Wall clock time and date at job start Wed Apr 1 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47337 * 2 1 4 4 C 1.53002 * 109.47238 * 174.90577 * 3 2 1 5 5 H 1.09005 * 109.46809 * 305.21270 * 4 3 2 6 6 C 1.50695 * 109.47306 * 65.21436 * 4 3 2 7 7 O 1.21284 * 120.00037 * 44.77978 * 6 4 3 8 8 N 1.34783 * 120.00006 * 224.77673 * 6 4 3 9 9 C 1.46492 * 119.99912 * 355.00310 * 8 6 4 10 10 C 1.46504 * 119.99896 * 175.00236 * 8 6 4 11 11 H 1.08998 * 109.47150 * 359.97438 * 10 8 6 12 12 C 1.52999 * 109.47030 * 120.00072 * 10 8 6 13 13 N 1.46499 * 109.47248 * 304.99829 * 12 10 8 14 14 C 1.36934 * 119.99978 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00548 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00319 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00136 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47098 * 90.00206 * 18 16 14 20 20 H 1.48497 * 109.47641 * 210.00012 * 18 16 14 21 21 H 1.48499 * 109.46996 * 330.00393 * 18 16 14 22 22 C 1.52995 * 109.46956 * 240.00088 * 10 8 6 23 23 C 1.52999 * 117.50062 * 111.25515 * 22 10 8 24 24 C 1.53002 * 117.49719 * 179.91423 * 22 10 8 25 25 C 1.50700 * 109.47263 * 185.21659 * 4 3 2 26 26 C 1.38223 * 119.61915 * 274.99722 * 25 4 3 27 27 C 1.38632 * 119.16275 * 179.97438 * 26 25 4 28 28 C 1.38674 * 118.41716 * 0.02562 * 27 26 25 29 29 C 1.38172 * 119.16565 * 359.97438 * 28 27 26 30 30 N 1.31858 * 119.61876 * 94.72017 * 25 4 3 31 31 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46921 * 300.00053 * 1 2 3 33 33 H 1.08994 * 109.47504 * 59.99555 * 1 2 3 34 34 H 1.09005 * 109.46921 * 239.99947 * 2 1 3 35 35 H 1.09004 * 109.47515 * 119.99924 * 2 1 3 36 36 H 1.08995 * 109.47582 * 54.90225 * 3 2 1 37 37 H 1.09001 * 109.47333 * 294.89763 * 3 2 1 38 38 H 1.08998 * 109.47557 * 275.47233 * 9 8 6 39 39 H 1.09004 * 109.47553 * 35.47484 * 9 8 6 40 40 H 1.08997 * 109.47347 * 155.47452 * 9 8 6 41 41 H 1.08996 * 109.47177 * 64.99701 * 12 10 8 42 42 H 1.09000 * 109.47363 * 184.99880 * 12 10 8 43 43 H 0.96999 * 120.00177 * 0.02562 * 13 12 10 44 44 H 0.96994 * 119.99856 * 179.97438 * 17 16 14 45 45 H 1.09007 * 115.55108 * 325.58083 * 22 10 8 46 46 H 1.09000 * 117.49805 * 215.00119 * 23 22 10 47 47 H 1.09004 * 117.49589 * 0.02562 * 23 22 10 48 48 H 1.08998 * 117.50117 * 359.97438 * 24 22 10 49 49 H 1.09008 * 117.49557 * 144.99407 * 24 22 10 50 50 H 1.08005 * 120.41714 * 359.97438 * 26 25 4 51 51 H 1.07994 * 120.78892 * 180.02562 * 27 26 25 52 52 H 1.07998 * 120.41059 * 180.02562 * 28 27 26 53 53 H 1.08003 * 119.61711 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4443 0.1281 5 1 3.8556 0.8773 1.0124 6 6 4.1725 0.8114 -1.0970 7 8 3.7622 1.1072 -2.1993 8 7 5.1721 -0.0834 -0.9677 9 6 5.7418 -0.3593 0.3534 10 6 5.6888 -0.7801 -2.1484 11 1 5.1458 -0.4476 -3.0331 12 6 7.1770 -0.4665 -2.3149 13 7 7.3678 0.9852 -2.3633 14 6 8.6259 1.5059 -2.5084 15 1 9.4775 0.8465 -2.5876 16 6 8.8067 2.8815 -2.5537 17 7 10.0160 3.3821 -2.6937 18 14 7.3339 4.0222 -2.4159 19 1 7.0940 4.3506 -0.9876 20 1 7.6027 5.2714 -3.1725 21 1 6.1341 3.3515 -2.9779 22 6 5.5019 -2.2884 -1.9729 23 6 4.4819 -2.9838 -2.8767 24 6 5.9801 -3.1963 -3.1079 25 6 4.0562 2.8631 0.2569 26 6 4.2804 3.6144 -0.8814 27 6 4.7321 4.9187 -0.7519 28 6 4.9428 5.4205 0.5236 29 6 4.6968 4.6099 1.6152 30 7 4.2622 3.3751 1.4544 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6041 1.9820 0.8407 37 1 1.7532 1.9293 -0.9321 38 1 6.5071 0.3827 0.5812 39 1 4.9545 -0.3121 1.1058 40 1 6.1879 -1.3538 0.3562 41 1 7.7316 -0.8780 -1.4716 42 1 7.5408 -0.9118 -3.2409 43 1 6.6030 1.5775 -2.2917 44 1 10.1422 4.3433 -2.7257 45 1 5.6065 -2.6597 -0.9534 46 1 3.9154 -3.8125 -2.4518 47 1 3.9443 -2.3667 -3.5967 48 1 6.4274 -2.7189 -3.9797 49 1 6.3993 -4.1648 -2.8350 50 1 4.1059 3.1907 -1.8594 51 1 4.9154 5.5293 -1.6235 52 1 5.2939 6.4324 0.6619 53 1 4.8581 4.9934 2.6119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725465379.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:18 Heat of formation + Delta-G solvation = 21.064709 kcal Electronic energy + Delta-G solvation = -32826.215297 eV Core-core repulsion = 28891.426524 eV Total energy + Delta-G solvation = -3934.788773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.06723 -40.79333 -38.99730 -36.76252 -36.52235 -35.87882 -33.86471 -33.45746 -33.28981 -30.68739 -29.81373 -27.86078 -26.43480 -25.60572 -24.65319 -23.91898 -23.29313 -22.84076 -22.44463 -21.16289 -20.16411 -19.60372 -18.71208 -18.13605 -17.61430 -17.14406 -16.68848 -16.51725 -16.46215 -16.00804 -15.86746 -15.61479 -15.27561 -15.08056 -14.89079 -14.70687 -14.38594 -14.36206 -14.11547 -13.98834 -13.72027 -13.57753 -13.40358 -13.23655 -13.05466 -12.93600 -12.85158 -12.51122 -12.37351 -12.24640 -12.21233 -12.17324 -11.92745 -11.86642 -11.58148 -11.34131 -11.18205 -10.95178 -10.80826 -10.71443 -10.56385 -10.01989 -9.66964 -9.36564 -8.10242 -5.43108 -0.01235 0.14778 1.21798 1.25609 1.34108 1.43710 1.86559 2.38138 2.67174 2.86815 3.13350 3.19442 3.36081 3.45486 3.72323 3.80617 3.84272 3.90595 3.91926 3.97156 4.04764 4.08527 4.11716 4.17190 4.21549 4.25949 4.33164 4.40535 4.48693 4.53218 4.60554 4.70040 4.73201 4.77022 4.78017 4.84502 4.87981 4.92497 4.97085 5.01252 5.04448 5.05994 5.13791 5.20383 5.23554 5.29394 5.31858 5.41527 5.54684 5.61804 5.67840 6.12134 6.31571 6.83131 6.98542 7.06610 7.76479 7.94122 9.09160 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007468 B = 0.006694 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.389598 B = 4181.598644 C = 7119.453380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.053 4.053 5 H 0.130 0.870 6 C 0.522 3.478 7 O -0.571 6.571 8 N -0.594 5.594 9 C 0.070 3.930 10 C 0.167 3.833 11 H 0.073 0.927 12 C 0.149 3.851 13 N -0.755 5.755 14 C -0.227 4.227 15 H 0.064 0.936 16 C -0.060 4.060 17 N -0.978 5.978 18 Si 0.940 3.060 19 H -0.258 1.258 20 H -0.297 1.297 21 H -0.276 1.276 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.166 4.166 25 C 0.130 3.870 26 C -0.190 4.190 27 C -0.092 4.092 28 C -0.172 4.172 29 C 0.100 3.900 30 N -0.482 5.482 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.361 0.639 44 H 0.257 0.743 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.123 0.877 51 H 0.129 0.871 52 H 0.166 0.834 53 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.642 -8.481 11.273 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.075 4.075 5 H 0.148 0.852 6 C 0.310 3.690 7 O -0.451 6.451 8 N -0.325 5.325 9 C -0.071 4.071 10 C 0.064 3.936 11 H 0.091 0.909 12 C 0.022 3.978 13 N -0.401 5.401 14 C -0.358 4.358 15 H 0.082 0.918 16 C -0.251 4.251 17 N -0.628 5.628 18 Si 0.768 3.232 19 H -0.183 1.183 20 H -0.225 1.225 21 H -0.203 1.203 22 C -0.184 4.184 23 C -0.203 4.203 24 C -0.203 4.203 25 C -0.007 4.007 26 C -0.210 4.210 27 C -0.118 4.118 28 C -0.192 4.192 29 C -0.057 4.057 30 N -0.192 5.192 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.194 0.806 44 H 0.066 0.934 45 H 0.148 0.852 46 H 0.135 0.865 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.147 0.853 52 H 0.183 0.817 53 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.772 -8.879 11.420 23.698 hybrid contribution 0.230 1.916 -1.526 2.461 sum -18.542 -6.963 9.893 22.139 Atomic orbital electron populations 1.21709 0.94329 1.02391 1.01935 1.21509 0.97209 0.94750 1.02191 1.21492 0.89493 0.99204 1.02780 1.20357 0.98175 0.91183 0.97753 0.85212 1.20656 0.79231 0.78435 0.90636 1.90636 1.63363 1.62239 1.28854 1.47795 1.34540 1.40845 1.09281 1.22042 0.99465 1.02973 0.82664 1.20749 0.93329 0.91208 0.88362 0.90855 1.21117 0.94143 0.83368 0.99127 1.42700 1.04478 1.03135 1.89758 1.19065 0.85625 0.91097 1.40054 0.91767 1.25386 0.98570 0.98176 1.02984 1.69860 1.21717 1.11810 1.59458 0.85797 0.79776 0.78678 0.78926 1.18292 1.22455 1.20262 1.22434 1.06960 0.90682 0.98280 1.23040 0.92280 1.02929 1.02091 1.23021 0.97105 1.01080 0.99139 1.20615 0.96069 0.95478 0.88586 1.22287 1.01750 0.95999 1.00948 1.21784 0.95322 0.95349 0.99376 1.22507 1.00816 1.03274 0.92574 1.23362 0.93151 0.88504 1.00725 1.67442 1.12609 1.14546 1.24566 0.91529 0.91669 0.93553 0.93471 0.90078 0.89546 0.92645 0.94312 0.88297 0.88164 0.94229 0.94746 0.80647 0.93432 0.85195 0.86538 0.90279 0.89809 0.86283 0.85927 0.85332 0.81660 0.78563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.28 5.66 30.59 0.17 -2.11 16 3 C -0.09 -2.15 4.52 30.59 0.14 -2.02 16 4 C -0.05 -1.46 2.14 -12.29 -0.03 -1.49 16 5 H 0.13 2.97 5.51 -2.38 -0.01 2.96 16 6 C 0.52 17.30 4.74 87.65 0.42 17.72 16 7 O -0.57 -22.93 13.84 -3.04 -0.04 -22.98 16 8 N -0.59 -18.12 2.24 -822.61 -1.85 -19.96 16 9 C 0.07 1.70 9.26 127.77 1.18 2.88 16 10 C 0.17 5.38 2.41 44.99 0.11 5.48 16 11 H 0.07 2.78 6.67 -2.39 -0.02 2.77 16 12 C 0.15 5.87 5.32 86.38 0.46 6.33 16 13 N -0.76 -37.98 5.24 -343.46 -1.80 -39.78 16 14 C -0.23 -13.56 10.47 84.03 0.88 -12.68 16 15 H 0.06 4.09 8.06 -2.91 -0.02 4.07 16 16 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 17 N -0.98 -64.41 13.97 21.65 0.30 -64.10 16 18 Si 0.94 49.08 23.68 68.60 1.62 50.70 16 19 H -0.26 -12.63 5.91 99.48 0.59 -12.04 16 20 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 21 H -0.28 -14.48 6.10 99.48 0.61 -13.87 16 22 C -0.16 -3.75 5.12 -10.79 -0.06 -3.80 16 23 C -0.17 -3.36 10.18 30.62 0.31 -3.05 16 24 C -0.17 -3.43 9.80 30.62 0.30 -3.13 16 25 C 0.13 4.19 5.78 42.55 0.25 4.44 16 26 C -0.19 -6.98 7.79 22.36 0.17 -6.81 16 27 C -0.09 -3.11 6.91 22.47 0.16 -2.96 16 28 C -0.17 -4.70 10.08 22.36 0.23 -4.47 16 29 C 0.10 2.54 11.18 84.67 0.95 3.48 16 30 N -0.48 -14.14 10.27 -183.89 -1.89 -16.03 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 1.08 7.56 -2.38 -0.02 1.06 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.55 7.74 -2.39 -0.02 1.53 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.77 5.86 -2.38 -0.01 1.76 16 40 H 0.10 1.91 6.50 -2.39 -0.02 1.90 16 41 H 0.04 1.50 7.84 -2.39 -0.02 1.48 16 42 H 0.03 1.38 7.48 -2.39 -0.02 1.37 16 43 H 0.36 18.54 4.93 -92.71 -0.46 18.08 16 44 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 45 H 0.13 2.40 6.66 -2.38 -0.02 2.38 16 46 H 0.12 1.79 8.14 -2.39 -0.02 1.78 16 47 H 0.08 1.86 8.05 -2.38 -0.02 1.84 16 48 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16 49 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 50 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 51 H 0.13 4.16 7.30 -2.91 -0.02 4.13 16 52 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 53 H 0.20 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -78.60 408.18 3.39 -75.20 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: 0.23 Total: 43.95 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 6.82 Total: -7.00 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -5.23 Total: -139.88 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.98 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.62 Total: 50.70 kcal Total: -78.60 3.39 -75.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725465379.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.268 kcal (2) G-P(sol) polarization free energy of solvation -78.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds