Wall clock time and date at job start Wed Apr 1 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46763 * 2 1 4 4 C 1.53002 * 109.46763 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47364 * 305.70100 * 4 3 2 6 6 C 1.50702 * 109.46783 * 185.70629 * 4 3 2 7 7 O 1.21283 * 120.00435 * 334.85829 * 6 4 3 8 8 N 1.34785 * 119.99880 * 154.85626 * 6 4 3 9 9 C 1.47020 * 125.64695 * 5.00905 * 8 6 4 10 10 C 1.54322 * 107.26797 * 181.02583 * 9 8 6 11 11 H 1.09000 * 110.71687 * 140.73828 * 10 9 8 12 12 N 1.46506 * 110.71931 * 263.82786 * 10 9 8 13 13 C 1.36933 * 119.99887 * 273.55054 * 12 10 9 14 14 H 1.07999 * 120.00604 * 359.97438 * 13 12 10 15 15 C 1.38816 * 119.99905 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99791 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00214 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46642 * 90.00454 * 17 15 13 19 19 H 1.48501 * 109.47156 * 210.00194 * 17 15 13 20 20 H 1.48499 * 109.47225 * 330.00358 * 17 15 13 21 21 C 1.55150 * 102.94614 * 22.19393 * 10 9 8 22 22 C 1.53001 * 111.00693 * 82.57346 * 21 10 9 23 23 C 1.52995 * 111.00485 * 206.38850 * 21 10 9 24 24 C 1.47422 * 125.64560 * 184.70583 * 8 6 4 25 25 C 1.50695 * 109.47402 * 65.71123 * 4 3 2 26 26 C 1.38227 * 119.62313 * 84.99781 * 25 4 3 27 27 C 1.38623 * 119.16172 * 179.97438 * 26 25 4 28 28 C 1.38672 * 118.42347 * 359.97438 * 27 26 25 29 29 C 1.38177 * 119.16266 * 359.97438 * 28 27 26 30 30 N 1.31855 * 119.61487 * 264.72217 * 25 4 3 31 31 H 1.09000 * 109.46694 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46913 * 300.00243 * 1 2 3 33 33 H 1.09001 * 109.47116 * 60.00412 * 1 2 3 34 34 H 1.08997 * 109.47546 * 240.00165 * 2 1 3 35 35 H 1.09001 * 109.47116 * 119.99588 * 2 1 3 36 36 H 1.08998 * 109.47604 * 60.00180 * 3 2 1 37 37 H 1.09001 * 109.46968 * 299.99678 * 3 2 1 38 38 H 1.08997 * 109.88308 * 300.44425 * 9 8 6 39 39 H 1.08994 * 109.88234 * 61.45367 * 9 8 6 40 40 H 0.97004 * 119.99875 * 93.54583 * 12 10 9 41 41 H 0.97003 * 120.00255 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.46970 * 59.99557 * 22 21 10 43 43 H 1.09000 * 109.47363 * 180.02562 * 22 21 10 44 44 H 1.09005 * 109.46938 * 300.00271 * 22 21 10 45 45 H 1.08996 * 109.47619 * 59.99946 * 23 21 10 46 46 H 1.09000 * 109.47161 * 180.02562 * 23 21 10 47 47 H 1.09006 * 109.47063 * 299.99524 * 23 21 10 48 48 H 1.09002 * 110.36660 * 274.74211 * 24 8 6 49 49 H 1.08998 * 110.36900 * 37.06814 * 24 8 6 50 50 H 1.07997 * 120.41819 * 359.97438 * 26 25 4 51 51 H 1.08001 * 120.79178 * 180.02562 * 27 26 25 52 52 H 1.07998 * 120.42030 * 180.02562 * 28 27 26 53 53 H 1.08003 * 119.62194 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8428 0.8336 6 6 4.0723 2.8564 0.1406 7 8 3.3778 3.7851 -0.2146 8 7 5.2934 3.0888 0.6618 9 6 6.2758 2.0605 1.0345 10 6 7.5082 2.7909 1.6082 11 1 7.9158 2.2480 2.4610 12 7 8.5308 2.9721 0.5749 13 6 9.4460 1.9819 0.3362 14 1 9.4144 1.0675 0.9099 15 6 10.4146 2.1535 -0.6433 16 7 10.4536 3.2681 -1.3422 17 14 11.6636 0.8030 -0.9684 18 1 11.1351 -0.1211 -2.0038 19 1 12.9332 1.4075 -1.4461 20 1 11.9154 0.0491 0.2859 21 6 6.9264 4.1594 2.0508 22 6 6.2732 4.0573 3.4306 23 6 8.0051 5.2442 2.0369 24 6 5.8674 4.4164 0.9467 25 6 4.0718 0.8584 -1.2959 26 6 4.2003 1.6703 -2.4072 27 6 4.6634 1.1230 -3.5937 28 6 4.9818 -0.2264 -3.6181 29 6 4.8286 -0.9754 -2.4671 30 7 4.3884 -0.4203 -1.3546 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 5.8517 1.3992 1.7902 39 1 6.5602 1.4834 0.1548 40 1 8.5595 3.7936 0.0597 41 1 11.1306 3.3882 -2.0264 42 1 7.0167 3.7406 4.1620 43 1 5.8734 5.0302 3.7162 44 1 5.4638 3.3280 3.3963 45 1 8.4064 5.3448 1.0285 46 1 7.5704 6.1929 2.3517 47 1 8.8073 4.9678 2.7213 48 1 6.3392 4.8254 0.0532 49 1 5.0952 5.0931 1.3125 50 1 3.9433 2.7177 -2.3518 51 1 4.7743 1.7332 -4.4778 52 1 5.3458 -0.6861 -4.5251 53 1 5.0740 -2.0271 -2.4779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725673187.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:04 Heat of formation + Delta-G solvation = -16.771566 kcal Electronic energy + Delta-G solvation = -32226.077845 eV Core-core repulsion = 28289.648368 eV Total energy + Delta-G solvation = -3936.429477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.97586 -40.87342 -39.43119 -36.62883 -35.74800 -34.65308 -33.46636 -33.14664 -32.61639 -30.29787 -29.48041 -28.04167 -27.79801 -25.86749 -25.42382 -24.58508 -23.65378 -22.95598 -21.83045 -20.39851 -19.91037 -19.11360 -18.14435 -18.06876 -17.35524 -17.02639 -16.67178 -16.39137 -16.09618 -15.93378 -15.80011 -15.47807 -15.17201 -14.86803 -14.59109 -14.46168 -14.24463 -14.07049 -13.82097 -13.79564 -13.54836 -13.31650 -13.24001 -13.06503 -12.93771 -12.83178 -12.76712 -12.70875 -12.40859 -12.23839 -12.18063 -12.07279 -11.93851 -11.82010 -11.57100 -11.47155 -11.29413 -11.03060 -10.89682 -10.82124 -10.47495 -9.95438 -9.67480 -9.02066 -7.93312 -5.21418 0.08459 0.28731 1.43456 1.47476 1.47673 1.56035 1.94258 2.55788 2.76802 3.16343 3.32861 3.37850 3.58227 3.78490 3.82468 3.85850 3.87152 3.93015 4.02572 4.05051 4.14255 4.19005 4.26230 4.29720 4.38801 4.45785 4.58031 4.59260 4.62161 4.67953 4.72340 4.78031 4.80740 4.87894 4.89641 4.91011 4.99638 5.02032 5.08433 5.08995 5.13849 5.20773 5.22828 5.26680 5.31357 5.33207 5.39774 5.46245 5.52590 5.59388 5.71186 6.27599 6.48594 6.94591 7.02959 7.35499 8.09001 8.32624 9.29717 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.004424 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.735690 B = 6327.033354 C = 8342.518549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.086 4.086 4 C -0.047 4.047 5 H 0.114 0.886 6 C 0.534 3.466 7 O -0.574 6.574 8 N -0.600 5.600 9 C 0.088 3.912 10 C 0.171 3.829 11 H 0.078 0.922 12 N -0.721 5.721 13 C -0.235 4.235 14 H 0.078 0.922 15 C -0.068 4.068 16 N -0.967 5.967 17 Si 0.963 3.037 18 H -0.292 1.292 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.075 4.075 22 C -0.122 4.122 23 C -0.119 4.119 24 C 0.121 3.879 25 C 0.136 3.864 26 C -0.184 4.184 27 C -0.079 4.079 28 C -0.171 4.171 29 C 0.093 3.907 30 N -0.487 5.487 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.375 0.625 41 H 0.249 0.751 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.081 0.919 50 H 0.117 0.883 51 H 0.150 0.850 52 H 0.165 0.835 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 -5.735 4.055 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.125 4.125 4 C -0.069 4.069 5 H 0.132 0.868 6 C 0.323 3.677 7 O -0.454 6.454 8 N -0.332 5.332 9 C -0.038 4.038 10 C 0.060 3.940 11 H 0.096 0.904 12 N -0.361 5.361 13 C -0.367 4.367 14 H 0.095 0.905 15 C -0.261 4.261 16 N -0.617 5.617 17 Si 0.793 3.207 18 H -0.219 1.219 19 H -0.226 1.226 20 H -0.192 1.192 21 C -0.077 4.077 22 C -0.180 4.180 23 C -0.177 4.177 24 C -0.002 4.002 25 C -0.001 4.001 26 C -0.204 4.204 27 C -0.105 4.105 28 C -0.191 4.191 29 C -0.064 4.064 30 N -0.196 5.196 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.209 0.791 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.135 0.865 51 H 0.168 0.832 52 H 0.182 0.818 53 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -16.406 -5.941 4.614 18.049 hybrid contribution 1.292 0.430 -1.859 2.305 sum -15.114 -5.511 2.755 16.322 Atomic orbital electron populations 1.21739 0.94520 1.02228 1.02003 1.21447 0.96596 0.94759 1.02350 1.21391 0.89547 0.98457 1.03077 1.20208 0.98641 0.91772 0.96268 0.86846 1.20340 0.79884 0.91296 0.76196 1.90645 1.57369 1.46533 1.50851 1.48475 1.14374 1.08924 1.61390 1.22988 0.90256 0.91134 0.99410 1.21469 0.87045 0.94287 0.91160 0.90428 1.42579 1.32887 1.19077 1.41559 1.19577 1.06020 0.96914 1.14202 0.90453 1.25422 1.01777 0.99324 0.99548 1.69813 1.37762 1.27247 1.26897 0.85284 0.78500 0.78806 0.78070 1.21927 1.22596 1.19187 1.22006 0.94608 0.95493 0.95570 1.21641 1.00389 1.02693 0.93257 1.21504 0.97395 0.97408 1.01394 1.22305 0.95788 0.84837 0.97257 1.20498 0.95692 0.90064 0.93865 1.22046 1.02384 1.01066 0.94948 1.21877 0.94381 0.96207 0.98047 1.22490 1.00720 0.94448 1.01405 1.23290 0.93851 1.01658 0.87608 1.67438 1.11428 1.11545 1.29182 0.91713 0.91965 0.93164 0.92963 0.91116 0.90383 0.92263 0.89961 0.94020 0.79136 0.94260 0.91086 0.90977 0.92480 0.94517 0.90927 0.92334 0.94030 0.90068 0.86499 0.83226 0.81752 0.79750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.11 -2.38 5.73 30.60 0.18 -2.20 16 3 C -0.09 -2.14 4.10 30.60 0.13 -2.01 16 4 C -0.05 -1.35 1.97 -12.29 -0.02 -1.37 16 5 H 0.11 3.07 7.27 -2.39 -0.02 3.05 16 6 C 0.53 18.04 5.76 87.66 0.50 18.54 16 7 O -0.57 -22.00 15.89 -3.04 -0.05 -22.05 16 8 N -0.60 -20.27 3.31 -811.35 -2.69 -22.96 16 9 C 0.09 3.02 5.74 86.73 0.50 3.52 16 10 C 0.17 6.18 2.86 46.18 0.13 6.32 16 11 H 0.08 2.72 8.03 -2.39 -0.02 2.70 16 12 N -0.72 -34.02 4.61 -317.33 -1.46 -35.49 16 13 C -0.24 -12.37 9.98 84.04 0.84 -11.53 16 14 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 15 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 16 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 17 Si 0.96 45.00 29.55 68.60 2.03 47.02 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 C -0.08 -2.26 0.83 -50.71 -0.04 -2.30 16 22 C -0.12 -2.78 8.59 71.98 0.62 -2.16 16 23 C -0.12 -3.69 8.22 71.98 0.59 -3.09 16 24 C 0.12 4.00 5.81 86.93 0.50 4.51 16 25 C 0.14 4.19 5.00 42.55 0.21 4.40 16 26 C -0.18 -5.89 9.18 22.36 0.21 -5.69 16 27 C -0.08 -2.17 10.18 22.47 0.23 -1.94 16 28 C -0.17 -4.05 10.11 22.36 0.23 -3.82 16 29 C 0.09 2.30 11.18 84.67 0.95 3.25 16 30 N -0.49 -14.19 9.64 -183.89 -1.77 -15.96 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 1.23 6.92 -2.39 -0.02 1.21 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16 38 H 0.08 2.38 7.69 -2.39 -0.02 2.36 16 39 H 0.04 1.73 8.05 -2.39 -0.02 1.71 16 40 H 0.37 19.44 6.10 -92.71 -0.57 18.87 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.27 7.91 -2.38 -0.02 1.26 16 45 H 0.04 1.37 6.38 -2.39 -0.02 1.36 16 46 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.04 1.60 7.99 -2.39 -0.02 1.58 16 49 H 0.08 2.51 8.00 -2.39 -0.02 2.49 16 50 H 0.12 4.08 6.75 -2.91 -0.02 4.06 16 51 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 52 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 53 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -66.85 420.75 3.58 -63.28 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: 0.31 Total: 44.28 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.92 Total: -0.68 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -5.64 Total: -131.85 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.85 3.58 -63.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725673187.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.504 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds