925 0.85478 0.91368 0.86781 0.87170 0.92451 0.81396 0.81204 0.80604 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.93 71.98 0.64 -1.13 16 2 C -0.07 -1.34 2.02 -10.79 -0.02 -1.36 16 3 C -0.15 -2.85 8.84 71.98 0.64 -2.22 16 4 C -0.05 -0.85 1.97 -12.28 -0.02 -0.88 16 5 H 0.13 1.47 7.92 -2.39 -0.02 1.45 16 6 C 0.52 13.22 5.55 87.66 0.49 13.71 16 7 O -0.58 -19.49 15.31 -3.03 -0.05 -19.54 16 8 N -0.72 -17.22 5.55 -463.06 -2.57 -19.79 16 9 C 0.13 3.80 5.68 86.38 0.49 4.29 16 10 C -0.12 -3.98 5.65 30.59 0.17 -3.81 16 11 C 0.13 5.16 4.50 86.38 0.39 5.55 16 12 N -0.59 -25.98 2.44 -678.02 -1.65 -27.63 16 13 C -0.24 -13.14 9.03 84.03 0.76 -12.38 16 14 H 0.05 3.12 6.83 -2.91 -0.02 3.10 16 15 C -0.02 -0.98 5.39 84.86 0.46 -0.53 16 16 N -0.95 -58.41 13.97 21.65 0.30 -58.11 16 17 Si 0.94 46.52 24.88 68.60 1.71 48.23 16 18 H -0.27 -12.87 6.53 99.48 0.65 -12.22 16 19 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 20 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 21 C 0.11 3.87 6.56 45.00 0.30 4.17 16 22 C -0.18 -6.48 9.80 30.62 0.30 -6.18 16 23 C -0.22 -7.67 10.36 30.62 0.32 -7.35 16 24 C -0.13 -2.20 3.46 -19.77 -0.07 -2.27 16 25 C -0.06 -0.75 9.81 22.47 0.22 -0.53 16 26 C -0.16 -1.75 10.11 22.36 0.23 -1.53 16 27 C 0.08 1.27 11.18 84.69 0.95 2.22 16 28 N -0.52 -11.82 10.36 -195.85 -2.03 -13.85 16 29 C 0.09 2.13 10.00 84.67 0.85 2.97 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.71 7.18 -2.39 -0.02 0.70 16 33 H 0.06 1.41 7.12 -2.39 -0.02 1.40 16 34 H 0.03 0.80 7.14 -2.39 -0.02 0.78 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.41 7.47 8.47 -92.71 -0.78 6.68 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.03 1.44 2.76 -2.38 -0.01 1.44 16 43 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 44 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 45 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 46 H 0.07 2.91 6.43 -2.39 -0.02 2.89 16 47 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 48 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 49 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 50 H 0.17 0.87 8.00 -2.91 -0.02 0.84 16 51 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 52 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 53 H 0.14 3.60 7.10 -2.91 -0.02 3.58 16 Total: -1.00 -74.29 421.24 2.83 -71.46 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.05 Total: 26.46 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 7.07 Total: -7.24 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.95 Total: -119.38 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.71 Total: 48.23 kcal Total: -74.29 2.83 -71.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713773968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.411 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds