Wall clock time and date at job start Wed Apr 1 2020 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46857 * 2 1 4 4 N 1.46501 * 109.46936 * 120.00227 * 2 1 3 5 5 C 1.46499 * 119.99537 * 116.08491 * 4 2 1 6 6 C 1.52997 * 109.47092 * 93.62854 * 5 4 2 7 7 N 1.46498 * 109.47162 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00088 * 89.99848 * 7 6 5 9 9 C 1.36941 * 120.00357 * 269.99695 * 7 6 5 10 10 H 1.07991 * 119.99691 * 334.05111 * 9 7 6 11 11 C 1.38807 * 120.00166 * 154.04535 * 9 7 6 12 12 N 1.31623 * 120.00093 * 356.17749 * 11 9 7 13 13 Si 1.86791 * 120.00047 * 176.17343 * 11 9 7 14 14 H 1.48503 * 109.47087 * 60.00143 * 13 11 9 15 15 H 1.48508 * 109.47315 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47461 * 300.00239 * 13 11 9 17 17 C 1.34778 * 120.00021 * 296.07675 * 4 2 1 18 18 O 1.21282 * 120.00054 * 3.29844 * 17 4 2 19 19 C 1.50697 * 119.99753 * 183.29484 * 17 4 2 20 20 H 1.09002 * 109.25257 * 40.68239 * 19 17 4 21 21 C 1.52716 * 109.25192 * 160.11810 * 19 17 4 22 22 C 1.53334 * 108.45023 * 171.53875 * 21 19 17 23 23 C 1.52765 * 108.34840 * 290.15610 * 22 21 19 24 24 C 1.50495 * 110.54898 * 50.90717 * 23 22 21 25 25 C 1.39177 * 117.97572 * 162.67522 * 24 23 22 26 26 C 1.38409 * 118.86875 * 179.44761 * 25 24 23 27 27 C 1.38240 * 118.84098 * 359.97438 * 26 25 24 28 28 N 1.31517 * 120.60977 * 0.14289 * 27 26 25 29 29 C 1.32692 * 122.39985 * 359.97039 * 28 27 26 30 30 H 1.09002 * 109.46785 * 304.57343 * 1 2 3 31 31 H 1.09000 * 109.47482 * 64.57131 * 1 2 3 32 32 H 1.08995 * 109.47229 * 184.57345 * 1 2 3 33 33 H 1.08998 * 109.46700 * 240.00637 * 2 1 3 34 34 H 1.09006 * 109.46811 * 183.10576 * 3 2 1 35 35 H 1.08998 * 109.47482 * 303.10721 * 3 2 1 36 36 H 1.09007 * 109.47254 * 63.11266 * 3 2 1 37 37 H 1.08993 * 109.47465 * 333.62522 * 5 4 2 38 38 H 1.09002 * 109.46567 * 213.62317 * 5 4 2 39 39 H 1.08996 * 109.47700 * 59.99332 * 6 5 4 40 40 H 1.09002 * 109.46976 * 299.99212 * 6 5 4 41 41 H 1.09008 * 109.47202 * 269.63775 * 8 7 6 42 42 H 1.09000 * 109.47365 * 149.64238 * 8 7 6 43 43 H 1.09003 * 109.46886 * 29.63652 * 8 7 6 44 44 H 0.97000 * 120.00241 * 179.97438 * 12 11 9 45 45 H 1.08993 * 109.64000 * 291.22434 * 21 19 17 46 46 H 1.08997 * 109.64235 * 51.85178 * 21 19 17 47 47 H 1.09004 * 109.68696 * 170.44452 * 22 21 19 48 48 H 1.08999 * 109.71877 * 49.89150 * 22 21 19 49 49 H 1.09003 * 109.26730 * 290.62408 * 23 22 21 50 50 H 1.09004 * 109.26019 * 171.17879 * 23 22 21 51 51 H 1.08007 * 120.56660 * 359.46473 * 25 24 23 52 52 H 1.08000 * 120.58203 * 180.02562 * 26 25 24 53 53 H 1.07998 * 119.69312 * 180.12970 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7884 -1.9298 1.0633 6 6 4.2829 -1.6027 1.0512 7 7 5.0531 -2.8418 0.9190 8 6 5.4031 -3.3484 -0.4103 9 6 5.4458 -3.5267 2.0379 10 1 5.5773 -3.0030 2.9731 11 6 5.6746 -4.8941 1.9701 12 7 5.4420 -5.5456 0.8503 13 14 6.3128 -5.8097 3.4679 14 1 5.3473 -5.6627 4.5865 15 1 6.4730 -7.2487 3.1374 16 1 7.6263 -5.2457 3.8704 17 6 1.7592 -0.1860 2.4187 18 8 1.0715 0.8066 2.5317 19 6 2.3239 -0.8550 3.6452 20 1 3.3487 -1.1675 3.4445 21 6 2.3189 0.1362 4.8070 22 6 2.6937 -0.6168 6.0890 23 6 1.5390 -1.5475 6.4551 24 6 1.1394 -2.3849 5.2703 25 6 0.3752 -3.5244 5.5040 26 6 -0.0123 -4.3018 4.4265 27 6 0.3727 -3.9188 3.1552 28 7 1.0971 -2.8364 2.9724 29 6 1.4907 -2.0661 3.9786 30 1 -0.3633 0.5832 0.8462 31 1 -0.3634 0.4413 -0.9281 32 1 -0.3633 -1.0243 0.0819 33 1 1.8933 -0.5137 -0.8900 34 1 3.1286 1.4430 -0.0557 35 1 1.6319 1.9722 -0.8608 36 1 1.7229 1.9400 0.9166 37 1 2.5179 -2.4277 0.1322 38 1 2.5671 -2.5870 1.9044 39 1 4.5535 -1.1047 1.9823 40 1 4.5042 -0.9455 0.2102 41 1 4.6192 -4.0196 -0.7615 42 1 6.3475 -3.8900 -0.3557 43 1 5.5031 -2.5126 -1.1029 44 1 5.6023 -6.5011 0.8027 45 1 3.0475 0.9247 4.6189 46 1 1.3247 0.5699 4.9142 47 1 2.8620 0.0951 6.8971 48 1 3.5979 -1.2019 5.9209 49 1 0.6855 -0.9517 6.7786 50 1 1.8491 -2.2020 7.2698 51 1 0.0893 -3.7973 6.5092 52 1 -0.6060 -5.1915 4.5761 53 1 0.0761 -4.5141 2.3043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717949737.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:48 Heat of formation + Delta-G solvation = 9.483183 kcal Electronic energy + Delta-G solvation = -33208.230939 eV Core-core repulsion = 29272.939953 eV Total energy + Delta-G solvation = -3935.290985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.16345 -40.61319 -38.02668 -37.44753 -36.51842 -34.88785 -33.65261 -32.67658 -31.39811 -30.76950 -29.24640 -28.06437 -27.88464 -25.89899 -24.95108 -24.38959 -24.20607 -22.70783 -22.22542 -20.73254 -19.72532 -18.77824 -18.09169 -17.60105 -17.48894 -16.94912 -16.81610 -16.43279 -15.76957 -15.50432 -15.35205 -15.22755 -14.99848 -14.83591 -14.69318 -14.58347 -14.18754 -14.13218 -13.93963 -13.76037 -13.62681 -13.34804 -13.02755 -12.98421 -12.90612 -12.82928 -12.73739 -12.65704 -12.44897 -12.15049 -12.13083 -12.07631 -11.99286 -11.95564 -11.78793 -11.55486 -11.40375 -10.62079 -10.56547 -10.49630 -10.10497 -9.64599 -9.54984 -8.65736 -7.82017 -5.30957 0.16678 0.36897 1.44411 1.45507 1.51789 1.69035 2.13690 2.51011 2.83201 3.22485 3.34318 3.49031 3.65477 3.82146 3.90828 3.91479 4.02490 4.09954 4.17392 4.18875 4.20814 4.30516 4.36585 4.40965 4.42867 4.58400 4.64333 4.69323 4.72464 4.77870 4.80841 4.84720 4.88847 4.91539 4.91677 4.97676 4.98954 5.07621 5.09691 5.18050 5.25908 5.30315 5.36149 5.38208 5.38596 5.42175 5.53512 5.65112 5.74707 5.83732 5.91536 6.35138 6.59178 7.05971 7.18119 7.31517 7.87242 8.33199 9.22163 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008100 B = 0.005759 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.063758 B = 4861.005449 C = 6628.588977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.584 5.584 5 C 0.090 3.910 6 C 0.142 3.858 7 N -0.611 5.611 8 C 0.181 3.819 9 C -0.255 4.255 10 H 0.065 0.935 11 C -0.043 4.043 12 N -0.934 5.934 13 Si 0.958 3.042 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.277 1.277 17 C 0.537 3.463 18 O -0.570 6.570 19 C -0.061 4.061 20 H 0.096 0.904 21 C -0.095 4.095 22 C -0.118 4.118 23 C -0.074 4.074 24 C -0.129 4.129 25 C -0.081 4.081 26 C -0.168 4.168 27 C 0.079 3.921 28 N -0.497 5.497 29 C 0.116 3.884 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.046 0.954 41 H -0.001 1.001 42 H 0.028 0.972 43 H 0.021 0.979 44 H 0.247 0.753 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.102 0.898 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.168 0.832 52 H 0.164 0.836 53 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 8.236 8.231 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 C -0.217 4.217 4 N -0.315 5.315 5 C -0.035 4.035 6 C 0.015 3.985 7 N -0.335 5.335 8 C 0.036 3.964 9 C -0.386 4.386 10 H 0.082 0.918 11 C -0.238 4.238 12 N -0.581 5.581 13 Si 0.787 3.213 14 H -0.205 1.205 15 H -0.220 1.220 16 H -0.203 1.203 17 C 0.325 3.675 18 O -0.451 6.451 19 C -0.083 4.083 20 H 0.114 0.886 21 C -0.134 4.134 22 C -0.155 4.155 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.107 4.107 26 C -0.188 4.188 27 C -0.080 4.080 28 N -0.206 5.206 29 C -0.019 4.019 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.186 0.814 52 H 0.181 0.819 53 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.968 8.807 7.355 15.873 hybrid contribution 0.264 -1.495 0.761 1.698 sum -10.704 7.312 8.116 15.294 Atomic orbital electron populations 1.22027 0.94915 1.01188 1.02729 1.21188 0.94671 0.93807 0.87191 1.22116 1.00721 0.95434 1.03429 1.47996 1.52944 1.25135 1.05387 1.22763 0.91327 0.85589 1.03855 1.21312 0.90356 0.87967 0.98873 1.44013 1.60750 1.25822 1.02881 1.20550 0.97985 0.93747 0.84144 1.19332 1.39219 0.89822 0.90191 0.91776 1.25743 1.01624 0.97183 0.99240 1.70195 1.53762 1.07651 1.26491 0.85481 0.78503 0.77470 0.79867 1.20530 1.21993 1.20278 1.20256 0.79422 0.83181 0.84635 1.90534 1.40200 1.27614 1.86761 1.20287 0.99258 0.93519 0.95213 0.88591 1.21412 1.03130 0.96261 0.92560 1.21609 0.97935 0.98741 0.97246 1.20518 0.99252 0.97321 0.93995 1.20779 0.99039 0.97892 0.95393 1.21972 0.94853 0.92739 1.01096 1.22416 1.01521 1.01788 0.93062 1.22978 0.93702 0.93094 0.98232 1.67408 1.10932 1.06466 1.35832 1.20631 0.96818 0.94696 0.89707 0.92906 0.89961 0.94042 0.89384 0.93050 0.89979 0.92023 0.93203 0.87331 0.94271 0.93600 0.98283 0.95333 0.96091 0.94338 0.90475 0.90915 0.87995 0.92277 0.88749 0.88429 0.81437 0.81883 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.11 71.98 0.66 -3.62 16 2 C 0.13 4.02 3.27 44.99 0.15 4.17 16 3 C -0.16 -4.33 9.11 71.98 0.66 -3.67 16 4 N -0.58 -20.24 2.36 -797.85 -1.88 -22.12 16 5 C 0.09 3.55 4.86 86.38 0.42 3.97 16 6 C 0.14 5.92 5.85 86.38 0.50 6.42 16 7 N -0.61 -30.56 2.92 -726.94 -2.13 -32.68 16 8 C 0.18 8.98 9.00 127.77 1.15 10.13 16 9 C -0.26 -13.83 9.65 84.03 0.81 -13.02 16 10 H 0.06 3.40 7.83 -2.92 -0.02 3.38 16 11 C -0.04 -2.35 5.24 84.86 0.44 -1.91 16 12 N -0.93 -54.37 10.46 21.65 0.23 -54.15 16 13 Si 0.96 44.57 29.55 68.60 2.03 46.60 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 C 0.54 19.02 5.88 87.66 0.52 19.54 16 18 O -0.57 -21.47 12.08 -3.04 -0.04 -21.50 16 19 C -0.06 -2.01 1.94 -12.37 -0.02 -2.04 16 20 H 0.10 3.52 5.70 -2.39 -0.01 3.51 16 21 C -0.10 -2.50 4.87 30.61 0.15 -2.35 16 22 C -0.12 -2.44 5.98 30.63 0.18 -2.26 16 23 C -0.07 -1.42 5.68 29.71 0.17 -1.25 16 24 C -0.13 -3.44 5.74 -19.85 -0.11 -3.56 16 25 C -0.08 -1.83 9.75 22.54 0.22 -1.61 16 26 C -0.17 -4.04 10.12 22.31 0.23 -3.82 16 27 C 0.08 2.41 11.19 84.74 0.95 3.36 16 28 N -0.50 -17.82 6.17 -184.00 -1.14 -18.96 16 29 C 0.12 3.87 5.99 42.29 0.25 4.12 16 30 H 0.05 1.71 6.47 -2.39 -0.02 1.69 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 2.51 7.78 -2.39 -0.02 2.49 16 34 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.93 5.91 -2.38 -0.01 1.91 16 37 H 0.05 2.07 7.88 -2.39 -0.02 2.05 16 38 H 0.11 4.73 3.93 -2.39 -0.01 4.72 16 39 H 0.04 1.63 6.41 -2.39 -0.02 1.61 16 40 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 41 H 0.00 -0.06 7.61 -2.38 -0.02 -0.08 16 42 H 0.03 1.53 6.96 -2.39 -0.02 1.51 16 43 H 0.02 0.89 7.89 -2.39 -0.02 0.88 16 44 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 2.00 7.53 -2.39 -0.02 1.98 16 47 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 49 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 51 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 52 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 53 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -67.99 403.62 5.27 -62.72 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.89 Total: 27.48 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 7.32 Total: 12.62 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -4.92 Total: -127.91 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.99 5.27 -62.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717949737.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.203 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds