Wall clock time and date at job start Wed Apr 1 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46948 * 2 1 4 4 C 1.53004 * 109.46828 * 176.96613 * 3 2 1 5 5 H 1.08993 * 109.47465 * 57.99338 * 4 3 2 6 6 C 1.50702 * 109.47142 * 177.99757 * 4 3 2 7 7 O 1.21284 * 119.99839 * 1.18700 * 6 4 3 8 8 N 1.34773 * 120.00154 * 181.19610 * 6 4 3 9 9 C 1.47427 * 125.64749 * 359.59221 * 8 6 4 10 10 C 1.54911 * 104.83219 * 204.16617 * 9 8 6 11 11 C 1.55401 * 101.66606 * 323.07720 * 10 9 8 12 12 C 1.47020 * 125.64819 * 179.63395 * 8 6 4 13 13 H 1.09000 * 109.88170 * 59.33800 * 12 8 6 14 14 C 1.52994 * 109.88442 * 298.32292 * 12 8 6 15 15 N 1.46492 * 109.47339 * 56.08916 * 14 12 8 16 16 C 1.46499 * 119.99934 * 77.21107 * 15 14 12 17 17 C 1.36935 * 120.00506 * 257.20892 * 15 14 12 18 18 H 1.08004 * 119.99661 * 44.18404 * 17 15 14 19 19 C 1.38804 * 120.00406 * 224.18340 * 17 15 14 20 20 N 1.31619 * 120.00092 * 5.40204 * 19 17 15 21 21 Si 1.86813 * 120.00048 * 185.40588 * 19 17 15 22 22 H 1.48501 * 109.46634 * 4.94335 * 21 19 17 23 23 H 1.48498 * 109.46777 * 124.94273 * 21 19 17 24 24 H 1.48495 * 109.46887 * 244.94235 * 21 19 17 25 25 C 1.50699 * 109.46696 * 297.98927 * 4 3 2 26 26 C 1.38230 * 119.62228 * 275.39029 * 25 4 3 27 27 C 1.38630 * 119.16483 * 179.75544 * 26 25 4 28 28 C 1.38672 * 118.41550 * 0.50842 * 27 26 25 29 29 C 1.38176 * 119.16735 * 359.73333 * 28 27 26 30 30 N 1.31855 * 119.61862 * 95.66063 * 25 4 3 31 31 H 1.08997 * 109.47480 * 300.00024 * 1 2 3 32 32 H 1.09003 * 109.46983 * 60.00121 * 1 2 3 33 33 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46664 * 239.99978 * 2 1 3 35 35 H 1.08993 * 109.47104 * 120.00028 * 2 1 3 36 36 H 1.08993 * 109.47474 * 56.96408 * 3 2 1 37 37 H 1.09006 * 109.47299 * 296.96107 * 3 2 1 38 38 H 1.09001 * 110.36506 * 323.00535 * 9 8 6 39 39 H 1.08996 * 110.36517 * 85.21826 * 9 8 6 40 40 H 1.09004 * 111.00267 * 81.06418 * 10 9 8 41 41 H 1.08996 * 111.00036 * 204.87892 * 10 9 8 42 42 H 1.09004 * 110.69412 * 277.04880 * 11 10 9 43 43 H 1.08992 * 110.85632 * 153.69918 * 11 10 9 44 44 H 1.09009 * 109.47061 * 296.08855 * 14 12 8 45 45 H 1.09007 * 109.47253 * 176.09226 * 14 12 8 46 46 H 1.09007 * 109.47318 * 266.97377 * 16 15 14 47 47 H 1.09005 * 109.47409 * 26.97679 * 16 15 14 48 48 H 1.09000 * 109.47360 * 146.97363 * 16 15 14 49 49 H 0.97004 * 119.99919 * 180.02562 * 20 19 17 50 50 H 1.08002 * 120.41640 * 359.97438 * 26 25 4 51 51 H 1.07995 * 120.79249 * 180.21680 * 27 26 25 52 52 H 1.08003 * 120.41581 * 179.70722 * 28 27 26 53 53 H 1.07998 * 119.62275 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5681 1.4431 0.0763 5 1 3.9742 0.8833 -0.7661 6 6 4.0729 2.8622 0.0268 7 8 3.2869 3.7835 -0.0392 8 7 5.3978 3.1075 0.0557 9 6 6.4588 2.0876 0.1429 10 6 7.6725 2.8294 0.7563 11 6 7.5513 4.2306 0.0952 12 6 6.0244 4.4366 0.0063 13 1 5.6822 5.0393 0.8475 14 6 5.6688 5.1309 -1.3098 15 7 4.2120 5.1947 -1.4503 16 6 3.4462 6.1891 -0.6947 17 6 3.5661 4.3249 -2.2877 18 1 3.8330 3.2784 -2.2896 19 6 2.5682 4.7882 -3.1341 20 7 2.3155 6.0777 -3.2097 21 14 1.5839 3.5814 -4.1659 22 1 1.9761 2.1934 -3.8127 23 1 0.1351 3.7695 -3.8998 24 1 1.8581 3.8223 -5.6053 25 6 4.0068 0.7987 1.3661 26 6 4.0702 1.5556 2.5210 27 6 4.4701 0.9520 3.7032 28 6 4.8030 -0.3939 3.6772 29 6 4.7203 -1.0851 2.4836 30 7 4.3309 -0.4793 1.3787 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6329 1.9718 0.8614 37 1 1.7218 1.9404 -0.9160 38 1 6.1463 1.2697 0.7922 39 1 6.7047 1.7103 -0.8497 40 1 7.5794 2.9015 1.8399 41 1 8.6081 2.3444 0.4780 42 1 7.9986 4.2275 -0.8988 43 1 8.0078 4.9963 0.7223 44 1 6.0899 4.5680 -2.1430 45 1 6.0785 6.1411 -1.3100 46 1 3.1066 5.7501 0.2435 47 1 4.0786 7.0517 -0.4844 48 1 2.5835 6.5055 -1.2811 49 1 1.6179 6.4014 -3.8010 50 1 3.8081 2.6032 2.5033 51 1 4.5256 1.5176 4.6215 52 1 5.1232 -0.8955 4.5785 53 1 4.9774 -2.1337 2.4551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725043624.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:37 Heat of formation + Delta-G solvation = 33.209007 kcal Electronic energy + Delta-G solvation = -33642.724476 eV Core-core repulsion = 29708.462320 eV Total energy + Delta-G solvation = -3934.262156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.86856 -40.52652 -38.41063 -37.01407 -36.26073 -33.70444 -33.36087 -33.11166 -31.98675 -30.63082 -30.06509 -27.78879 -26.57589 -26.14740 -24.54987 -24.15603 -23.38460 -22.42090 -22.07550 -21.24363 -19.52624 -18.81407 -18.10202 -17.76692 -17.29019 -16.98144 -16.81921 -16.45466 -15.91404 -15.79825 -15.48841 -15.23005 -15.00373 -14.82725 -14.52071 -14.43459 -14.13657 -13.90624 -13.82307 -13.56757 -13.41555 -13.25255 -13.14021 -12.98105 -12.90737 -12.76052 -12.42010 -12.32442 -12.27584 -12.18453 -11.98782 -11.90705 -11.80548 -11.74160 -11.65923 -11.59309 -11.52099 -10.76903 -10.51619 -10.35051 -10.21628 -9.77052 -9.36700 -8.10994 -7.48245 -5.34743 0.17383 0.38809 1.37446 1.39703 1.48315 2.07889 2.30632 2.53673 2.85641 3.29002 3.46141 3.56690 3.73961 3.80836 3.94568 3.94720 4.00952 4.08727 4.09608 4.16790 4.21008 4.24708 4.32449 4.38830 4.43850 4.55481 4.61666 4.66612 4.72814 4.76304 4.80526 4.85546 4.88216 4.89528 4.97621 5.00272 5.01304 5.06231 5.13435 5.16917 5.22312 5.25754 5.29473 5.34125 5.41292 5.44516 5.49026 5.68317 5.80913 5.87253 5.95544 6.65888 6.96661 7.07229 7.35304 7.80096 8.02800 8.58838 9.30550 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.005783 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.338425 B = 4840.668357 C = 6836.577668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.085 4.085 4 C -0.046 4.046 5 H 0.089 0.911 6 C 0.512 3.488 7 O -0.489 6.489 8 N -0.611 5.611 9 C 0.098 3.902 10 C -0.114 4.114 11 C -0.116 4.116 12 C 0.122 3.878 13 H 0.043 0.957 14 C 0.139 3.861 15 N -0.581 5.581 16 C 0.147 3.853 17 C -0.182 4.182 18 H 0.034 0.966 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.296 1.296 24 H -0.290 1.290 25 C 0.146 3.854 26 C -0.174 4.174 27 C -0.070 4.070 28 C -0.165 4.165 29 C 0.095 3.905 30 N -0.497 5.497 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.035 0.965 46 H -0.003 1.003 47 H 0.002 0.998 48 H 0.051 0.949 49 H 0.242 0.758 50 H 0.106 0.894 51 H 0.155 0.845 52 H 0.171 0.829 53 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -15.261 16.104 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.124 4.124 4 C -0.068 4.068 5 H 0.107 0.893 6 C 0.299 3.701 7 O -0.361 6.361 8 N -0.348 5.348 9 C -0.025 4.025 10 C -0.152 4.152 11 C -0.154 4.154 12 C 0.016 3.984 13 H 0.061 0.939 14 C 0.012 3.988 15 N -0.302 5.302 16 C 0.002 3.998 17 C -0.314 4.314 18 H 0.052 0.948 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.224 1.224 24 H -0.217 1.217 25 C 0.010 3.990 26 C -0.194 4.194 27 C -0.096 4.096 28 C -0.184 4.184 29 C -0.062 4.062 30 N -0.207 5.207 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.021 0.979 48 H 0.069 0.931 49 H 0.052 0.948 50 H 0.124 0.876 51 H 0.173 0.827 52 H 0.188 0.812 53 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.876 -15.149 15.185 23.614 hybrid contribution -1.053 0.574 -0.344 1.248 sum 8.823 -14.575 14.841 22.595 Atomic orbital electron populations 1.21754 0.95085 1.02318 1.01479 1.21424 0.96291 0.94741 1.02185 1.21257 0.91783 0.97709 1.01606 1.20119 0.97444 0.93085 0.96194 0.89275 1.19866 0.81777 0.90312 0.78184 1.90915 1.55217 1.45223 1.44708 1.48242 1.04543 1.07384 1.74654 1.22388 0.88248 0.91670 1.00179 1.22722 0.97451 0.94766 1.00247 1.22665 0.92015 0.98386 1.02344 1.22228 0.93536 0.84590 0.98045 0.93896 1.21365 0.85183 0.97080 0.95190 1.43474 1.00356 1.38166 1.48205 1.20825 0.96541 0.88808 0.93636 1.18710 1.14865 0.88529 1.09258 0.94809 1.25907 1.02890 0.96354 0.99357 1.69948 1.34317 1.13199 1.40631 0.85600 0.78474 0.79963 0.79038 1.19294 1.22373 1.21707 1.20313 0.95316 0.90157 0.93236 1.21857 1.02554 1.00610 0.94374 1.21838 0.94260 0.95709 0.97745 1.22476 1.00676 0.94521 1.00731 1.23321 0.94044 1.01345 0.87524 1.67495 1.11686 1.09590 1.31911 0.92711 0.93844 0.90833 0.92207 0.91451 0.92620 0.93665 0.91333 0.92729 0.90410 0.87638 0.90186 0.88580 0.94016 0.94713 0.98488 0.97931 0.93052 0.94820 0.87562 0.82704 0.81192 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.11 -3.26 5.73 30.59 0.18 -3.09 16 3 C -0.09 -3.15 4.00 30.59 0.12 -3.03 16 4 C -0.05 -1.64 2.08 -12.28 -0.03 -1.66 16 5 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 6 C 0.51 21.01 3.50 87.66 0.31 21.32 16 7 O -0.49 -24.56 8.82 -3.04 -0.03 -24.59 16 8 N -0.61 -21.62 3.06 -788.06 -2.41 -24.03 16 9 C 0.10 2.63 6.60 86.86 0.57 3.20 16 10 C -0.11 -2.23 7.09 32.07 0.23 -2.00 16 11 C -0.12 -2.70 6.50 31.87 0.21 -2.49 16 12 C 0.12 4.24 3.25 45.34 0.15 4.39 16 13 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 14 C 0.14 6.05 5.33 86.38 0.46 6.51 16 15 N -0.58 -31.12 1.55 -726.94 -1.13 -32.25 16 16 C 0.15 8.13 9.46 127.77 1.21 9.34 16 17 C -0.18 -10.54 6.49 84.03 0.55 -9.99 16 18 H 0.03 2.01 6.47 -2.91 -0.02 1.99 16 19 C -0.05 -3.09 5.28 84.86 0.45 -2.64 16 20 N -0.93 -59.24 11.00 21.65 0.24 -59.01 16 21 Si 0.94 48.70 29.56 68.60 2.03 50.73 16 22 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 24 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 25 C 0.15 4.18 2.46 42.55 0.10 4.29 16 26 C -0.17 -4.61 9.04 22.36 0.20 -4.40 16 27 C -0.07 -1.28 10.18 22.47 0.23 -1.05 16 28 C -0.16 -2.32 10.11 22.36 0.23 -2.09 16 29 C 0.09 1.64 11.18 84.67 0.95 2.58 16 30 N -0.50 -12.44 9.45 -183.89 -1.74 -14.18 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 1.91 6.65 -2.39 -0.02 1.89 16 36 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 37 H 0.04 2.00 8.06 -2.38 -0.02 1.98 16 38 H 0.07 1.80 5.48 -2.39 -0.01 1.79 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.82 7.79 -2.38 -0.02 1.80 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.04 1.86 7.86 -2.38 -0.02 1.84 16 45 H 0.03 1.47 8.08 -2.38 -0.02 1.45 16 46 H 0.00 -0.16 6.26 -2.38 -0.01 -0.17 16 47 H 0.00 0.11 8.00 -2.38 -0.02 0.09 16 48 H 0.05 3.23 5.35 -2.39 -0.01 3.21 16 49 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.11 3.36 7.21 -2.91 -0.02 3.34 16 51 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 52 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 53 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -75.94 402.18 4.65 -71.29 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.87 Total: 16.15 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 6.82 Total: 15.88 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -5.04 Total: -129.47 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.03 Total: -24.59 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -75.94 4.65 -71.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725043624.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.498 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds