Wall clock time and date at job start Wed Apr 1 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47378 * 2 1 4 4 C 1.53004 * 109.47043 * 240.00120 * 2 1 3 5 5 C 1.53001 * 109.47370 * 120.00219 * 2 1 3 6 6 H 1.09001 * 109.46810 * 300.00222 * 5 2 1 7 7 C 1.52993 * 109.47370 * 180.02562 * 5 2 1 8 8 N 1.46499 * 109.47350 * 184.99764 * 7 5 2 9 9 C 1.36932 * 120.00186 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00027 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00113 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99802 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47248 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47037 * 120.00035 * 13 11 9 16 16 H 1.48501 * 109.47094 * 239.99524 * 13 11 9 17 17 N 1.46502 * 109.46987 * 59.99818 * 5 2 1 18 18 C 1.34774 * 119.99839 * 275.00432 * 17 5 2 19 19 O 1.21278 * 120.00327 * 359.97438 * 18 17 5 20 20 C 1.50701 * 119.99835 * 180.02562 * 18 17 5 21 21 H 1.09005 * 109.22473 * 59.45408 * 20 18 17 22 22 C 1.52718 * 109.25803 * 178.91163 * 20 18 17 23 23 C 1.53323 * 108.44084 * 171.57454 * 22 20 18 24 24 C 1.52763 * 108.36039 * 290.15311 * 23 22 20 25 25 C 1.50494 * 110.56217 * 50.83482 * 24 23 22 26 26 C 1.39188 * 117.97628 * 162.62573 * 25 24 23 27 27 C 1.38409 * 118.86176 * 179.62094 * 26 25 24 28 28 C 1.38234 * 118.85029 * 0.03960 * 27 26 25 29 29 N 1.31512 * 120.60759 * 0.11547 * 28 27 26 30 30 C 1.32704 * 122.39885 * 359.90982 * 29 28 27 31 31 H 1.09001 * 109.47336 * 299.99880 * 1 2 3 32 32 H 1.09004 * 109.47426 * 59.99932 * 1 2 3 33 33 H 1.09004 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47327 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46898 * 300.00392 * 3 2 1 36 36 H 1.09001 * 109.46790 * 59.99785 * 3 2 1 37 37 H 1.08998 * 109.46952 * 299.99881 * 4 2 1 38 38 H 1.08998 * 109.46757 * 60.00085 * 4 2 1 39 39 H 1.08998 * 109.46881 * 179.97438 * 4 2 1 40 40 H 1.09003 * 109.47061 * 305.00341 * 7 5 2 41 41 H 1.09007 * 109.47092 * 64.99697 * 7 5 2 42 42 H 0.96997 * 119.99643 * 0.02562 * 8 7 5 43 43 H 0.97000 * 120.00133 * 180.02562 * 12 11 9 44 44 H 0.96997 * 120.00069 * 95.00590 * 17 5 2 45 45 H 1.09001 * 109.64491 * 291.26519 * 22 20 18 46 46 H 1.09001 * 109.64094 * 51.67997 * 22 20 18 47 47 H 1.09005 * 109.68350 * 49.86776 * 23 22 20 48 48 H 1.08996 * 109.68521 * 170.39218 * 23 22 20 49 49 H 1.08993 * 109.26195 * 171.12010 * 24 23 22 50 50 H 1.09006 * 109.25613 * 290.55990 * 24 23 22 51 51 H 1.07997 * 120.56850 * 359.64406 * 26 25 24 52 52 H 1.08004 * 120.57727 * 180.02562 * 27 26 25 53 53 H 1.08001 * 119.69803 * 180.12395 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6766 -0.2075 2.1392 7 6 3.5699 -0.7207 1.2495 8 7 4.0584 -1.5129 2.3809 9 6 5.4046 -1.6555 2.5864 10 1 6.1064 -1.1844 1.9142 11 6 5.8674 -2.4066 3.6582 12 7 5.0122 -2.9813 4.4771 13 14 7.7040 -2.6018 3.9381 14 1 8.4464 -1.8637 2.8849 15 1 8.0622 -2.0558 5.2718 16 1 8.0634 -4.0414 3.8798 17 7 1.5516 -2.1025 1.2492 18 6 0.3297 -2.3852 1.7424 19 8 -0.3655 -1.4963 2.1867 20 6 -0.1725 -3.8061 1.7429 21 1 0.5081 -4.4271 2.3255 22 6 -1.5612 -3.8493 2.3767 23 6 -2.1413 -5.2547 2.1785 24 6 -2.4586 -5.4395 0.6956 25 6 -1.2689 -5.0715 -0.1494 26 6 -1.2412 -5.5176 -1.4675 27 6 -0.1594 -5.1831 -2.2635 28 6 0.8564 -4.4182 -1.7213 29 7 0.7977 -4.0169 -0.4703 30 6 -0.2211 -4.3166 0.3255 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2073 -2.1392 39 1 3.1299 -0.7208 -1.2495 40 1 3.9336 -1.1547 0.3181 41 1 3.9329 0.3032 1.3393 42 1 3.4281 -1.9364 2.9844 43 1 5.3356 -3.5059 5.2262 44 1 2.1077 -2.8135 0.8942 45 1 -1.4848 -3.6314 3.4420 46 1 -2.2058 -3.1125 1.8974 47 1 -1.4118 -6.0008 2.4936 48 1 -3.0532 -5.3617 2.7659 49 1 -2.7222 -6.4809 0.5114 50 1 -3.3015 -4.8029 0.4263 51 1 -2.0502 -6.1142 -1.8626 52 1 -0.1097 -5.5141 -3.2903 53 1 1.7060 -4.1476 -2.3307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717965821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:56 Heat of formation + Delta-G solvation = -25.516536 kcal Electronic energy + Delta-G solvation = -32655.147200 eV Core-core repulsion = 28718.338513 eV Total energy + Delta-G solvation = -3936.808687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.06520 -40.76809 -38.84041 -37.14812 -36.18613 -34.76399 -33.99822 -32.87345 -31.36631 -30.92674 -29.27836 -28.12854 -27.84667 -25.97750 -25.27420 -24.17581 -24.00679 -22.93098 -21.53021 -20.61703 -19.80255 -19.09239 -18.11577 -17.67541 -17.50984 -17.00391 -16.66874 -16.50560 -16.13927 -15.52303 -15.33405 -15.13153 -14.97378 -14.87589 -14.73549 -14.60088 -14.29842 -14.17870 -13.79104 -13.77063 -13.54728 -13.25324 -13.05496 -13.02974 -12.94903 -12.83898 -12.76093 -12.50169 -12.34134 -12.12469 -12.07886 -11.98567 -11.84746 -11.72482 -11.60381 -11.48150 -11.27778 -10.97477 -10.81563 -10.50413 -10.24529 -9.69511 -9.64376 -8.98172 -7.93149 -5.22355 0.17772 0.39929 1.47174 1.48045 1.58129 1.77080 2.39227 2.56488 2.88631 3.23014 3.40888 3.54555 3.68261 3.81796 3.84484 3.91153 3.92685 4.08050 4.14444 4.19353 4.25418 4.32404 4.37844 4.39474 4.44506 4.49339 4.58174 4.67261 4.72153 4.80408 4.83666 4.87012 4.90844 4.93163 4.96194 4.98700 5.07220 5.08265 5.11738 5.20432 5.21291 5.25329 5.29541 5.31857 5.39890 5.41948 5.49413 5.53341 5.57012 5.78400 5.83792 6.27530 6.80007 7.07758 7.34264 7.45313 8.08245 8.32993 9.30477 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009845 B = 0.003897 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.353238 B = 7183.764527 C = 8090.536934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.137 4.137 5 C 0.156 3.844 6 H 0.050 0.950 7 C 0.148 3.852 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.078 0.922 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.973 3.027 14 H -0.264 1.264 15 H -0.296 1.296 16 H -0.294 1.294 17 N -0.684 5.684 18 C 0.523 3.477 19 O -0.579 6.579 20 C -0.057 4.057 21 H 0.100 0.900 22 C -0.093 4.093 23 C -0.116 4.116 24 C -0.074 4.074 25 C -0.124 4.124 26 C -0.078 4.078 27 C -0.165 4.165 28 C 0.088 3.912 29 N -0.505 5.505 30 C 0.116 3.884 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.372 0.628 43 H 0.249 0.751 44 H 0.410 0.590 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.088 0.912 51 H 0.166 0.834 52 H 0.165 0.835 53 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.985 -5.438 -16.574 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.069 4.069 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.051 3.949 6 H 0.068 0.932 7 C 0.021 3.979 8 N -0.384 5.384 9 C -0.372 4.372 10 H 0.096 0.904 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.189 1.189 15 H -0.224 1.224 16 H -0.221 1.221 17 N -0.334 5.334 18 C 0.310 3.690 19 O -0.460 6.460 20 C -0.079 4.079 21 H 0.118 0.882 22 C -0.132 4.132 23 C -0.153 4.153 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.104 4.104 27 C -0.184 4.184 28 C -0.071 4.071 29 N -0.214 5.214 30 C -0.019 4.019 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.249 0.751 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.114 0.886 49 H 0.120 0.880 50 H 0.107 0.893 51 H 0.183 0.817 52 H 0.183 0.817 53 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.572 -4.266 -15.988 23.419 hybrid contribution 0.755 -0.908 0.536 1.296 sum -15.818 -5.174 -15.452 22.710 Atomic orbital electron populations 1.21693 0.94362 1.00605 1.00401 1.20808 0.95648 0.95852 0.94599 1.21879 1.01340 0.94293 1.02080 1.21887 1.00898 1.00798 0.95870 1.21059 0.93184 0.82967 0.97734 0.93155 1.21173 0.91099 0.94899 0.90719 1.42531 1.03985 1.60753 1.31157 1.19663 0.84605 1.24755 1.08175 0.90406 1.25544 1.01783 1.01094 0.98216 1.69847 1.34317 1.39423 1.18417 0.85079 0.80337 0.77000 0.77364 1.18873 1.22362 1.22081 1.45936 1.16913 1.09704 1.60867 1.20468 0.81502 0.90603 0.76471 1.90627 1.57505 1.49021 1.48863 1.20203 1.00618 0.93243 0.93845 0.88170 1.21344 0.92454 0.98859 1.00514 1.21595 1.02136 0.94946 0.96616 1.20510 0.94187 1.03360 0.93097 1.20688 0.97062 0.98324 0.96561 1.21958 0.98865 0.97487 0.92068 1.22453 0.94493 0.98938 1.02538 1.23014 0.99126 0.94292 0.90694 1.67275 1.25670 1.21745 1.06754 1.20468 0.91288 0.96148 0.94000 0.94243 0.92383 0.94483 0.92140 0.90756 0.93474 0.92021 0.91776 0.92578 0.94328 0.94687 0.79609 0.94176 0.75144 0.91462 0.91545 0.91537 0.88628 0.87969 0.89327 0.81661 0.81734 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.51 7.00 71.98 0.50 -3.00 16 2 C -0.07 -2.03 0.62 -52.18 -0.03 -2.06 16 3 C -0.14 -3.71 8.12 71.98 0.58 -3.13 16 4 C -0.14 -3.65 7.97 71.98 0.57 -3.07 16 5 C 0.16 5.84 1.69 44.99 0.08 5.92 16 6 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 7 C 0.15 6.11 5.10 86.38 0.44 6.55 16 8 N -0.74 -38.77 5.43 -343.46 -1.87 -40.64 16 9 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 10 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 11 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 12 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 13 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 14 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 17 N -0.68 -25.21 3.04 -442.54 -1.35 -26.55 16 18 C 0.52 19.22 5.39 87.66 0.47 19.70 16 19 O -0.58 -23.91 12.94 -3.02 -0.04 -23.95 16 20 C -0.06 -1.73 2.70 -12.37 -0.03 -1.76 16 21 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 22 C -0.09 -2.36 4.66 30.61 0.14 -2.21 16 23 C -0.12 -1.98 5.98 30.62 0.18 -1.80 16 24 C -0.07 -1.07 5.69 29.70 0.17 -0.90 16 25 C -0.12 -2.46 5.74 -19.85 -0.11 -2.57 16 26 C -0.08 -1.16 9.75 22.54 0.22 -0.94 16 27 C -0.16 -2.49 10.12 22.31 0.23 -2.27 16 28 C 0.09 1.83 10.97 84.74 0.93 2.76 16 29 N -0.51 -13.71 6.83 -184.01 -1.26 -14.97 16 30 C 0.12 3.06 6.19 42.28 0.26 3.32 16 31 H 0.04 1.36 7.53 -2.39 -0.02 1.34 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.26 5.78 -2.38 -0.01 1.24 16 34 H 0.06 1.63 6.54 -2.39 -0.02 1.62 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.71 6.56 -2.39 -0.02 1.69 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.52 6.32 -2.39 -0.02 1.50 16 40 H 0.04 1.55 6.18 -2.39 -0.01 1.53 16 41 H 0.04 1.45 6.71 -2.38 -0.02 1.43 16 42 H 0.37 21.22 7.33 -92.71 -0.68 20.54 16 43 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.41 15.60 7.02 -92.71 -0.65 14.95 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.07 1.79 7.77 -2.39 -0.02 1.77 16 47 H 0.07 1.18 8.10 -2.38 -0.02 1.17 16 48 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.10 0.98 8.13 -2.39 -0.02 0.96 16 50 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 52 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 53 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -72.04 402.36 3.30 -68.74 By element: Atomic # 1 Polarization: 51.31 SS G_CDS: -0.41 Total: 50.89 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.91 Total: -2.07 kcal Atomic # 7 Polarization: -138.25 SS G_CDS: -4.19 Total: -142.44 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.04 Total: -23.95 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -72.04 3.30 -68.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717965821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.228 kcal (2) G-P(sol) polarization free energy of solvation -72.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds