Wall clock time and date at job start Wed Apr 1 2020 03:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46977 * 119.99677 * 2 1 3 5 5 H 1.08999 * 109.47523 * 299.99908 * 4 2 1 6 6 C 1.52998 * 109.47263 * 60.00253 * 4 2 1 7 7 C 1.53002 * 109.47268 * 184.99811 * 6 4 2 8 8 N 1.46499 * 109.47315 * 179.97438 * 7 6 4 9 9 C 1.34766 * 120.00198 * 179.97438 * 8 7 6 10 10 O 1.21285 * 120.00112 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00166 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.25036 * 60.52541 * 11 9 8 13 13 C 1.52724 * 109.25530 * 180.02562 * 11 9 8 14 14 C 1.53326 * 108.43396 * 171.58081 * 13 11 9 15 15 C 1.52778 * 108.35445 * 290.13831 * 14 13 11 16 16 C 1.50495 * 110.55506 * 50.83650 * 15 14 13 17 17 C 1.39190 * 117.96781 * 162.70649 * 16 15 14 18 18 C 1.38411 * 118.86538 * 180.02562 * 17 16 15 19 19 C 1.38237 * 118.84097 * 359.35719 * 18 17 16 20 20 N 1.31515 * 120.61283 * 0.65520 * 19 18 17 21 21 C 1.32702 * 122.39671 * 359.78230 * 20 19 18 22 22 N 1.46498 * 109.46701 * 180.02562 * 4 2 1 23 23 C 1.36932 * 120.00468 * 85.00251 * 22 4 2 24 24 H 1.08005 * 120.00021 * 359.97438 * 23 22 4 25 25 C 1.38811 * 120.00357 * 179.97438 * 23 22 4 26 26 N 1.31621 * 119.99771 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00430 * 179.97438 * 25 23 22 28 28 H 1.48511 * 109.46920 * 0.02562 * 27 25 23 29 29 H 1.48494 * 109.47295 * 120.00100 * 27 25 23 30 30 H 1.48496 * 109.47476 * 240.00561 * 27 25 23 31 31 H 1.09009 * 109.47214 * 300.00514 * 1 2 3 32 32 H 1.08998 * 109.47317 * 60.00159 * 1 2 3 33 33 H 1.08999 * 109.47284 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46919 * 239.99955 * 2 1 3 35 35 H 1.08995 * 109.46567 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46660 * 299.99654 * 3 2 1 37 37 H 1.08999 * 109.47476 * 59.99709 * 3 2 1 38 38 H 1.08994 * 109.47099 * 64.99504 * 6 4 2 39 39 H 1.09003 * 109.46782 * 304.99987 * 6 4 2 40 40 H 1.09004 * 109.46820 * 59.99852 * 7 6 4 41 41 H 1.09001 * 109.46661 * 300.00046 * 7 6 4 42 42 H 0.97005 * 119.99410 * 0.02562 * 8 7 6 43 43 H 1.08997 * 109.64319 * 51.89283 * 13 11 9 44 44 H 1.08999 * 109.81636 * 291.36318 * 13 11 9 45 45 H 1.08998 * 109.68835 * 170.43311 * 14 13 11 46 46 H 1.08999 * 109.68833 * 49.85298 * 14 13 11 47 47 H 1.08999 * 109.26110 * 290.55585 * 15 14 13 48 48 H 1.08999 * 109.25548 * 171.10852 * 15 14 13 49 49 H 1.08002 * 120.56491 * 359.71943 * 17 16 15 50 50 H 1.07996 * 120.57668 * 179.60140 * 18 17 16 51 51 H 1.07997 * 119.69772 * 180.35443 * 19 18 17 52 52 H 0.97011 * 119.99984 * 264.99748 * 22 4 2 53 53 H 0.97001 * 119.99677 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 1.9348 -2.8477 2.5567 8 7 1.4460 -4.2287 2.5571 9 6 1.6868 -5.0285 3.6147 10 8 2.3078 -4.6048 4.5665 11 6 1.1844 -6.4494 3.6148 12 1 1.6281 -6.9874 2.7771 13 6 1.5910 -7.1272 4.9216 14 6 0.8962 -8.4920 4.9964 15 6 -0.5992 -8.2597 5.2064 16 6 -1.1298 -7.2832 4.1916 17 6 -2.5066 -7.2311 3.9935 18 6 -3.0147 -6.3401 3.0642 19 6 -2.1380 -5.5234 2.3748 20 7 -0.8426 -5.6002 2.5882 21 6 -0.3152 -6.4467 3.4635 22 7 3.5050 -0.7206 1.2495 23 6 4.1892 0.3543 1.7509 24 1 3.6489 1.2020 2.1459 25 6 5.5773 0.3546 1.7517 26 7 6.2358 -0.6782 1.2699 27 14 6.5108 1.8212 2.4350 28 1 5.5453 2.8441 2.9116 29 1 7.3640 1.3809 3.5677 30 1 7.3649 2.4046 1.3695 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.9646 -2.7027 0.4076 39 1 0.4437 -2.1650 1.1597 40 1 1.5001 -2.3086 3.3985 41 1 3.0211 -2.8463 2.6462 42 1 0.9497 -4.5676 1.7957 43 1 1.2809 -6.5113 5.7657 44 1 2.6720 -7.2646 4.9459 45 1 1.2996 -9.0641 5.8319 46 1 1.0561 -9.0369 4.0661 47 1 -0.7642 -7.8627 6.2080 48 1 -1.1280 -9.2073 5.1042 49 1 -3.1666 -7.8785 4.5518 50 1 -4.0779 -6.2812 2.8838 51 1 -2.5200 -4.8190 1.6507 52 1 3.9904 -1.4818 0.8945 53 1 7.2059 -0.6778 1.2700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717720888.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:51 Heat of formation + Delta-G solvation = -35.947461 kcal Electronic energy + Delta-G solvation = -30858.136566 eV Core-core repulsion = 26920.875560 eV Total energy + Delta-G solvation = -3937.261006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.98193 -40.35308 -38.98513 -37.36768 -35.90829 -34.90853 -34.40115 -32.63163 -31.51726 -31.27352 -30.62755 -27.71878 -26.99291 -25.59036 -24.74647 -24.20526 -23.78784 -22.40505 -21.62930 -20.73037 -20.57283 -19.12960 -18.26831 -17.64664 -17.50664 -16.93144 -16.79891 -16.48634 -16.10046 -15.67915 -15.35504 -15.25162 -15.18794 -14.97020 -14.73119 -14.69261 -14.37403 -14.25301 -13.81307 -13.64513 -13.50579 -13.31645 -13.16502 -12.91346 -12.89613 -12.87881 -12.66455 -12.45964 -12.19900 -12.09587 -11.97291 -11.92002 -11.85787 -11.70918 -11.50853 -11.40201 -11.20004 -11.00485 -10.77581 -10.55014 -10.33037 -9.95854 -9.68188 -8.90432 -7.88285 -5.13028 0.14565 0.36239 1.44790 1.46409 1.54792 1.63470 2.28107 2.58768 2.85031 3.17620 3.44757 3.48928 3.80129 3.84845 3.88246 3.92113 3.95711 4.12713 4.16509 4.18535 4.27305 4.29073 4.36633 4.41726 4.44876 4.53933 4.55636 4.68602 4.69753 4.79969 4.81678 4.84742 4.89820 4.97230 4.97619 5.04546 5.11902 5.15973 5.19909 5.23525 5.26413 5.29373 5.37266 5.38905 5.40576 5.44922 5.57851 5.57962 5.70993 5.80403 5.80854 6.34299 6.67726 7.01367 7.35855 7.40491 8.17365 8.39763 9.35767 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.013212 B = 0.002714 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.794730 B =10314.017741 C =12069.069381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.181 3.819 5 H 0.036 0.964 6 C -0.115 4.115 7 C 0.135 3.865 8 N -0.697 5.697 9 C 0.512 3.488 10 O -0.594 6.594 11 C -0.048 4.048 12 H 0.125 0.875 13 C -0.101 4.101 14 C -0.113 4.113 15 C -0.078 4.078 16 C -0.124 4.124 17 C -0.079 4.079 18 C -0.166 4.166 19 C 0.090 3.910 20 N -0.510 5.510 21 C 0.111 3.889 22 N -0.730 5.730 23 C -0.210 4.210 24 H 0.074 0.926 25 C -0.081 4.081 26 N -0.971 5.971 27 Si 0.958 3.042 28 H -0.267 1.267 29 H -0.301 1.301 30 H -0.295 1.295 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.418 0.582 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.164 0.836 50 H 0.166 0.834 51 H 0.177 0.823 52 H 0.371 0.629 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.541 -18.618 2.191 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.195 4.195 4 C 0.072 3.928 5 H 0.054 0.946 6 C -0.153 4.153 7 C 0.011 3.989 8 N -0.349 5.349 9 C 0.298 3.702 10 O -0.476 6.476 11 C -0.070 4.070 12 H 0.142 0.858 13 C -0.139 4.139 14 C -0.150 4.150 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.185 4.185 19 C -0.069 4.069 20 N -0.219 5.219 21 C -0.024 4.024 22 N -0.370 5.370 23 C -0.342 4.342 24 H 0.092 0.908 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.789 3.211 28 H -0.191 1.191 29 H -0.229 1.229 30 H -0.222 1.222 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.258 0.742 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.123 0.877 49 H 0.182 0.818 50 H 0.183 0.817 51 H 0.194 0.806 52 H 0.203 0.797 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.538 -17.576 2.462 29.479 hybrid contribution 0.803 0.371 0.314 0.939 sum -22.735 -17.205 2.776 28.646 Atomic orbital electron populations 1.21844 0.93682 1.02319 1.01691 1.21625 0.96080 0.96240 0.98652 1.21762 1.01566 0.96234 0.99940 1.20421 0.83226 0.93452 0.95691 0.94616 1.21945 1.02338 0.95573 0.95491 1.21044 0.97886 0.81656 0.98324 1.46042 1.55886 1.12105 1.20857 1.20937 0.78623 0.88581 0.82010 1.90688 1.43280 1.77034 1.36578 1.20180 0.91633 0.92390 1.02773 0.85771 1.21401 1.01236 0.96980 0.94282 1.21593 0.94395 0.95140 1.03893 1.20540 0.96165 0.98012 0.96781 1.20679 0.94546 0.98669 0.98685 1.21994 0.94086 0.97812 0.96637 1.22496 1.02791 0.96375 0.96851 1.23120 0.87756 0.97786 0.98283 1.67233 1.16723 1.20377 1.17615 1.20503 0.94191 0.93590 0.94112 1.42623 1.01124 1.19844 1.73363 1.19519 0.88976 0.96382 1.29325 0.90806 1.25395 0.97615 1.00207 1.04020 1.69813 1.06186 1.31807 1.54479 0.85277 0.78858 0.79885 0.77124 1.19105 1.22905 1.22239 0.93014 0.92156 0.91220 0.92784 0.93538 0.92927 0.94131 0.91359 0.88081 0.94130 0.94626 0.74249 0.92562 0.91001 0.88887 0.90443 0.89916 0.87733 0.81817 0.81678 0.80605 0.79749 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.85 71.98 0.64 -2.78 16 2 C -0.10 -3.53 2.69 -10.79 -0.03 -3.56 16 3 C -0.14 -5.06 8.26 71.98 0.59 -4.46 16 4 C 0.18 7.01 2.02 44.99 0.09 7.10 16 5 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 6 C -0.12 -3.70 4.65 30.59 0.14 -3.56 16 7 C 0.14 5.10 5.56 86.38 0.48 5.58 16 8 N -0.70 -22.28 4.96 -463.06 -2.29 -24.58 16 9 C 0.51 17.53 7.06 87.66 0.62 18.15 16 10 O -0.59 -26.08 15.83 -3.05 -0.05 -26.13 16 11 C -0.05 -1.17 2.71 -12.37 -0.03 -1.20 16 12 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 13 C -0.10 -2.18 4.65 30.61 0.14 -2.03 16 14 C -0.11 -1.45 5.98 30.63 0.18 -1.27 16 15 C -0.08 -0.87 5.68 29.71 0.17 -0.70 16 16 C -0.12 -1.97 5.74 -19.85 -0.11 -2.09 16 17 C -0.08 -0.91 9.75 22.54 0.22 -0.69 16 18 C -0.17 -1.85 10.12 22.31 0.23 -1.62 16 19 C 0.09 1.39 11.19 84.74 0.95 2.34 16 20 N -0.51 -10.94 7.54 -184.01 -1.39 -12.33 16 21 C 0.11 2.38 6.20 42.28 0.26 2.64 16 22 N -0.73 -36.59 4.45 -322.95 -1.44 -38.03 16 23 C -0.21 -11.67 7.57 84.03 0.64 -11.04 16 24 H 0.07 4.01 7.39 -2.91 -0.02 3.98 16 25 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 26 N -0.97 -61.33 13.06 21.65 0.28 -61.04 16 27 Si 0.96 48.19 29.55 68.60 2.03 50.22 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 30 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.47 6.32 -2.39 -0.02 1.46 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.10 2.58 6.17 -2.39 -0.01 2.57 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.04 1.67 7.75 -2.39 -0.02 1.66 16 42 H 0.42 11.20 6.80 -92.70 -0.63 10.57 16 43 H 0.06 1.45 7.79 -2.39 -0.02 1.43 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.87 8.10 -2.39 -0.02 0.86 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.10 0.63 8.13 -2.39 -0.02 0.61 16 49 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 50 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 51 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 52 H 0.37 20.31 7.80 -92.70 -0.72 19.59 16 53 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -77.08 413.29 2.33 -74.75 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.45 Total: 40.62 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.64 Total: -3.48 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -4.84 Total: -135.98 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -77.08 2.33 -74.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717720888.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.799 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds