Wall clock time and date at job start Wed Apr 1 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.53000 * 109.47042 * 184.89025 * 3 2 1 5 5 H 1.09003 * 109.47393 * 305.82525 * 4 3 2 6 6 C 1.50696 * 109.47039 * 65.82558 * 4 3 2 7 7 O 1.21284 * 120.00280 * 25.29169 * 6 4 3 8 8 N 1.34778 * 120.00063 * 205.29738 * 6 4 3 9 9 C 1.46500 * 120.00232 * 5.00068 * 8 6 4 10 10 C 1.46500 * 120.00101 * 185.00327 * 8 6 4 11 11 H 1.09004 * 109.47247 * 359.97438 * 10 8 6 12 12 C 1.53000 * 109.47137 * 239.99615 * 10 8 6 13 13 N 1.46503 * 109.46994 * 54.99898 * 12 10 8 14 14 C 1.36938 * 120.00315 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99364 * 0.02562 * 14 13 12 16 16 C 1.38799 * 120.00397 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00359 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00193 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47237 * 90.00035 * 18 16 14 20 20 H 1.48504 * 109.47523 * 210.00039 * 18 16 14 21 21 H 1.48498 * 109.47245 * 330.00400 * 18 16 14 22 22 C 1.53001 * 109.47157 * 119.99532 * 10 8 6 23 23 C 1.52998 * 117.50055 * 248.74454 * 22 10 8 24 24 C 1.53001 * 117.49587 * 180.08453 * 22 10 8 25 25 C 1.50700 * 109.47045 * 185.82613 * 4 3 2 26 26 C 1.38223 * 119.61653 * 274.99678 * 25 4 3 27 27 C 1.38633 * 119.16140 * 180.02562 * 26 25 4 28 28 C 1.38674 * 118.41810 * 0.02562 * 27 26 25 29 29 C 1.38182 * 119.16197 * 0.27214 * 28 27 26 30 30 N 1.31855 * 119.61834 * 95.02507 * 25 4 3 31 31 H 1.09006 * 109.46508 * 60.00140 * 1 2 3 32 32 H 1.09003 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47397 * 300.00688 * 1 2 3 34 34 H 1.08998 * 109.47397 * 239.99312 * 2 1 3 35 35 H 1.09006 * 109.46508 * 119.99859 * 2 1 3 36 36 H 1.09001 * 109.47160 * 64.89149 * 3 2 1 37 37 H 1.08998 * 109.46882 * 304.89097 * 3 2 1 38 38 H 1.08996 * 109.47423 * 84.66156 * 9 8 6 39 39 H 1.08994 * 109.47315 * 204.66910 * 9 8 6 40 40 H 1.09005 * 109.46530 * 324.66555 * 9 8 6 41 41 H 1.09003 * 109.46955 * 174.99892 * 12 10 8 42 42 H 1.08997 * 109.47482 * 295.00167 * 12 10 8 43 43 H 0.97003 * 120.00259 * 0.02562 * 13 12 10 44 44 H 0.96995 * 120.00582 * 179.97438 * 17 16 14 45 45 H 1.08998 * 115.55173 * 34.42384 * 22 10 8 46 46 H 1.09003 * 117.49766 * 0.02562 * 23 22 10 47 47 H 1.08999 * 117.49551 * 145.02132 * 23 22 10 48 48 H 1.09004 * 117.49648 * 214.97976 * 24 22 10 49 49 H 1.08999 * 117.50282 * 359.97438 * 24 22 10 50 50 H 1.07997 * 120.42005 * 0.02562 * 26 25 4 51 51 H 1.08002 * 120.79215 * 180.02562 * 27 26 25 52 52 H 1.08004 * 120.41554 * 180.02562 * 28 27 26 53 53 H 1.08003 * 119.61357 * 179.70299 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1230 5 1 3.9936 0.8198 0.6609 6 6 3.9609 0.9001 -1.4713 7 8 3.1901 0.9731 -2.4049 8 7 5.1715 0.3321 -1.6399 9 6 6.0591 0.1444 -0.4897 10 6 5.5997 -0.0976 -2.9734 11 1 4.8133 0.1214 -3.6957 12 6 5.8748 -1.6026 -2.9603 13 7 4.6898 -2.3114 -2.4707 14 6 4.7010 -3.6771 -2.3717 15 1 5.5837 -4.2318 -2.6543 16 6 3.5785 -4.3486 -1.9074 17 7 2.5030 -3.6728 -1.5625 18 14 3.5941 -6.2116 -1.7717 19 1 4.0809 -6.6059 -0.4253 20 1 2.2188 -6.7343 -1.9734 21 1 4.4951 -6.7759 -2.8085 22 6 6.8755 0.6507 -3.3651 23 6 6.7742 1.6758 -4.4963 24 6 7.4841 0.3407 -4.7342 25 6 4.0789 2.8537 0.0205 26 6 4.1183 3.6823 -1.0851 27 6 4.5932 4.9769 -0.9425 28 6 5.0133 5.3912 0.3125 29 6 4.9503 4.5045 1.3704 30 7 4.4864 3.2819 1.1992 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 1.7500 1.9304 0.9306 37 1 1.6069 1.9810 -0.8429 38 1 5.8038 -0.7853 0.0186 39 1 7.0929 0.0993 -0.8320 40 1 5.9411 0.9800 0.2004 41 1 6.1072 -1.9383 -3.9710 42 1 6.7200 -1.8119 -2.3047 43 1 3.8969 -1.8133 -2.2173 44 1 1.7185 -4.1420 -1.2384 45 1 7.5619 0.8698 -2.5472 46 1 5.7985 1.8175 -4.9612 47 1 7.3941 2.5693 -4.4227 48 1 8.5709 0.3564 -4.8170 49 1 6.9759 -0.3966 -5.3556 50 1 3.7832 3.3257 -2.0479 51 1 4.6351 5.6468 -1.7886 52 1 5.3888 6.3931 0.4602 53 1 5.2801 4.8180 2.3499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725465375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:08 Heat of formation + Delta-G solvation = 13.704442 kcal Electronic energy + Delta-G solvation = -32349.999423 eV Core-core repulsion = 28414.891485 eV Total energy + Delta-G solvation = -3935.107938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.95273 -40.65543 -38.95250 -36.63275 -36.34767 -35.77256 -33.68597 -33.29873 -32.93826 -30.37692 -29.60170 -27.79230 -26.37487 -25.63486 -24.48611 -23.95825 -23.18968 -22.88146 -22.40065 -20.99820 -19.99104 -19.12629 -18.58896 -17.89729 -17.56904 -17.00977 -16.61442 -16.38465 -16.22704 -15.97867 -15.66847 -15.38001 -15.25884 -15.00097 -14.78036 -14.58792 -14.31157 -14.25785 -14.00949 -13.83700 -13.67241 -13.28461 -13.20093 -13.11009 -12.89447 -12.81306 -12.72696 -12.53811 -12.40954 -12.22652 -12.11806 -12.09365 -11.83355 -11.76919 -11.57118 -11.34987 -10.99750 -10.90328 -10.82484 -10.72869 -10.40610 -9.90744 -9.57931 -8.96677 -7.89193 -5.19576 0.12041 0.35121 1.45352 1.47156 1.55402 1.58764 1.95030 2.55602 2.80016 2.88332 3.21923 3.42060 3.46722 3.61960 3.84163 3.89537 3.96974 4.00099 4.05445 4.09448 4.13786 4.17039 4.24049 4.26572 4.27712 4.33996 4.42369 4.45525 4.53231 4.60669 4.67070 4.70645 4.77219 4.77468 4.83536 4.84885 4.89263 4.90470 4.96314 5.02775 5.07148 5.20854 5.24848 5.26149 5.28230 5.28980 5.36653 5.48358 5.49429 5.64986 5.77373 6.28945 6.40876 7.01315 7.18831 7.36138 8.11534 8.36233 9.32356 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.004266 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.772364 B = 6562.698754 C = 8485.288154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.052 4.052 5 H 0.103 0.897 6 C 0.530 3.470 7 O -0.569 6.569 8 N -0.591 5.591 9 C 0.082 3.918 10 C 0.172 3.828 11 H 0.068 0.932 12 C 0.149 3.851 13 N -0.740 5.740 14 C -0.248 4.248 15 H 0.074 0.926 16 C -0.069 4.069 17 N -0.957 5.957 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.298 1.298 21 H -0.271 1.271 22 C -0.167 4.167 23 C -0.167 4.167 24 C -0.161 4.161 25 C 0.133 3.867 26 C -0.176 4.176 27 C -0.071 4.071 28 C -0.163 4.163 29 C 0.094 3.906 30 N -0.499 5.499 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.027 0.973 42 H 0.030 0.970 43 H 0.373 0.627 44 H 0.248 0.752 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.115 0.885 48 H 0.120 0.880 49 H 0.085 0.915 50 H 0.117 0.883 51 H 0.159 0.841 52 H 0.172 0.828 53 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 21.482 3.891 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.074 4.074 5 H 0.121 0.879 6 C 0.318 3.682 7 O -0.449 6.449 8 N -0.322 5.322 9 C -0.060 4.060 10 C 0.068 3.932 11 H 0.086 0.914 12 C 0.022 3.978 13 N -0.383 5.383 14 C -0.379 4.379 15 H 0.092 0.908 16 C -0.262 4.262 17 N -0.607 5.607 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.225 1.225 21 H -0.196 1.196 22 C -0.187 4.187 23 C -0.204 4.204 24 C -0.199 4.199 25 C -0.004 4.004 26 C -0.197 4.197 27 C -0.096 4.096 28 C -0.182 4.182 29 C -0.063 4.063 30 N -0.208 5.208 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.206 0.794 44 H 0.057 0.943 45 H 0.140 0.860 46 H 0.098 0.902 47 H 0.133 0.867 48 H 0.138 0.862 49 H 0.103 0.897 50 H 0.135 0.865 51 H 0.176 0.824 52 H 0.190 0.810 53 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.073 20.769 4.091 23.031 hybrid contribution -0.719 -1.009 -0.700 1.423 sum 8.354 19.760 3.391 21.720 Atomic orbital electron populations 1.21609 0.94560 1.01297 1.01956 1.21397 0.97288 0.95938 1.00957 1.21359 0.90866 0.97197 1.02566 1.20182 0.98544 0.93479 0.95177 0.87896 1.20480 0.80726 0.76903 0.90062 1.90654 1.51036 1.59207 1.43975 1.47638 1.16521 1.59169 1.08887 1.21816 0.95094 1.01303 0.87834 1.20671 0.95530 0.92855 0.84120 0.91379 1.21068 0.89852 0.90117 0.96797 1.42488 1.13718 1.03506 1.78599 1.19565 0.98497 0.84294 1.35583 0.90806 1.25513 0.96089 1.01924 1.02689 1.69861 1.04073 1.35413 1.51366 0.85204 0.76270 0.80783 0.77838 1.21335 1.22502 1.19613 1.22429 0.98260 1.04021 0.93955 1.23029 1.02147 0.93982 1.01266 1.23006 1.01118 0.98720 0.97020 1.20305 0.96255 0.94087 0.89722 1.22037 1.01931 0.96141 0.99550 1.21904 0.93942 0.94512 0.99278 1.22539 1.00315 1.02631 0.92757 1.23346 0.94119 0.87885 1.00984 1.67412 1.10896 1.18389 1.24103 0.93126 0.93757 0.90823 0.94703 0.92831 0.89697 0.91769 0.93825 0.88839 0.90328 0.95520 0.95179 0.79445 0.94302 0.86047 0.90243 0.86676 0.86209 0.89659 0.86528 0.82363 0.81008 0.79643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.12 -4.51 5.80 30.60 0.18 -4.34 16 3 C -0.08 -2.67 4.36 30.59 0.13 -2.54 16 4 C -0.05 -1.67 1.68 -12.29 -0.02 -1.70 16 5 H 0.10 3.39 6.78 -2.39 -0.02 3.37 16 6 C 0.53 20.01 4.46 87.66 0.39 20.40 16 7 O -0.57 -25.48 14.10 -3.04 -0.04 -25.53 16 8 N -0.59 -20.62 2.24 -822.59 -1.85 -22.47 16 9 C 0.08 2.41 8.89 127.77 1.14 3.55 16 10 C 0.17 6.12 2.41 44.99 0.11 6.23 16 11 H 0.07 2.87 6.67 -2.38 -0.02 2.85 16 12 C 0.15 6.22 5.32 86.38 0.46 6.68 16 13 N -0.74 -39.62 5.43 -343.45 -1.87 -41.49 16 14 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 15 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 17 N -0.96 -60.26 13.06 21.65 0.28 -59.98 16 18 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 22 C -0.17 -4.32 5.12 -10.79 -0.06 -4.38 16 23 C -0.17 -3.75 10.18 30.62 0.31 -3.44 16 24 C -0.16 -3.60 9.80 30.62 0.30 -3.30 16 25 C 0.13 3.65 5.16 42.55 0.22 3.87 16 26 C -0.18 -4.47 9.18 22.36 0.21 -4.26 16 27 C -0.07 -1.23 10.18 22.47 0.23 -1.00 16 28 C -0.16 -2.21 10.11 22.36 0.23 -1.99 16 29 C 0.09 1.59 11.18 84.67 0.95 2.53 16 30 N -0.50 -12.23 10.27 -183.89 -1.89 -14.12 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.03 1.68 6.85 -2.39 -0.02 1.67 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 2.20 7.65 -2.39 -0.02 2.18 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 2.26 6.50 -2.39 -0.02 2.25 16 40 H 0.08 2.06 6.20 -2.38 -0.01 2.05 16 41 H 0.03 1.13 7.48 -2.39 -0.02 1.11 16 42 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 43 H 0.37 21.94 7.07 -92.71 -0.66 21.28 16 44 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.12 2.73 6.66 -2.39 -0.02 2.72 16 46 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 47 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.12 2.06 8.14 -2.38 -0.02 2.05 16 49 H 0.08 2.15 7.66 -2.39 -0.02 2.13 16 50 H 0.12 3.45 6.74 -2.91 -0.02 3.43 16 51 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 52 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 53 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -74.82 422.81 3.69 -71.13 By element: Atomic # 1 Polarization: 47.27 SS G_CDS: 0.24 Total: 47.51 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.79 Total: -4.57 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -5.32 Total: -138.05 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.04 Total: -25.53 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -74.82 3.69 -71.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725465375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.831 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds