Wall clock time and date at job start Wed Apr 1 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 N 1.46496 * 109.47409 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99587 * 269.99905 * 4 3 2 6 6 C 1.39040 * 120.00535 * 89.99662 * 4 3 2 7 7 C 1.39219 * 119.93257 * 180.02562 * 6 4 3 8 8 C 1.37613 * 120.06970 * 179.97438 * 7 6 4 9 9 C 1.39798 * 119.92978 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.06682 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99935 * 7.31457 * 10 9 8 12 12 N 1.34776 * 119.99540 * 187.31041 * 10 9 8 13 13 C 1.47021 * 125.65270 * 354.34291 * 12 10 9 14 14 C 1.54323 * 107.27153 * 181.01174 * 13 12 10 15 15 C 1.55158 * 102.94271 * 22.19476 * 14 13 12 16 16 H 1.08993 * 111.00492 * 82.60660 * 15 14 13 17 17 C 1.53000 * 111.00190 * 206.42404 * 15 14 13 18 18 N 1.46503 * 109.47056 * 184.99639 * 17 15 14 19 19 C 1.36930 * 120.00236 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99713 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00521 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99207 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00355 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47258 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.46921 * 300.00433 * 23 21 19 26 26 H 1.48510 * 109.46885 * 59.99878 * 23 21 19 27 27 C 1.47430 * 125.64624 * 174.28698 * 12 10 9 28 28 C 1.39795 * 119.86261 * 0.27168 * 9 8 7 29 29 C 1.37609 * 119.93099 * 359.42640 * 28 9 8 30 30 H 1.09000 * 109.47465 * 300.00327 * 1 2 3 31 31 H 1.08997 * 109.47246 * 60.00361 * 1 2 3 32 32 H 1.08996 * 109.47449 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47147 * 240.00379 * 2 1 3 34 34 H 1.08997 * 109.47246 * 119.99639 * 2 1 3 35 35 H 1.09000 * 109.47128 * 59.99466 * 3 2 1 36 36 H 1.09011 * 109.46806 * 300.00106 * 3 2 1 37 37 H 1.09000 * 109.46873 * 269.99970 * 5 4 3 38 38 H 1.09007 * 109.47438 * 29.99751 * 5 4 3 39 39 H 1.09000 * 109.47196 * 149.99562 * 5 4 3 40 40 H 1.07998 * 119.96703 * 359.97375 * 7 6 4 41 41 H 1.07997 * 120.03540 * 179.97438 * 8 7 6 42 42 H 1.08993 * 109.88255 * 61.59235 * 13 12 10 43 43 H 1.09000 * 109.87744 * 300.42862 * 13 12 10 44 44 H 1.08992 * 110.72105 * 263.82752 * 14 13 12 45 45 H 1.09000 * 110.86917 * 140.62488 * 14 13 12 46 46 H 1.09001 * 109.47247 * 64.99722 * 17 15 14 47 47 H 1.08994 * 109.47080 * 304.99538 * 17 15 14 48 48 H 0.97004 * 120.00003 * 0.02562 * 18 17 15 49 49 H 0.96994 * 120.00593 * 0.02562 * 22 21 19 50 50 H 1.08998 * 110.36202 * 37.08015 * 27 12 10 51 51 H 1.09000 * 110.36348 * 274.76297 * 27 12 10 52 52 H 1.08002 * 120.03295 * 179.72667 * 28 9 8 53 53 H 1.07991 * 119.96976 * 180.29874 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2379 1.4424 1.2679 6 6 4.1998 1.4426 -1.2050 7 6 5.5920 1.4421 -1.2038 8 6 6.2825 1.4417 -2.3941 9 6 5.5845 1.4424 -3.6054 10 6 6.3217 1.4413 -4.8832 11 8 7.5301 1.3059 -4.8879 12 7 5.6558 1.5905 -6.0454 13 6 4.1942 1.6454 -6.1946 14 6 3.8927 1.7978 -7.7004 15 6 5.1816 1.2520 -8.3699 16 1 5.1579 0.1642 -8.4341 17 6 5.3883 1.8758 -9.7516 18 7 6.5437 1.2518 -10.4012 19 6 6.9225 1.6511 -11.6550 20 1 6.3698 2.4265 -12.1648 21 6 8.0170 1.0596 -12.2708 22 7 8.6908 0.1151 -11.6493 23 14 8.5343 1.6049 -13.9809 24 1 9.7224 0.8249 -14.4110 25 1 7.4184 1.3734 -14.9329 26 1 8.8735 3.0506 -13.9580 27 6 6.2724 1.7267 -7.3777 28 6 4.1866 1.4492 -3.6032 29 6 3.5018 1.4433 -2.4096 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 4.4197 2.4700 1.5825 38 1 3.6491 0.9284 2.0277 39 1 5.1903 0.9285 1.1371 40 1 6.1306 1.4421 -0.2677 41 1 7.3625 1.4417 -2.3926 42 1 3.7977 2.5014 -5.6487 43 1 3.7484 0.7245 -5.8187 44 1 3.7380 2.8454 -7.9586 45 1 3.0272 1.1999 -7.9856 46 1 5.5658 2.9458 -9.6443 47 1 4.4984 1.7143 -10.3599 48 1 7.0398 0.5552 -9.9435 49 1 8.4224 -0.1678 -10.7611 50 1 7.1558 1.0929 -7.4533 51 1 6.5335 2.7674 -7.5701 52 1 3.6446 1.4541 -4.5374 53 1 2.4219 1.4436 -2.4073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714386085.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:49 Heat of formation + Delta-G solvation = 9.073650 kcal Electronic energy + Delta-G solvation = -29779.242558 eV Core-core repulsion = 25843.933814 eV Total energy + Delta-G solvation = -3935.308744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.66591 -40.34815 -38.91623 -37.51545 -36.79086 -34.54769 -34.00713 -32.16846 -31.99719 -31.15033 -29.83227 -28.41832 -27.25152 -26.10768 -25.11467 -24.08736 -23.43087 -22.58655 -21.74225 -21.43877 -20.89112 -19.38024 -18.49403 -18.13672 -17.64282 -17.04583 -16.47209 -16.35778 -16.04676 -15.90550 -15.72187 -15.65270 -15.28717 -15.07602 -14.82724 -14.77910 -14.47313 -14.29298 -14.10227 -13.85825 -13.62213 -13.46863 -13.31362 -13.13179 -12.99157 -12.79633 -12.76418 -12.65424 -12.56474 -12.20960 -12.06918 -11.98042 -11.86441 -11.69965 -11.62195 -11.44259 -11.17064 -11.02909 -10.91859 -10.82589 -10.01173 -9.76054 -9.12463 -8.41009 -8.29994 -5.34917 0.04102 0.46964 1.57671 1.68832 1.84237 1.84913 1.90736 2.11768 2.71835 2.93185 3.31452 3.40699 3.51650 3.69437 3.79006 3.83940 3.90906 4.03081 4.04591 4.10195 4.17937 4.26737 4.30486 4.38668 4.42936 4.46151 4.47748 4.54948 4.60717 4.64427 4.69148 4.71119 4.74834 4.77299 4.89149 4.91935 4.95901 4.98540 5.05068 5.10561 5.17683 5.20315 5.22290 5.25066 5.32836 5.34754 5.45718 5.52131 5.57818 5.74242 6.26921 6.43523 6.46431 6.47835 7.07737 7.08514 7.97983 8.09863 9.10655 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.001838 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.821712 B =15232.969691 C =16104.341759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.115 3.885 4 N -0.623 5.623 5 C 0.081 3.919 6 C 0.243 3.757 7 C -0.214 4.214 8 C -0.025 4.025 9 C -0.219 4.219 10 C 0.565 3.435 11 O -0.604 6.604 12 N -0.615 5.615 13 C 0.088 3.912 14 C -0.113 4.113 15 C -0.098 4.098 16 H 0.075 0.925 17 C 0.169 3.831 18 N -0.761 5.761 19 C -0.334 4.334 20 H 0.072 0.928 21 C -0.110 4.110 22 N -0.977 5.977 23 Si 1.131 2.869 24 H -0.295 1.295 25 H -0.273 1.273 26 H -0.278 1.278 27 C 0.119 3.881 28 C -0.065 4.065 29 C -0.207 4.207 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.143 0.857 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.024 0.976 47 H 0.037 0.963 48 H 0.357 0.643 49 H 0.241 0.759 50 H 0.038 0.962 51 H 0.059 0.941 52 H 0.179 0.821 53 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.418 4.117 30.580 38.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.007 4.007 4 N -0.330 5.330 5 C -0.061 4.061 6 C 0.136 3.864 7 C -0.236 4.236 8 C -0.045 4.045 9 C -0.224 4.224 10 C 0.358 3.642 11 O -0.487 6.487 12 N -0.347 5.347 13 C -0.033 4.033 14 C -0.151 4.151 15 C -0.117 4.117 16 H 0.094 0.906 17 C 0.043 3.957 18 N -0.405 5.405 19 C -0.466 4.466 20 H 0.090 0.910 21 C -0.301 4.301 22 N -0.625 5.625 23 Si 0.955 3.045 24 H -0.221 1.221 25 H -0.198 1.198 26 H -0.204 1.204 27 C -0.004 4.004 28 C -0.083 4.083 29 C -0.229 4.229 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.161 0.839 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.133 0.867 46 H 0.041 0.959 47 H 0.055 0.945 48 H 0.189 0.811 49 H 0.051 0.949 50 H 0.056 0.944 51 H 0.078 0.922 52 H 0.196 0.804 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.947 4.015 29.547 37.024 hybrid contribution 0.133 -0.270 1.266 1.302 sum -21.814 3.745 30.813 37.938 Atomic orbital electron populations 1.21690 0.94141 1.02204 1.02620 1.21919 0.96839 0.97091 1.02013 1.21756 0.77749 0.97010 1.04180 1.46705 1.05907 1.77281 1.03073 1.21872 0.97586 1.02157 0.84474 1.18223 0.91088 0.89975 0.87074 1.20727 0.92661 1.12045 0.98176 1.20978 0.99715 0.92540 0.91290 1.19445 0.94892 1.16814 0.91258 1.18607 0.86276 0.75338 0.83959 1.90736 1.16682 1.53464 1.87808 1.48450 1.08982 1.71714 1.05581 1.22864 0.78908 1.03586 0.97919 1.22767 0.96581 1.03693 0.92101 1.22422 0.95782 1.00394 0.93148 0.90648 1.20707 0.89262 0.94966 0.90780 1.42671 1.34494 1.45848 1.17501 1.20432 1.12807 1.18876 0.94449 0.91045 1.27341 0.95553 0.97829 1.09338 1.70992 1.43576 1.32934 1.14981 0.82601 0.75899 0.75416 0.70570 1.22119 1.19849 1.20379 1.22085 0.96490 1.00094 0.81761 1.22673 0.92168 0.92220 1.01288 1.20917 1.00939 1.10992 0.90041 0.91806 0.91946 0.92673 0.92829 0.92163 0.88944 0.89706 0.92329 0.89644 0.91212 0.83919 0.86809 0.87592 0.88172 0.88873 0.86671 0.95851 0.94534 0.81099 0.94878 0.94362 0.92239 0.80438 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 71.98 0.71 0.02 16 2 C -0.14 -0.95 6.26 30.59 0.19 -0.76 16 3 C 0.12 0.73 5.15 86.38 0.44 1.17 16 4 N -0.62 -6.56 2.99 -722.19 -2.16 -8.72 16 5 C 0.08 0.57 10.18 127.77 1.30 1.87 16 6 C 0.24 3.87 6.55 38.47 0.25 4.12 16 7 C -0.21 -4.10 9.18 22.36 0.21 -3.90 16 8 C -0.03 -0.65 9.58 22.50 0.22 -0.44 16 9 C -0.22 -5.94 5.88 -20.07 -0.12 -6.06 16 10 C 0.56 19.95 7.80 86.69 0.68 20.63 16 11 O -0.60 -27.39 16.59 -4.01 -0.07 -27.46 16 12 N -0.62 -18.89 3.33 -831.53 -2.77 -21.66 16 13 C 0.09 1.65 4.86 86.73 0.42 2.07 16 14 C -0.11 -2.20 6.42 31.78 0.20 -1.99 16 15 C -0.10 -3.09 3.05 -9.40 -0.03 -3.12 16 16 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 17 C 0.17 6.70 5.72 86.38 0.49 7.20 16 18 N -0.76 -40.08 5.55 -343.45 -1.90 -41.99 16 19 C -0.33 -19.48 9.99 84.04 0.84 -18.64 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.11 -6.65 5.50 84.86 0.47 -6.19 16 22 N -0.98 -64.32 13.70 21.65 0.30 -64.03 16 23 Si 1.13 53.58 29.92 68.60 2.05 55.64 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.12 4.34 6.35 86.85 0.55 4.89 16 28 C -0.07 -1.22 8.59 22.50 0.19 -1.03 16 29 C -0.21 -3.09 9.18 22.36 0.21 -2.89 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.05 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.32 8.07 -2.39 -0.02 0.30 16 36 H 0.08 0.47 6.17 -2.38 -0.01 0.45 16 37 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.08 0.31 8.07 -2.38 -0.02 0.29 16 39 H 0.07 0.53 6.17 -2.39 -0.01 0.52 16 40 H 0.14 2.14 6.11 -2.91 -0.02 2.12 16 41 H 0.11 3.25 7.66 -2.91 -0.02 3.23 16 42 H 0.11 1.45 6.73 -2.39 -0.02 1.43 16 43 H 0.10 1.46 6.74 -2.39 -0.02 1.44 16 44 H 0.09 1.63 8.04 -2.39 -0.02 1.61 16 45 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.02 0.94 7.96 -2.39 -0.02 0.92 16 47 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.36 20.01 6.50 -92.71 -0.60 19.41 16 49 H 0.24 16.01 6.77 -92.71 -0.63 15.38 16 50 H 0.04 1.70 7.99 -2.39 -0.02 1.68 16 51 H 0.06 2.26 7.91 -2.39 -0.02 2.24 16 52 H 0.18 2.45 2.72 -9.04 -0.02 2.43 16 53 H 0.15 1.42 6.11 -2.91 -0.02 1.40 16 Total: -1.00 -84.37 414.36 3.11 -81.25 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.43 Total: 30.00 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 7.23 Total: -3.04 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -6.53 Total: -136.39 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.07 Total: -27.46 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 2.05 Total: 55.64 kcal Total: -84.37 3.11 -81.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714386085.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.326 kcal (2) G-P(sol) polarization free energy of solvation -84.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds