Wall clock time and date at job start Wed Apr 1 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 C 1.53001 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47250 * 305.00180 * 4 3 2 6 6 C 1.50700 * 109.46895 * 184.99926 * 4 3 2 7 7 O 1.21274 * 120.00016 * 239.99583 * 6 4 3 8 8 N 1.34772 * 120.00031 * 60.00317 * 6 4 3 9 9 C 1.46503 * 120.00229 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47143 * 174.47132 * 9 8 6 11 11 H 1.08993 * 109.59283 * 55.97891 * 10 9 8 12 12 C 1.53198 * 109.58721 * 176.41327 * 10 9 8 13 13 C 1.53038 * 109.31519 * 174.42078 * 12 10 9 14 14 C 1.53037 * 109.53556 * 298.63290 * 13 12 10 15 15 C 1.53190 * 109.31726 * 61.36453 * 14 13 12 16 16 N 1.46926 * 109.58551 * 295.69534 * 10 9 8 17 17 C 1.36937 * 120.63127 * 6.63226 * 16 10 9 18 18 H 1.08000 * 120.00199 * 39.27880 * 17 16 10 19 19 C 1.38814 * 120.00105 * 219.28436 * 17 16 10 20 20 N 1.31623 * 120.00103 * 10.40067 * 19 17 16 21 21 Si 1.86795 * 120.00148 * 190.40459 * 19 17 16 22 22 H 1.48503 * 109.47385 * 59.99702 * 21 19 17 23 23 H 1.48495 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47038 * 300.00031 * 21 19 17 25 25 C 1.50703 * 109.47370 * 65.00104 * 4 3 2 26 26 C 1.38227 * 119.62025 * 85.25322 * 25 4 3 27 27 C 1.38623 * 119.16260 * 180.27610 * 26 25 4 28 28 C 1.38681 * 118.41854 * 359.47950 * 27 26 25 29 29 C 1.38178 * 119.16014 * 0.25489 * 28 27 26 30 30 N 1.31858 * 119.61708 * 265.00029 * 25 4 3 31 31 H 1.09000 * 109.47279 * 300.00070 * 1 2 3 32 32 H 1.09001 * 109.47060 * 59.99506 * 1 2 3 33 33 H 1.08997 * 109.47734 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46769 * 239.99860 * 2 1 3 35 35 H 1.09001 * 109.47060 * 120.00494 * 2 1 3 36 36 H 1.08998 * 109.47358 * 60.00220 * 3 2 1 37 37 H 1.09002 * 109.47120 * 299.99847 * 3 2 1 38 38 H 0.97009 * 120.00255 * 359.97438 * 8 6 4 39 39 H 1.08997 * 109.46708 * 294.46806 * 9 8 6 40 40 H 1.08996 * 109.47082 * 54.46961 * 9 8 6 41 41 H 1.09009 * 109.49017 * 294.37200 * 12 10 9 42 42 H 1.08994 * 109.49672 * 54.46206 * 12 10 9 43 43 H 1.08998 * 109.46083 * 178.61152 * 13 12 10 44 44 H 1.09002 * 109.45075 * 58.64316 * 13 12 10 45 45 H 1.09005 * 109.50038 * 301.41186 * 14 13 12 46 46 H 1.08998 * 109.49779 * 181.31865 * 14 13 12 47 47 H 1.08995 * 109.59160 * 185.57949 * 15 14 13 48 48 H 1.08998 * 109.70300 * 65.22323 * 15 14 13 49 49 H 0.96991 * 119.99987 * 180.02562 * 20 19 17 50 50 H 1.08002 * 120.41284 * 0.02562 * 26 25 4 51 51 H 1.07996 * 120.79176 * 179.76086 * 27 26 25 52 52 H 1.07994 * 120.41359 * 180.23132 * 28 27 26 53 53 H 1.08001 * 119.61388 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0724 2.8578 0.1232 7 8 4.7694 3.3323 -0.7485 8 7 3.7474 3.5962 1.2027 9 6 4.2362 4.9720 1.3234 10 6 3.6164 5.6269 2.5594 11 1 3.8357 5.0246 3.4409 12 6 4.1938 7.0345 2.7388 13 6 3.4705 7.7352 3.8913 14 6 1.9820 7.8624 3.5594 15 6 1.3795 6.4643 3.3892 16 7 2.1614 5.7315 2.3840 17 6 1.5456 5.1566 1.3045 18 1 1.8701 4.1896 0.9494 19 6 0.5044 5.8166 0.6664 20 7 0.2423 7.0723 0.9613 21 14 -0.5248 4.9228 -0.6107 22 1 -1.1770 3.7446 0.0154 23 1 -1.5652 5.8412 -1.1391 24 1 0.3492 4.4715 -1.7233 25 6 4.0719 0.8421 -1.2887 26 6 4.2054 1.6414 -2.4085 27 6 4.6624 1.0782 -3.5898 28 6 4.9798 -0.2718 -3.5978 29 6 4.8260 -1.0065 -2.4377 30 7 4.3832 -0.4384 -1.3330 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.1897 3.2168 1.8999 39 1 5.3217 4.9645 1.4220 40 1 3.9560 5.5365 0.4341 41 1 5.2577 6.9650 2.9656 42 1 4.0535 7.6050 1.8208 43 1 3.8962 8.7279 4.0371 44 1 3.5905 7.1510 4.8037 45 1 1.8625 8.4252 2.6335 46 1 1.4717 8.3823 4.3701 47 1 0.3452 6.5501 3.0562 48 1 1.4143 5.9310 4.3392 49 1 -0.4855 7.5334 0.5158 50 1 3.9531 2.6906 -2.3646 51 1 4.7730 1.6774 -4.4815 52 1 5.3422 -0.7429 -4.4995 53 1 5.0714 -2.0583 -2.4356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714110870.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:06 Heat of formation + Delta-G solvation = -5.283506 kcal Electronic energy + Delta-G solvation = -32270.270367 eV Core-core repulsion = 28334.339050 eV Total energy + Delta-G solvation = -3935.931317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.80917 -40.40610 -39.21534 -36.75978 -35.80422 -34.74815 -33.40846 -33.01218 -32.35374 -31.68708 -30.12858 -27.64575 -26.59206 -25.62402 -24.45935 -23.82565 -23.42598 -22.20537 -22.08587 -21.14320 -20.52468 -18.78004 -17.95681 -17.78036 -17.10491 -17.07950 -16.80339 -16.23615 -16.15614 -15.96061 -15.64449 -15.38278 -15.01440 -14.85030 -14.72833 -14.49521 -14.33550 -14.10295 -13.83284 -13.77044 -13.52895 -13.43000 -13.17518 -13.03886 -13.01940 -12.77920 -12.57108 -12.42595 -12.23281 -12.09090 -12.02367 -11.92236 -11.77278 -11.56781 -11.45995 -11.15328 -11.00778 -10.84883 -10.49878 -10.37467 -10.36209 -9.82821 -9.74958 -8.34089 -7.75776 -5.33102 0.21013 0.41436 1.41605 1.44854 1.46219 1.63574 2.25246 2.51635 2.91315 3.27346 3.39309 3.57011 3.66632 3.91749 3.95631 4.03012 4.06550 4.09695 4.23298 4.27648 4.30196 4.31587 4.33986 4.46789 4.54068 4.61118 4.64200 4.68335 4.72298 4.76196 4.85027 4.91549 4.95567 4.97388 5.01380 5.04460 5.18358 5.18513 5.25088 5.25738 5.31794 5.34192 5.36024 5.43037 5.44482 5.51047 5.63025 5.75834 5.84490 5.85690 5.98506 6.58137 6.63792 7.04841 7.29239 7.30325 7.93716 8.52166 9.26098 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.003884 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.428381 B = 7207.945783 C = 8216.161558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.105 4.105 4 C -0.047 4.047 5 H 0.131 0.869 6 C 0.512 3.488 7 O -0.576 6.576 8 N -0.692 5.692 9 C 0.144 3.856 10 C 0.159 3.841 11 H 0.056 0.944 12 C -0.124 4.124 13 C -0.101 4.101 14 C -0.121 4.121 15 C 0.166 3.834 16 N -0.597 5.597 17 C -0.248 4.248 18 H 0.089 0.911 19 C -0.036 4.036 20 N -0.918 5.918 21 Si 0.927 3.073 22 H -0.267 1.267 23 H -0.304 1.304 24 H -0.289 1.289 25 C 0.127 3.873 26 C -0.157 4.157 27 C -0.094 4.094 28 C -0.166 4.166 29 C 0.082 3.918 30 N -0.489 5.489 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.412 0.588 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.036 0.964 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.015 0.985 49 H 0.241 0.759 50 H 0.122 0.878 51 H 0.147 0.853 52 H 0.167 0.833 53 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 -13.876 -0.329 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.144 4.144 4 C -0.069 4.069 5 H 0.148 0.852 6 C 0.298 3.702 7 O -0.458 6.458 8 N -0.342 5.342 9 C 0.020 3.980 10 C 0.054 3.946 11 H 0.073 0.927 12 C -0.164 4.164 13 C -0.139 4.139 14 C -0.160 4.160 15 C 0.041 3.959 16 N -0.322 5.322 17 C -0.379 4.379 18 H 0.106 0.894 19 C -0.232 4.232 20 N -0.563 5.563 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.231 1.231 24 H -0.216 1.216 25 C -0.011 4.011 26 C -0.177 4.177 27 C -0.120 4.120 28 C -0.186 4.186 29 C -0.075 4.075 30 N -0.198 5.198 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.249 0.751 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.032 0.968 49 H 0.051 0.949 50 H 0.140 0.860 51 H 0.164 0.836 52 H 0.185 0.815 53 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.871 -13.933 -0.226 16.005 hybrid contribution -1.170 1.022 -1.654 2.269 sum 6.701 -12.911 -1.879 14.667 Atomic orbital electron populations 1.21797 0.95659 1.02267 1.01429 1.21399 0.95634 0.94401 1.02953 1.21609 0.90795 0.99295 1.02656 1.20080 0.97406 0.92170 0.97243 0.85157 1.20610 0.79904 0.88161 0.81488 1.90615 1.40518 1.74011 1.40614 1.45921 1.51782 1.13762 1.22691 1.21202 0.96858 0.81451 0.98480 1.21021 0.84625 0.94382 0.94614 0.92687 1.21898 0.99330 0.96926 0.98206 1.21349 0.94928 0.99918 0.97687 1.21754 0.96073 0.98797 0.99369 1.20668 0.96240 0.89977 0.89046 1.44315 1.00540 1.63182 1.24135 1.19756 1.13015 0.99751 1.05403 0.89353 1.25864 1.02924 0.95330 0.99131 1.70081 1.31382 1.09901 1.44950 0.85973 0.78994 0.78577 0.80738 1.19200 1.23138 1.21610 1.20461 0.96510 0.89996 0.94088 1.22357 0.99889 1.01329 0.94100 1.21918 0.95994 0.96231 0.97901 1.22473 1.00767 0.94201 1.01132 1.23266 0.94932 1.01547 0.87786 1.67389 1.11434 1.10906 1.30121 0.92595 0.94312 0.90968 0.92462 0.89942 0.89934 0.93892 0.75089 0.91163 0.94419 0.90417 0.94876 0.92071 0.91382 0.94545 0.92990 0.93117 0.96753 0.94935 0.85996 0.83563 0.81515 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.91 71.98 0.71 -2.98 16 2 C -0.11 -2.61 5.71 30.59 0.17 -2.43 16 3 C -0.11 -3.09 4.62 30.59 0.14 -2.94 16 4 C -0.05 -1.39 2.52 -12.28 -0.03 -1.42 16 5 H 0.13 3.29 8.14 -2.38 -0.02 3.27 16 6 C 0.51 18.05 6.91 87.66 0.61 18.66 16 7 O -0.58 -23.96 13.08 -3.01 -0.04 -24.00 16 8 N -0.69 -23.44 3.18 -463.08 -1.47 -24.91 16 9 C 0.14 5.30 4.54 86.38 0.39 5.69 16 10 C 0.16 5.78 2.96 44.98 0.13 5.92 16 11 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 12 C -0.12 -4.22 5.37 30.67 0.16 -4.06 16 13 C -0.10 -3.28 5.88 30.62 0.18 -3.10 16 14 C -0.12 -4.81 6.07 30.67 0.19 -4.63 16 15 C 0.17 7.29 5.62 86.36 0.49 7.77 16 16 N -0.60 -26.40 2.93 -675.24 -1.98 -28.38 16 17 C -0.25 -12.12 7.87 84.03 0.66 -11.46 16 18 H 0.09 4.05 4.33 -2.91 -0.01 4.04 16 19 C -0.04 -1.90 5.04 84.86 0.43 -1.47 16 20 N -0.92 -51.90 11.12 21.65 0.24 -51.66 16 21 Si 0.93 44.11 29.57 68.60 2.03 46.14 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 C 0.13 3.87 4.89 42.55 0.21 4.08 16 26 C -0.16 -5.08 8.27 22.36 0.18 -4.90 16 27 C -0.09 -2.39 10.18 22.47 0.23 -2.16 16 28 C -0.17 -3.27 10.11 22.36 0.23 -3.04 16 29 C 0.08 1.72 11.18 84.67 0.95 2.67 16 30 N -0.49 -13.20 9.61 -183.89 -1.77 -14.97 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.48 6.89 -2.39 -0.02 1.46 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 2.43 6.83 -2.39 -0.02 2.42 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.41 12.76 7.04 -92.70 -0.65 12.11 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.04 1.71 7.76 -2.39 -0.02 1.69 16 41 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.04 1.73 7.90 -2.38 -0.02 1.71 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 2.60 6.04 -2.39 -0.01 2.59 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.24 13.70 8.31 -92.72 -0.77 12.93 16 50 H 0.12 4.67 5.92 -2.91 -0.02 4.65 16 51 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 52 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 53 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -64.89 407.64 3.29 -61.60 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.24 Total: 35.97 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.03 Total: 0.20 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -4.97 Total: -119.91 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -64.89 3.29 -61.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714110870.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.320 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds