Wall clock time and date at job start Wed Apr 1 2020 04:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47414 * 2 1 4 4 N 1.46899 * 109.47086 * 120.00438 * 2 1 3 5 5 C 1.46908 * 110.99780 * 298.95158 * 4 2 1 6 6 C 1.46900 * 111.00213 * 174.99836 * 4 2 1 7 7 C 1.50700 * 109.46890 * 189.99869 * 6 4 2 8 8 O 1.21275 * 120.00392 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99521 * 179.97438 * 7 6 4 10 10 C 1.46496 * 119.99976 * 180.27363 * 9 7 6 11 11 C 1.53000 * 109.47706 * 179.72368 * 10 9 7 12 12 H 1.09000 * 109.76901 * 294.25799 * 11 10 9 13 13 C 1.52788 * 109.77936 * 173.44229 * 11 10 9 14 14 C 1.50601 * 110.83903 * 192.85900 * 13 11 10 15 15 C 1.38983 * 117.61265 * 199.56362 * 14 13 11 16 16 C 1.37906 * 120.57759 * 181.13585 * 15 14 13 17 17 C 1.38264 * 119.82655 * 359.95767 * 16 15 14 18 18 C 1.37951 * 119.72242 * 359.75162 * 17 16 15 19 19 C 1.37665 * 122.86168 * 20.22557 * 14 13 11 20 20 C 1.50816 * 122.34374 * 358.57028 * 19 14 13 21 21 N 1.46675 * 109.68810 * 11.45313 * 20 19 14 22 22 C 1.36943 * 121.33244 * 135.69836 * 21 20 19 23 23 H 1.07997 * 119.99880 * 208.06668 * 22 21 20 24 24 C 1.38814 * 119.99548 * 28.06362 * 22 21 20 25 25 N 1.31616 * 120.00388 * 10.84988 * 24 22 21 26 26 Si 1.86800 * 119.99654 * 190.84868 * 24 22 21 27 27 H 1.48503 * 109.47163 * 90.00279 * 26 24 22 28 28 H 1.48499 * 109.47184 * 210.00008 * 26 24 22 29 29 H 1.48501 * 109.47194 * 330.00281 * 26 24 22 30 30 H 1.09003 * 109.46819 * 299.99887 * 1 2 3 31 31 H 1.08996 * 109.46974 * 59.99851 * 1 2 3 32 32 H 1.09001 * 109.47299 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46819 * 240.00113 * 2 1 3 34 34 H 1.08996 * 109.47172 * 300.00027 * 3 2 1 35 35 H 1.09003 * 109.47035 * 60.00246 * 3 2 1 36 36 H 1.08997 * 109.46841 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.46947 * 296.04111 * 5 4 2 38 38 H 1.08998 * 109.47105 * 56.04558 * 5 4 2 39 39 H 1.09007 * 109.46692 * 176.04503 * 5 4 2 40 40 H 1.08999 * 109.47049 * 69.99684 * 6 4 2 41 41 H 1.09001 * 109.46644 * 309.99322 * 6 4 2 42 42 H 0.97002 * 120.00276 * 0.02562 * 9 7 6 43 43 H 1.09001 * 109.47288 * 299.72718 * 10 9 7 44 44 H 1.09008 * 109.47114 * 59.72816 * 10 9 7 45 45 H 1.08996 * 109.20612 * 313.20564 * 13 11 10 46 46 H 1.08997 * 109.20103 * 72.50614 * 13 11 10 47 47 H 1.07999 * 119.70841 * 1.11979 * 15 14 13 48 48 H 1.08003 * 120.08639 * 179.97438 * 16 15 14 49 49 H 1.08006 * 120.13531 * 179.75222 * 17 16 15 50 50 H 1.07998 * 119.74895 * 180.02562 * 18 17 16 51 51 H 1.08999 * 109.43490 * 251.38223 * 20 19 14 52 52 H 1.09000 * 109.39616 * 131.49693 * 20 19 14 53 53 H 0.96996 * 120.00336 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.5692 -0.0121 2.4210 6 6 3.4832 -0.8166 1.1751 7 6 3.9278 -1.7367 2.2827 8 8 3.1064 -2.2392 3.0200 9 7 5.2383 -2.0011 2.4539 10 6 5.6701 -2.9003 3.5268 11 6 7.1939 -3.0344 3.4977 12 1 7.5025 -3.5346 2.5797 13 6 7.6655 -3.8373 4.7090 14 6 9.1573 -3.7226 4.8800 15 6 9.7941 -4.6907 5.6474 16 6 11.1549 -4.6317 5.8632 17 6 11.8946 -3.6019 5.3119 18 6 11.2662 -2.6428 4.5448 19 6 9.8967 -2.7031 4.3240 20 6 9.2742 -1.6293 3.4674 21 7 7.8128 -1.7004 3.5703 22 6 7.0542 -0.5711 3.7271 23 1 6.1034 -0.6258 4.2364 24 6 7.5075 0.6438 3.2317 25 7 8.5516 0.6798 2.4312 26 14 6.6354 2.2276 3.7010 27 1 7.2491 2.7842 4.9334 28 1 6.7658 3.2108 2.5957 29 1 5.1980 1.9471 3.9469 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4423 0.0005 37 1 2.0054 0.9859 2.4628 38 1 0.4821 0.0664 2.4133 39 1 1.8861 -0.5840 3.2932 40 1 3.9335 0.1659 1.3162 41 1 3.7972 -1.2258 0.2148 42 1 5.8953 -1.5989 1.8644 43 1 5.3595 -2.4932 4.4891 44 1 5.2163 -3.8810 3.3836 45 1 7.1719 -3.4590 5.6042 46 1 7.4000 -4.8853 4.5699 47 1 9.2182 -5.4962 6.0785 48 1 11.6416 -5.3881 6.4612 49 1 12.9600 -3.5485 5.4811 50 1 11.8436 -1.8385 4.1136 51 1 9.5723 -1.7753 2.4291 52 1 9.6147 -0.6515 3.8083 53 1 8.8681 1.5286 2.0847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717245181.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:13 Heat of formation + Delta-G solvation = 6.690155 kcal Electronic energy + Delta-G solvation = -31579.238832 eV Core-core repulsion = 27643.826732 eV Total energy + Delta-G solvation = -3935.412100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.06518 -40.53438 -38.95516 -37.92969 -35.28162 -34.48234 -32.99579 -32.83295 -31.76718 -30.57306 -29.28020 -27.99174 -27.37101 -26.90736 -25.37304 -24.52219 -22.89120 -22.49195 -21.27911 -20.63087 -20.48736 -18.53255 -17.78018 -17.75394 -17.08069 -16.85463 -16.45475 -16.41459 -16.01390 -15.94506 -15.64759 -15.41171 -15.21717 -14.90263 -14.67378 -14.52130 -14.17400 -14.02799 -13.90029 -13.77425 -13.59944 -13.26357 -13.20547 -12.95747 -12.88756 -12.79064 -12.58276 -12.55837 -12.43014 -12.31396 -12.27248 -12.15278 -12.06421 -11.87315 -11.63613 -11.60049 -11.29324 -10.67933 -10.63214 -9.77139 -9.53214 -9.25908 -9.24334 -8.66906 -7.87534 -5.31395 0.59317 0.63300 1.37354 1.43917 1.47783 1.81150 2.28904 2.45882 2.98697 3.10308 3.30781 3.51727 3.86128 3.92432 3.95607 4.11475 4.16067 4.22373 4.24283 4.25647 4.32330 4.40661 4.42903 4.43691 4.52352 4.53443 4.60035 4.70644 4.72862 4.75296 4.81814 4.84300 4.93266 4.93573 4.98266 5.03249 5.06427 5.21073 5.23971 5.27873 5.30370 5.38362 5.44677 5.52387 5.65689 5.71040 5.74524 5.75537 5.95259 6.02349 6.16397 6.28316 6.35570 6.81950 7.14402 7.46146 7.80201 8.36416 9.19679 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.003166 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.062858 B = 8842.116588 C =10123.794378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 C -0.188 4.188 4 N -0.525 5.525 5 C 0.019 3.981 6 C 0.040 3.960 7 C 0.508 3.492 8 O -0.575 6.575 9 N -0.697 5.697 10 C 0.145 3.855 11 C 0.160 3.840 12 H 0.043 0.957 13 C -0.084 4.084 14 C -0.084 4.084 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.109 4.109 20 C 0.224 3.776 21 N -0.600 5.600 22 C -0.226 4.226 23 H 0.062 0.938 24 C -0.031 4.031 25 N -0.927 5.927 26 Si 0.938 3.062 27 H -0.296 1.296 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.411 0.589 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.140 0.860 48 H 0.148 0.852 49 H 0.142 0.858 50 H 0.115 0.885 51 H 0.015 0.985 52 H 0.059 0.941 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -6.190 -2.226 7.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 C -0.246 4.246 4 N -0.249 5.249 5 C -0.129 4.129 6 C -0.091 4.091 7 C 0.295 3.705 8 O -0.456 6.456 9 N -0.348 5.348 10 C 0.021 3.979 11 C 0.054 3.946 12 H 0.061 0.939 13 C -0.123 4.123 14 C -0.084 4.084 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.110 4.110 20 C 0.099 3.901 21 N -0.324 5.324 22 C -0.356 4.356 23 H 0.080 0.920 24 C -0.227 4.227 25 N -0.573 5.573 26 Si 0.769 3.231 27 H -0.224 1.224 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.247 0.753 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.113 0.887 47 H 0.158 0.842 48 H 0.166 0.834 49 H 0.160 0.840 50 H 0.133 0.867 51 H 0.033 0.967 52 H 0.078 0.922 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.050 -6.868 -1.791 8.711 hybrid contribution 0.702 2.496 0.059 2.594 sum -4.348 -4.372 -1.731 6.404 Atomic orbital electron populations 1.21822 0.92834 1.02436 1.02446 1.21907 0.96982 0.92317 0.92395 1.22491 1.00989 0.98175 1.02975 1.61972 1.08094 1.51707 1.03169 1.22506 1.01519 0.95836 0.93011 1.21932 0.90078 0.98249 0.98860 1.20781 0.82129 0.81912 0.85722 1.90576 1.53121 1.53787 1.48116 1.45941 1.07083 1.47849 1.33886 1.21146 0.93439 0.93043 0.90289 1.20835 0.90798 0.86743 0.96213 0.93898 1.20823 0.91617 1.00935 0.98961 1.19666 0.95803 0.94773 0.98187 1.21439 0.95507 0.98866 0.98724 1.21327 0.93957 0.99047 1.00566 1.21304 1.00755 0.94686 0.97763 1.21230 0.93940 1.00063 1.00379 1.20796 0.94560 0.97034 0.98648 1.19328 0.82871 0.94233 0.93681 1.44182 1.01334 1.01421 1.85416 1.19081 1.02176 0.86154 1.28161 0.92023 1.25412 0.99202 0.99959 0.98124 1.70066 1.27599 1.24775 1.34876 0.85713 0.78591 0.81857 0.76950 1.22363 1.21782 1.20449 0.92725 0.90277 0.92235 0.88997 0.90082 0.92944 0.93584 0.96229 0.89700 0.92263 0.92312 0.86301 0.75250 0.93702 0.90732 0.91473 0.88673 0.84222 0.83406 0.83981 0.86735 0.96699 0.92236 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.00 71.98 0.65 -1.88 16 2 C 0.07 1.59 2.96 44.92 0.13 1.72 16 3 C -0.19 -4.05 8.50 71.98 0.61 -3.44 16 4 N -0.53 -15.26 4.49 -901.58 -4.05 -19.30 16 5 C 0.02 0.58 8.40 127.69 1.07 1.65 16 6 C 0.04 1.23 4.89 85.56 0.42 1.65 16 7 C 0.51 18.91 7.55 87.66 0.66 19.58 16 8 O -0.58 -24.41 14.31 -3.01 -0.04 -24.46 16 9 N -0.70 -26.01 4.01 -463.06 -1.86 -27.87 16 10 C 0.15 5.26 4.45 86.38 0.38 5.65 16 11 C 0.16 5.93 3.02 44.78 0.14 6.07 16 12 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 13 C -0.08 -2.72 5.21 29.75 0.15 -2.56 16 14 C -0.08 -2.88 5.76 -19.85 -0.11 -2.99 16 15 C -0.13 -3.53 9.59 22.37 0.21 -3.31 16 16 C -0.13 -3.28 10.04 22.20 0.22 -3.06 16 17 C -0.13 -3.48 10.05 22.21 0.22 -3.25 16 18 C -0.14 -4.70 9.62 22.35 0.22 -4.48 16 19 C -0.11 -4.24 5.82 -19.82 -0.12 -4.35 16 20 C 0.22 10.30 4.80 85.64 0.41 10.71 16 21 N -0.60 -27.01 2.85 -680.31 -1.94 -28.95 16 22 C -0.23 -11.08 6.96 84.03 0.58 -10.49 16 23 H 0.06 3.15 6.18 -2.91 -0.02 3.13 16 24 C -0.03 -1.57 5.08 84.86 0.43 -1.14 16 25 N -0.93 -49.71 11.06 21.65 0.24 -49.47 16 26 Si 0.94 43.21 29.57 68.60 2.03 45.24 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 29 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 30 H 0.05 1.02 6.34 -2.39 -0.02 1.01 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.85 8.03 -2.39 -0.02 1.84 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.20 6.47 -2.39 -0.02 1.18 16 36 H 0.05 1.11 6.75 -2.39 -0.02 1.10 16 37 H 0.02 0.59 6.51 -2.39 -0.02 0.57 16 38 H 0.08 2.18 6.13 -2.39 -0.01 2.17 16 39 H 0.06 2.16 5.88 -2.38 -0.01 2.14 16 40 H 0.06 1.92 6.94 -2.39 -0.02 1.91 16 41 H 0.12 3.12 8.00 -2.39 -0.02 3.11 16 42 H 0.41 16.12 7.34 -92.71 -0.68 15.44 16 43 H 0.04 1.80 7.31 -2.39 -0.02 1.79 16 44 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 46 H 0.09 2.45 8.11 -2.39 -0.02 2.43 16 47 H 0.14 3.05 8.05 -2.91 -0.02 3.02 16 48 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 49 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 50 H 0.11 3.82 8.05 -2.91 -0.02 3.80 16 51 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.06 3.12 6.46 -2.39 -0.02 3.10 16 53 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -61.28 403.17 0.90 -60.38 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: 0.22 Total: 38.38 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.29 Total: 6.04 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -7.61 Total: -125.59 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -61.28 0.90 -60.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717245181.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.071 kcal (2) G-P(sol) polarization free energy of solvation -61.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds