Wall clock time and date at job start Wed Apr 1 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 C 1.53001 * 109.47023 * 240.00234 * 2 1 3 5 5 C 1.53001 * 109.47222 * 120.00260 * 2 1 3 6 6 H 1.08999 * 109.46888 * 300.00272 * 5 2 1 7 7 C 1.53003 * 109.47014 * 59.99518 * 5 2 1 8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 2 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31617 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47050 * 59.99408 * 13 11 9 15 15 H 1.48496 * 109.47289 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46855 * 299.99389 * 13 11 9 17 17 N 1.46491 * 109.46969 * 180.02562 * 5 2 1 18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 2 19 19 O 1.21276 * 120.00028 * 359.97438 * 18 17 5 20 20 C 1.50709 * 119.99791 * 179.97438 * 18 17 5 21 21 H 1.08997 * 109.24851 * 60.52249 * 20 18 17 22 22 C 1.52724 * 109.25600 * 180.02562 * 20 18 17 23 23 C 1.53324 * 108.42882 * 171.55698 * 22 20 18 24 24 C 1.52770 * 108.34678 * 290.10594 * 23 22 20 25 25 C 1.50492 * 110.56152 * 50.80472 * 24 23 22 26 26 C 1.39190 * 117.97441 * 162.70650 * 25 24 23 27 27 C 1.38407 * 118.87099 * 179.78784 * 26 25 24 28 28 C 1.38246 * 118.84101 * 359.97115 * 27 26 25 29 29 N 1.31510 * 120.61071 * 0.09120 * 28 27 26 30 30 C 1.32706 * 122.39693 * 0.03602 * 29 28 27 31 31 H 1.09003 * 109.46997 * 299.99550 * 1 2 3 32 32 H 1.08995 * 109.47549 * 59.99839 * 1 2 3 33 33 H 1.08995 * 109.47112 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46710 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47086 * 299.99880 * 3 2 1 36 36 H 1.09003 * 109.46878 * 60.00377 * 3 2 1 37 37 H 1.09005 * 109.47003 * 299.99789 * 4 2 1 38 38 H 1.08995 * 109.47017 * 59.99602 * 4 2 1 39 39 H 1.08999 * 109.47109 * 180.02562 * 4 2 1 40 40 H 1.08998 * 109.46692 * 55.00382 * 7 5 2 41 41 H 1.08994 * 109.47584 * 295.00246 * 7 5 2 42 42 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 43 43 H 0.97004 * 120.00382 * 180.02562 * 12 11 9 44 44 H 0.97006 * 119.99804 * 264.99213 * 17 5 2 45 45 H 1.09007 * 109.67144 * 291.29163 * 22 20 18 46 46 H 1.08996 * 109.66869 * 51.78544 * 22 20 18 47 47 H 1.09007 * 109.68787 * 49.81780 * 23 22 20 48 48 H 1.08995 * 109.69385 * 170.34891 * 23 22 20 49 49 H 1.09004 * 109.25806 * 171.07760 * 24 23 22 50 50 H 1.08992 * 109.25725 * 290.51901 * 24 23 22 51 51 H 1.08004 * 120.56546 * 359.81135 * 26 25 24 52 52 H 1.07996 * 120.58233 * 179.97438 * 27 26 25 53 53 H 1.07996 * 119.69639 * 180.10905 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 1.5300 -2.1638 1.2492 8 7 2.1142 -2.8883 2.3806 9 6 1.8011 -4.2055 2.5853 10 1 1.1231 -4.7103 1.9128 11 6 2.3590 -4.8936 3.6540 12 7 3.1893 -4.2800 4.4703 13 14 1.9325 -6.6908 3.9328 14 1 2.3356 -7.4853 2.7448 15 1 2.6543 -7.1908 5.1304 16 1 0.4687 -6.8250 4.1447 17 7 3.5050 -0.7207 1.2495 18 6 4.1784 0.3373 1.7430 19 8 3.5716 1.2890 2.1866 20 6 5.6855 0.3375 1.7438 21 1 6.0453 0.2572 0.7181 22 6 6.1886 1.6441 2.3539 23 6 7.7068 1.5386 2.5410 24 6 7.9850 0.5346 3.6584 25 6 7.2405 -0.7499 3.4122 26 6 7.6492 -1.8848 4.1067 27 6 6.9747 -3.0752 3.8978 28 6 5.9178 -3.0953 3.0068 29 7 5.5603 -2.0032 2.3672 30 6 6.1824 -0.8435 2.5375 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8901 37 1 1.6767 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2491 40 1 1.8183 -2.6510 0.3178 41 1 0.4437 -2.1651 1.3388 42 1 2.7228 -2.4349 2.9847 43 1 3.5795 -4.7609 5.2170 44 1 3.9903 -1.4819 0.8945 45 1 5.9580 2.4738 1.6857 46 1 5.7097 1.8064 3.3194 47 1 8.1679 1.1947 1.6151 48 1 8.1119 2.5132 2.8130 49 1 9.0546 0.3282 3.6981 50 1 7.6656 0.9586 4.6103 51 1 8.4783 -1.8372 4.7972 52 1 7.2687 -3.9726 4.4217 53 1 5.3807 -4.0162 2.8346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717965823.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:05 Heat of formation + Delta-G solvation = -21.451372 kcal Electronic energy + Delta-G solvation = -33015.265956 eV Core-core repulsion = 29078.633548 eV Total energy + Delta-G solvation = -3936.632408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.96692 -40.73599 -38.77977 -37.07207 -36.09126 -34.73150 -33.89855 -32.77335 -31.25359 -30.84408 -29.20054 -28.13833 -27.79638 -25.89978 -25.15222 -24.07176 -23.93696 -22.86034 -21.48708 -20.54210 -19.75345 -18.98618 -18.08205 -17.50884 -17.40577 -16.95163 -16.74249 -16.30697 -16.17085 -15.40192 -15.30659 -15.07608 -14.85344 -14.79289 -14.71567 -14.48680 -14.33596 -14.11060 -13.74552 -13.66353 -13.49806 -13.15585 -12.98787 -12.95023 -12.90451 -12.76460 -12.70296 -12.49537 -12.34273 -12.18414 -12.03679 -11.92162 -11.77506 -11.65093 -11.59991 -11.41742 -11.24657 -10.87955 -10.76057 -10.41989 -10.12580 -9.65980 -9.53184 -8.83762 -7.78663 -5.07433 0.29044 0.50187 1.50107 1.51325 1.56565 1.78869 2.44802 2.61914 2.99763 3.32136 3.50790 3.61701 3.72907 3.86136 3.93851 3.96546 3.97724 4.08997 4.21884 4.28539 4.33181 4.38268 4.42579 4.44103 4.49687 4.52084 4.66755 4.70401 4.80945 4.85082 4.86201 4.94450 4.95093 4.98625 4.99016 5.04256 5.08159 5.10116 5.17738 5.20146 5.27042 5.27401 5.33870 5.43348 5.46484 5.48016 5.50720 5.57599 5.60393 5.81345 5.94794 6.37638 6.84012 7.22392 7.46634 7.49419 8.21037 8.48985 9.40585 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007652 B = 0.005967 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.322921 B = 4691.056938 C = 7854.490391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.118 4.118 4 C -0.134 4.134 5 C 0.157 3.843 6 H 0.045 0.955 7 C 0.147 3.853 8 N -0.734 5.734 9 C -0.243 4.243 10 H 0.067 0.933 11 C -0.057 4.057 12 N -0.942 5.942 13 Si 0.960 3.040 14 H -0.282 1.282 15 H -0.298 1.298 16 H -0.290 1.290 17 N -0.686 5.686 18 C 0.521 3.479 19 O -0.579 6.579 20 C -0.048 4.048 21 H 0.124 0.876 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.132 4.132 26 C -0.079 4.079 27 C -0.177 4.177 28 C 0.128 3.872 29 N -0.492 5.492 30 C 0.108 3.892 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.029 0.971 42 H 0.378 0.622 43 H 0.246 0.754 44 H 0.411 0.589 45 H 0.084 0.916 46 H 0.052 0.948 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.162 0.838 52 H 0.141 0.859 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 11.302 -8.272 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.175 4.175 4 C -0.192 4.192 5 C 0.051 3.949 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.378 5.378 9 C -0.375 4.375 10 H 0.085 0.915 11 C -0.251 4.251 12 N -0.592 5.592 13 Si 0.791 3.209 14 H -0.208 1.208 15 H -0.224 1.224 16 H -0.217 1.217 17 N -0.336 5.336 18 C 0.307 3.693 19 O -0.460 6.460 20 C -0.070 4.070 21 H 0.142 0.858 22 C -0.132 4.132 23 C -0.148 4.148 24 C -0.111 4.111 25 C -0.134 4.134 26 C -0.104 4.104 27 C -0.197 4.197 28 C -0.031 4.031 29 N -0.201 5.201 30 C -0.028 4.028 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.211 0.789 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.096 0.904 51 H 0.180 0.820 52 H 0.159 0.841 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.811 11.736 -8.588 17.543 hybrid contribution 0.273 -1.874 1.414 2.363 sum 10.084 9.862 -7.174 15.825 Atomic orbital electron populations 1.21865 0.93406 1.02147 1.02114 1.20867 0.96334 0.95698 0.94379 1.21748 1.00361 0.94595 1.00784 1.21844 1.00793 1.00194 0.96325 1.21033 0.80694 0.95591 0.97558 0.93708 1.21130 0.95888 0.89942 0.91053 1.42434 1.55233 1.09175 1.30917 1.19430 1.21444 0.88165 1.08492 0.91506 1.25270 1.00543 1.00894 0.98358 1.69843 1.35147 1.36310 1.17903 0.85436 0.76974 0.81884 0.76606 1.20840 1.22404 1.21689 1.45993 1.06269 1.20091 1.61244 1.20561 0.90110 0.82051 0.76556 1.90633 1.70680 1.36204 1.48461 1.20225 0.91141 0.94110 1.01513 0.85798 1.21364 0.96786 0.93871 1.01133 1.21581 0.93868 1.00211 0.99120 1.20498 1.00188 0.90575 0.99818 1.20669 0.97476 0.97937 0.97287 1.21851 0.99541 0.91238 0.97814 1.22252 0.97463 1.00225 0.99760 1.22436 0.92688 0.95900 0.92103 1.67232 1.27888 0.99043 1.25943 1.20846 0.93139 0.92492 0.96303 0.93607 0.90532 0.92400 0.93793 0.91788 0.94243 0.92583 0.90996 0.93128 0.94710 0.95314 0.78900 0.94542 0.75053 0.89765 0.92924 0.90400 0.88483 0.88101 0.90361 0.82011 0.84133 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.12 71.98 0.58 -3.03 16 2 C -0.07 -2.06 0.62 -52.18 -0.03 -2.09 16 3 C -0.12 -3.37 7.00 71.98 0.50 -2.87 16 4 C -0.13 -3.39 7.97 71.98 0.57 -2.82 16 5 C 0.16 5.80 1.69 44.99 0.08 5.87 16 6 H 0.04 1.97 7.58 -2.39 -0.02 1.95 16 7 C 0.15 6.06 5.10 86.38 0.44 6.50 16 8 N -0.73 -37.47 5.43 -343.46 -1.87 -39.34 16 9 C -0.24 -13.38 9.99 84.03 0.84 -12.55 16 10 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 11 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 12 N -0.94 -54.27 13.04 21.65 0.28 -53.99 16 13 Si 0.96 45.47 29.55 68.60 2.03 47.50 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 N -0.69 -24.59 3.04 -442.54 -1.35 -25.94 16 18 C 0.52 18.42 5.42 87.66 0.47 18.89 16 19 O -0.58 -23.21 12.95 -3.02 -0.04 -23.25 16 20 C -0.05 -1.37 2.71 -12.37 -0.03 -1.40 16 21 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 22 C -0.09 -2.18 4.65 30.61 0.14 -2.04 16 23 C -0.11 -1.79 5.98 30.63 0.18 -1.61 16 24 C -0.07 -1.33 5.68 29.71 0.17 -1.16 16 25 C -0.13 -3.52 5.74 -19.85 -0.11 -3.63 16 26 C -0.08 -2.06 9.75 22.54 0.22 -1.84 16 27 C -0.18 -5.65 10.12 22.31 0.23 -5.42 16 28 C 0.13 4.99 11.19 84.74 0.95 5.94 16 29 N -0.49 -18.57 7.54 -184.00 -1.39 -19.95 16 30 C 0.11 3.45 6.20 42.28 0.26 3.71 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.56 6.55 -2.39 -0.02 1.54 16 34 H 0.04 1.32 5.77 -2.39 -0.01 1.31 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.29 7.53 -2.39 -0.02 1.27 16 37 H 0.06 1.48 6.32 -2.38 -0.02 1.46 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.30 7.60 -2.39 -0.02 1.28 16 40 H 0.04 1.39 6.17 -2.39 -0.01 1.38 16 41 H 0.03 1.21 6.71 -2.39 -0.02 1.19 16 42 H 0.38 20.97 7.33 -92.70 -0.68 20.29 16 43 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.41 15.20 6.93 -92.70 -0.64 14.56 16 45 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.05 1.50 7.78 -2.39 -0.02 1.48 16 47 H 0.08 1.12 8.10 -2.38 -0.02 1.10 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 49 H 0.10 1.31 8.13 -2.39 -0.02 1.29 16 50 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 52 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 53 H 0.13 5.94 8.05 -2.91 -0.02 5.92 16 Total: -1.00 -66.38 404.26 3.19 -63.19 By element: Atomic # 1 Polarization: 54.42 SS G_CDS: -0.41 Total: 54.01 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.93 Total: -2.23 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -4.32 Total: -139.22 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.38 3.19 -63.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717965823.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.738 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds