Wall clock time and date at job start Wed Apr 1 2020 04:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47540 * 2 1 4 4 N 1.46503 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.36929 * 119.99737 * 263.93760 * 4 3 2 6 6 H 1.08010 * 119.99932 * 188.92356 * 5 4 3 7 7 C 1.38817 * 120.00571 * 8.91923 * 5 4 3 8 8 N 1.31615 * 119.99403 * 29.07779 * 7 5 4 9 9 Si 1.86801 * 120.00210 * 209.07833 * 7 5 4 10 10 H 1.48492 * 109.47230 * 94.98665 * 9 7 5 11 11 H 1.48501 * 109.46768 * 214.99066 * 9 7 5 12 12 H 1.48503 * 109.46988 * 334.98898 * 9 7 5 13 13 C 1.46496 * 119.99856 * 83.93185 * 4 3 2 14 14 C 1.52998 * 109.47439 * 270.00244 * 13 4 3 15 15 N 1.46504 * 109.47210 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99770 * 179.97438 * 15 14 13 17 17 O 1.21555 * 120.00430 * 0.02562 * 16 15 14 18 18 C 1.47866 * 119.99766 * 180.02562 * 16 15 14 19 19 C 1.39614 * 120.10789 * 359.97438 * 18 16 15 20 20 C 1.37983 * 120.00357 * 180.02562 * 19 18 16 21 21 C 1.38248 * 120.22604 * 0.02562 * 20 19 18 22 22 C 1.38985 * 120.22046 * 359.97438 * 21 20 19 23 23 N 1.39709 * 120.00291 * 180.02562 * 22 21 20 24 24 C 1.47910 * 110.99668 * 53.89008 * 23 22 21 25 25 C 1.53995 * 107.05450 * 214.15461 * 24 23 22 26 26 C 1.54594 * 105.14353 * 1.22715 * 25 24 23 27 27 C 1.48538 * 111.00337 * 296.49795 * 23 22 21 28 28 C 1.38677 * 119.99123 * 0.30185 * 22 21 20 29 29 H 1.08996 * 109.47715 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46837 * 300.00465 * 1 2 3 31 31 H 1.09003 * 109.46668 * 59.99745 * 1 2 3 32 32 H 1.08998 * 109.46837 * 239.99535 * 2 1 3 33 33 H 1.09003 * 109.46668 * 120.00254 * 2 1 3 34 34 H 1.09003 * 109.46969 * 59.99904 * 3 2 1 35 35 H 1.08998 * 109.47075 * 300.00190 * 3 2 1 36 36 H 0.97006 * 119.99896 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46683 * 150.00187 * 13 4 3 38 38 H 1.09000 * 109.47225 * 30.00272 * 13 4 3 39 39 H 1.08997 * 109.46869 * 59.99976 * 14 13 4 40 40 H 1.09000 * 109.46935 * 300.00205 * 14 13 4 41 41 H 0.97000 * 120.00042 * 359.97438 * 15 14 13 42 42 H 1.07996 * 119.99985 * 0.02562 * 19 18 16 43 43 H 1.07995 * 119.88350 * 180.02562 * 20 19 18 44 44 H 1.08003 * 119.88880 * 180.02562 * 21 20 19 45 45 H 1.09003 * 109.91537 * 94.80766 * 24 23 22 46 46 H 1.08993 * 109.91665 * 333.50702 * 24 23 22 47 47 H 1.08995 * 110.30804 * 120.14611 * 25 24 23 48 48 H 1.09009 * 110.30764 * 242.30868 * 25 24 23 49 49 H 1.08992 * 110.72668 * 140.31915 * 26 25 24 50 50 H 1.09008 * 110.72012 * 263.59731 * 26 25 24 51 51 H 1.08994 * 110.66655 * 41.27978 * 27 23 22 52 52 H 1.09001 * 110.66180 * 278.15595 * 27 23 22 53 53 H 1.07995 * 120.11141 * 179.70091 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5677 1.1801 6 1 5.2595 1.7126 1.1709 7 6 3.5073 1.5088 2.3878 8 7 2.4011 0.8024 2.4850 9 14 4.1596 2.4321 3.8749 10 1 3.4920 3.7552 3.9681 11 1 3.8805 1.6489 5.1053 12 1 5.6251 2.6261 3.7333 13 6 4.2381 1.3080 -1.2607 14 6 4.4931 -0.1731 -1.5471 15 7 5.2267 -0.3074 -2.8082 16 6 5.5642 -1.5297 -3.2645 17 8 5.2597 -2.5208 -2.6301 18 6 6.3051 -1.6652 -4.5370 19 6 6.6556 -0.5284 -5.2678 20 6 7.3465 -0.6573 -6.4552 21 6 7.6936 -1.9100 -6.9260 22 6 7.3494 -3.0479 -6.2060 23 7 7.7029 -4.3116 -6.6857 24 6 9.1544 -4.3872 -6.9604 25 6 9.3358 -5.3100 -8.1798 26 6 7.9036 -5.7213 -8.5917 27 6 7.0307 -4.5973 -7.9791 28 6 6.6501 -2.9292 -5.0144 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 1.9243 0.7614 3.3288 37 1 5.1905 1.8327 -1.1850 38 1 3.6494 1.7386 -2.0707 39 1 3.5407 -0.6977 -1.6227 40 1 5.0818 -0.6037 -0.7371 41 1 5.4694 0.4835 -3.3147 42 1 6.3860 0.4520 -4.9037 43 1 7.6170 0.2233 -7.0187 44 1 8.2347 -2.0046 -7.8558 45 1 9.6741 -4.8049 -6.0981 46 1 9.5419 -3.3937 -7.1856 47 1 9.8233 -4.7716 -8.9924 48 1 9.9178 -6.1899 -7.9051 49 1 7.8043 -5.7386 -9.6769 50 1 7.6422 -6.6892 -8.1639 51 1 7.0357 -3.7146 -8.6185 52 1 6.0120 -4.9481 -7.8139 53 1 6.3774 -3.8124 -4.4559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714657934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:08 Heat of formation + Delta-G solvation = 5.867115 kcal Electronic energy + Delta-G solvation = -29763.260351 eV Core-core repulsion = 25827.812562 eV Total energy + Delta-G solvation = -3935.447790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.55842 -40.53884 -38.55288 -38.19984 -35.99272 -33.80881 -33.75142 -33.10392 -32.19187 -30.01102 -29.84894 -28.99358 -27.35753 -25.77273 -24.58228 -23.47460 -22.53276 -22.44671 -21.86290 -21.77971 -20.93449 -19.12062 -18.72606 -17.44669 -17.28727 -16.98619 -16.82376 -16.59935 -16.48855 -15.71595 -15.66253 -15.42993 -15.09727 -15.04219 -14.72923 -14.63758 -14.42249 -14.19000 -14.05745 -13.77666 -13.47862 -13.15675 -13.07591 -12.99654 -12.82473 -12.77392 -12.65487 -12.41311 -12.37261 -12.25688 -12.17903 -12.09503 -11.82169 -11.70901 -11.57631 -11.46411 -11.16240 -11.02680 -10.34899 -10.22416 -9.93343 -9.79049 -9.53561 -8.87433 -7.81771 -5.11530 -0.24165 0.27589 1.48678 1.52249 1.59127 1.77129 2.06855 2.57072 2.76389 2.87318 3.25888 3.59538 3.67499 3.80463 3.86807 3.89974 4.04450 4.05438 4.15608 4.21608 4.30305 4.30422 4.40119 4.50215 4.54134 4.56705 4.63555 4.68864 4.72009 4.84064 4.86682 4.91670 4.94579 4.94935 5.03041 5.05691 5.10788 5.13657 5.24487 5.26320 5.27056 5.30604 5.38558 5.41277 5.42658 5.51792 5.65680 5.67413 5.78976 5.84211 6.20410 6.34022 6.34612 6.53587 7.18589 7.21928 7.91659 8.31612 9.19653 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.001901 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.573697 B =14725.632047 C =15139.394140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.127 4.127 3 C 0.178 3.822 4 N -0.605 5.605 5 C -0.266 4.266 6 H 0.073 0.927 7 C -0.045 4.045 8 N -0.905 5.905 9 Si 0.951 3.049 10 H -0.288 1.288 11 H -0.303 1.303 12 H -0.275 1.275 13 C 0.146 3.854 14 C 0.110 3.890 15 N -0.702 5.702 16 C 0.546 3.454 17 O -0.592 6.592 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.105 4.105 21 C -0.120 4.120 22 C 0.069 3.931 23 N -0.507 5.507 24 C 0.033 3.967 25 C -0.126 4.126 26 C -0.120 4.120 27 C 0.036 3.964 28 C -0.062 4.062 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.246 0.754 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.415 0.585 42 H 0.154 0.846 43 H 0.168 0.832 44 H 0.150 0.850 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.074 0.926 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.937 -4.048 -28.011 30.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.053 3.947 4 N -0.326 5.326 5 C -0.396 4.396 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.550 5.550 9 Si 0.780 3.220 10 H -0.216 1.216 11 H -0.231 1.231 12 H -0.200 1.200 13 C 0.018 3.982 14 C -0.016 4.016 15 N -0.355 5.355 16 C 0.334 3.666 17 O -0.473 6.473 18 C -0.141 4.141 19 C -0.102 4.102 20 C -0.123 4.123 21 C -0.140 4.140 22 C -0.025 4.025 23 N -0.229 5.229 24 C -0.093 4.093 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.090 4.090 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.254 0.746 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.167 0.833 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.112 0.888 50 H 0.088 0.912 51 H 0.080 0.920 52 H 0.093 0.907 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.471 -5.094 -26.992 29.768 hybrid contribution 0.273 0.634 1.022 1.234 sum 11.744 -4.460 -25.970 28.849 Atomic orbital electron populations 1.21530 0.96095 1.00358 1.00666 1.22086 0.95122 0.99757 0.99692 1.20715 0.81676 0.94546 0.97789 1.44446 1.02255 1.83628 1.02254 1.19469 0.92699 1.42862 0.84550 0.90931 1.25347 0.98767 1.00577 0.99448 1.70348 1.20921 1.38775 1.24999 0.85500 0.78061 0.78825 0.79589 1.21562 1.23061 1.19951 1.21097 0.97201 0.91289 0.88580 1.22225 0.94440 1.01289 0.83688 1.45813 1.57136 1.08135 1.24371 1.18876 0.78874 0.83221 0.85589 1.90760 1.56971 1.39140 1.60463 1.19781 1.03574 0.95420 0.95344 1.21645 0.96229 0.97654 0.94687 1.21376 0.97151 0.98368 0.95454 1.22078 0.99131 0.92614 1.00188 1.18920 0.99101 0.89946 0.94574 1.62312 1.07460 1.24888 1.28266 1.23084 0.86785 1.00297 0.99161 1.22418 0.97544 0.99717 0.96714 1.22500 0.93955 0.97957 1.01363 1.23419 0.98810 0.98910 0.87841 1.21025 0.95803 0.96380 0.94952 0.93697 0.93973 0.92594 0.95971 0.91964 0.92863 0.95112 0.94421 0.91694 0.90766 0.93802 0.95307 0.74640 0.82801 0.81453 0.83262 0.91089 0.92109 0.89516 0.90302 0.88770 0.91204 0.91996 0.90748 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.91 71.98 0.71 -4.22 16 2 C -0.13 -5.85 5.62 30.59 0.17 -5.68 16 3 C 0.18 8.28 4.92 86.38 0.42 8.71 16 4 N -0.61 -28.78 2.54 -702.01 -1.78 -30.56 16 5 C -0.27 -14.17 9.66 84.04 0.81 -13.36 16 6 H 0.07 3.81 7.96 -2.91 -0.02 3.79 16 7 C -0.05 -2.46 4.76 84.86 0.40 -2.06 16 8 N -0.90 -51.21 8.81 21.65 0.19 -51.02 16 9 Si 0.95 44.62 29.64 68.60 2.03 46.65 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 C 0.15 5.42 5.82 86.38 0.50 5.92 16 14 C 0.11 4.33 5.87 86.38 0.51 4.84 16 15 N -0.70 -21.39 5.51 -465.95 -2.57 -23.95 16 16 C 0.55 18.93 7.77 86.79 0.67 19.60 16 17 O -0.59 -26.84 16.34 -3.89 -0.06 -26.90 16 18 C -0.14 -3.64 5.87 -20.10 -0.12 -3.75 16 19 C -0.08 -1.44 9.54 22.54 0.21 -1.22 16 20 C -0.11 -1.33 10.02 22.21 0.22 -1.11 16 21 C -0.12 -1.73 7.90 22.45 0.18 -1.56 16 22 C 0.07 1.43 4.86 38.17 0.19 1.62 16 23 N -0.51 -9.69 5.27 -682.89 -3.60 -13.29 16 24 C 0.03 0.47 6.48 86.45 0.56 1.03 16 25 C -0.13 -1.17 6.93 31.47 0.22 -0.96 16 26 C -0.12 -1.21 7.06 31.80 0.22 -0.99 16 27 C 0.04 0.51 6.43 86.65 0.56 1.07 16 28 C -0.06 -1.69 9.52 22.67 0.22 -1.48 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.02 0.99 5.97 -2.39 -0.01 0.98 16 33 H 0.06 3.42 6.17 -2.39 -0.01 3.40 16 34 H 0.05 2.79 6.03 -2.39 -0.01 2.78 16 35 H 0.03 1.26 7.98 -2.39 -0.02 1.24 16 36 H 0.25 13.72 8.31 -92.70 -0.77 12.95 16 37 H 0.06 2.24 8.03 -2.39 -0.02 2.22 16 38 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 39 H 0.04 1.94 5.92 -2.39 -0.01 1.92 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.42 8.84 6.50 -92.71 -0.60 8.23 16 42 H 0.15 1.79 6.40 -2.91 -0.02 1.77 16 43 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.15 1.36 7.02 -2.91 -0.02 1.34 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 0.74 6.27 -2.39 -0.01 0.72 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 51 H 0.06 0.73 7.04 -2.39 -0.02 0.71 16 52 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.11 3.64 7.65 -2.91 -0.02 3.62 16 Total: -1.00 -72.04 413.07 1.18 -70.86 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.30 Total: 21.80 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.67 Total: 6.40 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -7.76 Total: -118.82 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.06 Total: -26.90 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -72.04 1.18 -70.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714657934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.725 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds