Wall clock time and date at job start Wed Apr 1 2020 04:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39039 * 120.00223 * 90.00088 * 4 3 2 7 7 C 1.39224 * 119.92964 * 359.72380 * 6 4 3 8 8 C 1.37604 * 120.06767 * 179.72730 * 7 6 4 9 9 C 1.39800 * 119.92862 * 0.54315 * 8 7 6 10 10 C 1.47527 * 120.06603 * 179.70275 * 9 8 7 11 11 O 1.21598 * 119.99329 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00378 * 0.02562 * 10 9 8 13 13 C 1.46502 * 120.00475 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47286 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47302 * 65.00060 * 14 13 12 16 16 N 1.46501 * 109.47037 * 304.99621 * 14 13 12 17 17 C 1.36930 * 119.99805 * 154.99874 * 16 14 13 18 18 H 1.08003 * 120.00592 * 0.02562 * 17 16 14 19 19 C 1.38816 * 119.99984 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99637 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00221 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 120.00375 * 21 19 17 24 24 H 1.48502 * 109.47402 * 240.00603 * 21 19 17 25 25 C 1.53001 * 109.46657 * 185.00089 * 14 13 12 26 26 C 1.53002 * 117.49482 * 248.74004 * 25 14 13 27 27 C 1.53004 * 117.49586 * 180.08500 * 25 14 13 28 28 C 1.39793 * 119.86652 * 359.73031 * 9 8 7 29 29 C 1.37611 * 119.92848 * 359.97438 * 28 9 8 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 33 33 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 34 34 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 37 37 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 38 38 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 39 39 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 40 40 H 1.07999 * 119.96903 * 359.97438 * 7 6 4 41 41 H 1.08000 * 120.04069 * 180.24933 * 8 7 6 42 42 H 0.97004 * 119.99844 * 0.02562 * 12 10 9 43 43 H 1.08998 * 109.46625 * 300.00052 * 13 12 10 44 44 H 1.08997 * 109.46999 * 59.99607 * 13 12 10 45 45 H 0.97001 * 120.00128 * 335.00968 * 16 14 13 46 46 H 0.97006 * 119.99628 * 179.97438 * 20 19 17 47 47 H 1.08995 * 115.55228 * 34.41720 * 25 14 13 48 48 H 1.08997 * 117.50025 * 0.02562 * 26 25 14 49 49 H 1.09007 * 117.49395 * 145.02607 * 26 25 14 50 50 H 1.08999 * 117.49907 * 214.97746 * 27 25 14 51 51 H 1.09004 * 117.49694 * 359.97438 * 27 25 14 52 52 H 1.08000 * 120.04005 * 179.97438 * 28 9 8 53 53 H 1.07997 * 119.96525 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1998 1.4427 -1.2050 7 6 3.5017 1.4371 -2.4096 8 6 4.1864 1.4429 -3.6032 9 6 5.5844 1.4429 -3.6054 10 6 6.3215 1.4426 -4.8833 11 8 7.5374 1.4421 -4.8837 12 7 5.6472 1.4427 -6.0502 13 6 6.3791 1.4428 -7.3193 14 6 5.3844 1.4436 -8.4818 15 1 4.8186 2.3751 -8.4752 16 7 4.4647 0.3124 -8.3382 17 6 3.2204 0.3652 -8.9074 18 1 2.9172 1.2405 -9.4626 19 6 2.3491 -0.7069 -8.7718 20 7 2.7188 -1.7739 -8.0956 21 14 0.6520 -0.6353 -9.5490 22 1 0.4828 0.6631 -10.2497 23 1 0.5066 -1.7460 -10.5238 24 1 -0.3826 -0.7660 -8.4917 25 6 6.1448 1.3180 -9.8035 26 6 6.1542 2.5346 -10.7313 27 6 5.3217 1.3021 -11.0932 28 6 6.2824 1.4428 -2.3942 29 6 5.5920 1.4431 -1.2039 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 4.4198 0.4147 1.5823 38 1 5.1903 1.9563 1.1372 39 1 3.6492 1.9562 2.0277 40 1 2.4217 1.4322 -2.4073 41 1 3.6444 1.4426 -4.5374 42 1 4.6772 1.4434 -6.0498 43 1 7.0057 2.3329 -7.3771 44 1 7.0058 0.5529 -7.3774 45 1 4.7370 -0.4739 -7.8397 46 1 2.1097 -2.5229 -8.0006 47 1 7.0433 0.7018 -9.7723 48 1 5.6192 3.4245 -10.3999 49 1 7.0590 2.7185 -11.3108 50 1 5.6790 0.6758 -11.9106 51 1 4.2385 1.3807 -10.9999 52 1 7.3624 1.4424 -2.3927 53 1 6.1307 1.4426 -0.2678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713884645.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:30 Heat of formation + Delta-G solvation = 11.737896 kcal Electronic energy + Delta-G solvation = -30082.970688 eV Core-core repulsion = 26147.777474 eV Total energy + Delta-G solvation = -3935.193214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.22824 -40.12385 -38.97366 -37.44903 -36.08724 -35.15493 -34.37926 -32.79076 -31.99429 -31.16920 -29.43196 -28.40366 -26.42361 -25.45827 -24.13682 -23.23361 -23.08064 -22.98224 -21.97934 -21.31378 -20.72408 -19.46904 -18.89258 -17.81416 -17.30276 -16.84794 -16.50869 -16.17505 -16.12032 -15.97479 -15.66163 -15.63391 -15.28275 -15.07958 -14.91523 -14.72408 -14.52629 -14.29658 -13.90179 -13.76415 -13.40787 -13.30826 -13.06255 -12.97794 -12.88590 -12.78637 -12.69942 -12.62380 -12.37494 -12.24949 -12.22577 -11.94233 -11.77310 -11.71276 -11.53525 -11.08998 -10.99539 -10.83118 -10.80298 -10.72450 -9.99854 -9.96905 -8.98144 -8.27666 -7.86427 -5.14324 0.09323 0.49304 1.49124 1.51530 1.59222 1.97275 2.13164 2.34099 2.59367 3.00510 3.09371 3.50257 3.76656 3.81939 3.88795 3.95168 4.01451 4.04663 4.09370 4.18953 4.26911 4.36579 4.38543 4.40798 4.43822 4.45946 4.58681 4.60112 4.66738 4.68724 4.71181 4.75293 4.87064 4.90792 4.91368 4.94202 5.06739 5.17009 5.17946 5.18150 5.20405 5.24212 5.35550 5.41606 5.42727 5.47992 5.50903 5.59421 5.63673 5.77197 6.29451 6.32585 6.45220 6.65397 7.29786 7.40896 8.11541 8.37845 9.36492 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009122 B = 0.002972 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.774859 B = 9419.437671 C =12033.431388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.083 3.917 6 C 0.243 3.757 7 C -0.212 4.212 8 C -0.034 4.034 9 C -0.220 4.220 10 C 0.557 3.443 11 O -0.594 6.594 12 N -0.710 5.710 13 C 0.128 3.872 14 C 0.198 3.802 15 H 0.058 0.942 16 N -0.723 5.723 17 C -0.217 4.217 18 H 0.078 0.922 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.303 1.303 24 H -0.297 1.297 25 C -0.174 4.174 26 C -0.162 4.162 27 C -0.173 4.173 28 C -0.017 4.017 29 C -0.209 4.209 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.123 0.877 42 H 0.408 0.592 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.372 0.628 46 H 0.247 0.753 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.107 0.893 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.129 0.871 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 9.948 18.309 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.006 4.006 4 N -0.331 5.331 5 C -0.059 4.059 6 C 0.137 3.863 7 C -0.234 4.234 8 C -0.054 4.054 9 C -0.225 4.225 10 C 0.347 3.653 11 O -0.477 6.477 12 N -0.361 5.361 13 C 0.003 3.997 14 C 0.089 3.911 15 H 0.076 0.924 16 N -0.363 5.363 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.231 1.231 24 H -0.224 1.224 25 C -0.195 4.195 26 C -0.199 4.199 27 C -0.210 4.210 28 C -0.037 4.037 29 C -0.232 4.232 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.245 0.755 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.204 0.796 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.114 0.886 49 H 0.125 0.875 50 H 0.105 0.895 51 H 0.100 0.900 52 H 0.147 0.853 53 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.612 10.046 18.401 20.973 hybrid contribution -1.216 -1.066 -0.740 1.778 sum -0.604 8.980 17.661 19.822 Atomic orbital electron populations 1.21693 0.94309 1.02158 1.02520 1.21920 0.96798 0.97423 1.01807 1.21733 0.78161 0.96733 1.03994 1.46678 1.05711 1.77482 1.03211 1.21910 0.97858 1.02079 0.84084 1.18108 0.91445 0.90222 0.86490 1.20735 1.00478 1.11553 0.90614 1.21145 0.92598 0.93049 0.98586 1.19611 0.93929 1.16066 0.92886 1.18576 0.86808 0.75237 0.84652 1.90673 1.14926 1.53694 1.88456 1.45879 1.11169 1.73795 1.05236 1.21483 0.94335 1.01467 0.82391 1.20142 0.89223 0.91387 0.90367 0.92430 1.42570 1.13034 1.17292 1.63371 1.19490 0.90585 1.00126 1.24682 0.90463 1.25350 1.01603 0.96699 1.02455 1.69828 1.36872 1.07213 1.47794 0.85285 0.81149 0.77234 0.77384 1.19070 1.23052 1.22420 1.22910 1.01101 1.02492 0.93028 1.23037 1.02266 0.91861 1.02765 1.22742 0.98488 1.01610 0.98178 1.21026 1.00142 0.91936 0.90617 1.20794 0.92018 1.11660 0.98694 0.92704 0.92764 0.91101 0.93768 0.91559 0.90635 0.88238 0.92813 0.90501 0.89252 0.84384 0.85935 0.75461 0.90312 0.93234 0.79605 0.94440 0.88907 0.88575 0.87501 0.89541 0.90016 0.85264 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.14 -2.09 6.26 30.60 0.19 -1.90 16 3 C 0.12 1.55 5.18 86.38 0.45 2.00 16 4 N -0.62 -10.11 2.99 -722.19 -2.16 -12.27 16 5 C 0.08 0.86 10.22 127.77 1.31 2.16 16 6 C 0.24 5.44 6.55 38.47 0.25 5.70 16 7 C -0.21 -5.36 9.18 22.36 0.21 -5.16 16 8 C -0.03 -1.02 9.53 22.50 0.21 -0.81 16 9 C -0.22 -7.20 5.88 -20.07 -0.12 -7.31 16 10 C 0.56 21.14 7.76 86.69 0.67 21.81 16 11 O -0.59 -25.56 16.34 -4.02 -0.07 -25.63 16 12 N -0.71 -26.00 5.34 -466.28 -2.49 -28.49 16 13 C 0.13 4.60 5.22 86.38 0.45 5.05 16 14 C 0.20 7.42 2.70 44.99 0.12 7.54 16 15 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 16 N -0.72 -33.72 4.54 -322.94 -1.47 -35.19 16 17 C -0.22 -11.05 8.63 84.04 0.73 -10.32 16 18 H 0.08 3.80 6.91 -2.91 -0.02 3.78 16 19 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 20 N -0.97 -57.07 13.06 21.65 0.28 -56.79 16 21 Si 0.96 44.54 29.55 68.60 2.03 46.57 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 25 C -0.17 -5.97 5.36 -10.79 -0.06 -6.03 16 26 C -0.16 -4.54 10.18 30.62 0.31 -4.23 16 27 C -0.17 -5.98 9.78 30.62 0.30 -5.68 16 28 C -0.02 -0.50 9.58 22.50 0.22 -0.28 16 29 C -0.21 -4.76 9.18 22.36 0.21 -4.55 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.09 6.18 -2.39 -0.01 1.08 16 36 H 0.10 0.86 7.89 -2.39 -0.02 0.84 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.08 0.73 6.17 -2.39 -0.01 0.71 16 39 H 0.09 0.55 7.89 -2.39 -0.02 0.53 16 40 H 0.14 3.08 6.12 -2.91 -0.02 3.07 16 41 H 0.12 3.75 6.39 -2.91 -0.02 3.73 16 42 H 0.41 14.95 6.16 -92.70 -0.57 14.38 16 43 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.37 19.44 7.80 -92.71 -0.72 18.72 16 46 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 47 H 0.09 3.16 8.11 -2.39 -0.02 3.14 16 48 H 0.10 2.54 8.05 -2.39 -0.02 2.52 16 49 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 50 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.08 3.21 6.23 -2.38 -0.01 3.19 16 52 H 0.13 3.67 7.64 -2.91 -0.02 3.65 16 53 H 0.15 2.54 6.11 -2.91 -0.02 2.52 16 Total: -1.00 -66.64 424.95 2.38 -64.26 By element: Atomic # 1 Polarization: 54.36 SS G_CDS: -0.37 Total: 53.99 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 6.62 Total: -6.46 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.83 Total: -132.73 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.63 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.64 2.38 -64.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713884645.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.000 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds