Wall clock time and date at job start Wed Apr 1 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47496 * 2 1 4 4 C 1.52997 * 109.47577 * 184.62695 * 3 2 1 5 5 H 1.08997 * 109.47189 * 305.75656 * 4 3 2 6 6 C 1.50703 * 109.46879 * 65.75562 * 4 3 2 7 7 O 1.21281 * 120.00255 * 33.44663 * 6 4 3 8 8 N 1.34781 * 119.99943 * 213.44488 * 6 4 3 9 9 C 1.47025 * 125.64530 * 355.31312 * 8 6 4 10 10 C 1.54329 * 107.26635 * 181.02383 * 9 8 6 11 11 H 1.08997 * 110.72194 * 263.83310 * 10 9 8 12 12 N 1.46505 * 110.71816 * 140.73825 * 10 9 8 13 13 C 1.36932 * 120.00016 * 86.45102 * 12 10 9 14 14 H 1.07997 * 119.99944 * 0.02562 * 13 12 10 15 15 C 1.38820 * 119.99913 * 179.97438 * 13 12 10 16 16 N 1.31615 * 119.99879 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99831 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47355 * 60.00422 * 17 15 13 19 19 H 1.48507 * 109.47024 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47561 * 299.99939 * 17 15 13 21 21 C 1.55154 * 102.94427 * 22.19863 * 10 9 8 22 22 C 1.52994 * 111.00692 * 82.56761 * 21 10 9 23 23 C 1.53006 * 111.00550 * 206.38611 * 21 10 9 24 24 C 1.47418 * 125.64856 * 175.01169 * 8 6 4 25 25 C 1.50700 * 109.47400 * 185.75460 * 4 3 2 26 26 C 1.38227 * 119.62110 * 274.99939 * 25 4 3 27 27 C 1.38623 * 119.15925 * 179.97438 * 26 25 4 28 28 C 1.38672 * 118.42434 * 0.25892 * 27 26 25 29 29 C 1.38187 * 119.16153 * 359.51799 * 28 27 26 30 30 N 1.31862 * 119.61461 * 95.02507 * 25 4 3 31 31 H 1.08995 * 109.47640 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46828 * 300.00537 * 1 2 3 33 33 H 1.08995 * 109.46843 * 60.00134 * 1 2 3 34 34 H 1.08998 * 109.47295 * 239.99504 * 2 1 3 35 35 H 1.09000 * 109.47132 * 119.99497 * 2 1 3 36 36 H 1.09003 * 109.47684 * 64.62097 * 3 2 1 37 37 H 1.09004 * 109.46921 * 304.62921 * 3 2 1 38 38 H 1.08997 * 109.88289 * 300.44131 * 9 8 6 39 39 H 1.08994 * 109.88065 * 61.61114 * 9 8 6 40 40 H 0.96997 * 119.99543 * 266.45615 * 12 10 9 41 41 H 0.97001 * 120.00384 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.46993 * 60.00168 * 22 21 10 43 43 H 1.08999 * 109.47352 * 179.97438 * 22 21 10 44 44 H 1.08997 * 109.47272 * 300.00081 * 22 21 10 45 45 H 1.08995 * 109.46682 * 59.99504 * 23 21 10 46 46 H 1.08997 * 109.47236 * 179.97438 * 23 21 10 47 47 H 1.09004 * 109.46687 * 300.00066 * 23 21 10 48 48 H 1.09003 * 110.36784 * 274.74176 * 24 8 6 49 49 H 1.08994 * 110.37054 * 37.06818 * 24 8 6 50 50 H 1.08000 * 120.42086 * 0.02562 * 26 25 4 51 51 H 1.08005 * 120.78885 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.41923 * 179.74761 * 28 27 26 53 53 H 1.07996 * 119.61591 * 180.25531 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5656 1.4440 -0.1164 5 1 3.9907 0.8217 0.6711 6 6 3.9673 0.8961 -1.4616 7 8 3.2672 1.0961 -2.4315 8 7 5.1047 0.1839 -1.5868 9 6 6.0908 -0.0501 -0.5217 10 6 7.2323 -0.8911 -1.1310 11 1 7.0836 -1.9509 -0.9238 12 7 8.5325 -0.4436 -0.6254 13 6 9.0214 -0.9496 0.5493 14 1 8.4487 -1.6788 1.1030 15 6 10.2537 -0.5259 1.0280 16 7 10.9518 0.3625 0.3530 17 14 10.9209 -1.2167 2.6302 18 1 11.0697 -2.6894 2.5105 19 1 12.2444 -0.6078 2.9186 20 1 9.9796 -0.9024 3.7349 21 6 7.1018 -0.6053 -2.6503 22 6 7.7931 0.7078 -3.0227 23 6 7.6566 -1.7674 -3.4767 24 6 5.5630 -0.4946 -2.8127 25 6 4.0788 2.8538 0.0254 26 6 4.1229 3.6795 -1.0822 27 6 4.5962 4.9747 -0.9408 28 6 5.0145 5.3913 0.3140 29 6 4.9367 4.5110 1.3763 30 7 4.4811 3.2853 1.2047 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.7460 1.9319 0.9285 37 1 1.6106 1.9796 -0.8456 38 1 6.4823 0.9019 -0.1632 39 1 5.6265 -0.5954 0.3000 40 1 9.0470 0.2111 -1.1229 41 1 11.8130 0.6583 0.6872 42 1 8.8512 0.6462 -2.7684 43 1 7.6868 0.8836 -4.0932 44 1 7.3343 1.5289 -2.4720 45 1 7.1023 -2.6763 -3.2432 46 1 7.5523 -1.5410 -4.5378 47 1 8.7101 -1.9127 -3.2376 48 1 5.1149 -1.4854 -2.8880 49 1 5.3166 0.1018 -3.6911 50 1 3.7920 3.3204 -2.0455 51 1 4.6425 5.6421 -1.7887 52 1 5.3928 6.3922 0.4599 53 1 5.2566 4.8290 2.3575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725673189.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:14 Heat of formation + Delta-G solvation = -16.548221 kcal Electronic energy + Delta-G solvation = -32066.164682 eV Core-core repulsion = 28129.744891 eV Total energy + Delta-G solvation = -3936.419792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.98384 -40.87175 -39.48709 -36.49469 -35.86402 -34.64333 -33.62609 -33.22505 -32.66276 -30.22649 -29.18657 -28.33870 -27.77245 -25.87358 -25.63279 -24.56608 -23.50421 -22.72557 -22.25638 -20.32340 -19.81920 -19.14985 -18.42700 -18.00517 -17.24824 -16.99622 -16.73600 -16.32002 -16.22044 -15.93521 -15.74432 -15.29806 -15.14673 -15.08714 -14.48034 -14.36270 -14.32582 -14.24723 -14.03297 -13.82134 -13.51251 -13.41778 -13.27958 -12.99750 -12.90809 -12.82171 -12.80680 -12.61786 -12.55942 -12.24777 -12.15075 -12.07634 -11.90439 -11.86546 -11.61403 -11.52042 -11.32640 -11.00840 -10.88496 -10.85119 -10.46888 -9.96938 -9.66960 -9.04212 -7.93477 -5.22310 0.06501 0.28878 1.44307 1.49481 1.51109 1.56696 1.90591 2.57233 2.74822 3.14622 3.31538 3.37642 3.59759 3.77670 3.79216 3.82595 3.87303 3.94175 4.02809 4.11966 4.15108 4.19748 4.20423 4.26412 4.35532 4.40730 4.42218 4.57443 4.61858 4.66881 4.75255 4.76948 4.78148 4.82422 4.85186 4.88665 4.97369 4.99817 5.06057 5.10015 5.13877 5.17998 5.20286 5.21068 5.26827 5.31141 5.39517 5.40465 5.50408 5.54790 5.71008 6.27711 6.44209 6.95566 7.03345 7.36192 8.08489 8.32957 9.29407 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.003910 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.519461 B = 7159.099126 C = 8105.674137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.053 4.053 5 H 0.099 0.901 6 C 0.543 3.457 7 O -0.563 6.563 8 N -0.607 5.607 9 C 0.092 3.908 10 C 0.174 3.826 11 H 0.070 0.930 12 N -0.721 5.721 13 C -0.242 4.242 14 H 0.077 0.923 15 C -0.067 4.067 16 N -0.967 5.967 17 Si 0.966 3.034 18 H -0.277 1.277 19 H -0.298 1.298 20 H -0.281 1.281 21 C -0.077 4.077 22 C -0.123 4.123 23 C -0.124 4.124 24 C 0.120 3.880 25 C 0.125 3.875 26 C -0.180 4.180 27 C -0.075 4.075 28 C -0.168 4.168 29 C 0.088 3.912 30 N -0.503 5.503 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.380 0.620 41 H 0.250 0.750 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.130 0.870 51 H 0.162 0.838 52 H 0.170 0.830 53 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 4.684 -4.101 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.125 4.125 4 C -0.075 4.075 5 H 0.117 0.883 6 C 0.332 3.668 7 O -0.443 6.443 8 N -0.339 5.339 9 C -0.035 4.035 10 C 0.063 3.937 11 H 0.088 0.912 12 N -0.362 5.362 13 C -0.374 4.374 14 H 0.095 0.905 15 C -0.259 4.259 16 N -0.617 5.617 17 Si 0.795 3.205 18 H -0.203 1.203 19 H -0.225 1.225 20 H -0.207 1.207 21 C -0.079 4.079 22 C -0.181 4.181 23 C -0.181 4.181 24 C -0.003 4.003 25 C -0.012 4.012 26 C -0.200 4.200 27 C -0.101 4.101 28 C -0.188 4.188 29 C -0.069 4.069 30 N -0.212 5.212 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.215 0.785 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.148 0.852 51 H 0.179 0.821 52 H 0.187 0.813 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.306 4.157 -3.726 18.184 hybrid contribution 1.160 0.656 0.261 1.358 sum -16.146 4.813 -3.465 17.200 Atomic orbital electron populations 1.21693 0.94029 1.02334 1.02112 1.21523 0.97534 0.95330 1.01644 1.21431 0.89521 0.98690 1.02875 1.20222 0.99254 0.92675 0.95351 0.88258 1.20074 0.79300 0.77062 0.90379 1.90631 1.53145 1.59909 1.40599 1.48511 1.20618 1.50871 1.13868 1.22924 0.90140 1.00043 0.90345 1.21401 0.84411 0.96087 0.91790 0.91211 1.42621 1.17752 1.50606 1.25182 1.19581 1.00607 1.18306 0.98875 0.90474 1.25444 0.98134 1.00330 1.02026 1.69792 1.14496 1.36074 1.41308 0.85331 0.76978 0.77974 0.80199 1.20295 1.22474 1.20685 1.21965 0.93690 0.97024 0.95183 1.21538 0.99808 0.95514 1.01196 1.21610 1.00741 0.96254 0.99501 1.22436 0.92824 0.97635 0.87363 1.20587 0.96066 0.95050 0.89530 1.22167 1.01961 0.95910 0.99956 1.21956 0.93997 0.95100 0.99004 1.22533 1.00397 1.02737 0.93088 1.23269 0.94414 0.88205 1.01000 1.67398 1.10984 1.17710 1.25110 0.91780 0.91833 0.92864 0.93357 0.91401 0.90306 0.91250 0.93920 0.91746 0.78459 0.94086 0.93386 0.90773 0.94803 0.91232 0.90672 0.93460 0.89632 0.90362 0.85175 0.82085 0.81287 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.73 5.82 30.59 0.18 -2.55 16 3 C -0.09 -2.15 4.41 30.59 0.14 -2.01 16 4 C -0.05 -1.55 2.12 -12.29 -0.03 -1.57 16 5 H 0.10 3.03 7.01 -2.39 -0.02 3.01 16 6 C 0.54 17.19 4.92 87.66 0.43 17.62 16 7 O -0.56 -19.43 15.03 -3.03 -0.05 -19.48 16 8 N -0.61 -19.17 3.31 -811.34 -2.69 -21.86 16 9 C 0.09 3.26 5.60 86.73 0.49 3.75 16 10 C 0.17 6.45 2.84 46.18 0.13 6.58 16 11 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 12 N -0.72 -34.16 5.08 -317.32 -1.61 -35.77 16 13 C -0.24 -12.77 9.98 84.04 0.84 -11.93 16 14 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 15 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 16 N -0.97 -57.37 13.06 21.65 0.28 -57.09 16 17 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 C -0.08 -2.35 0.87 -50.71 -0.04 -2.40 16 22 C -0.12 -4.03 7.95 71.98 0.57 -3.46 16 23 C -0.12 -3.24 8.68 71.98 0.62 -2.61 16 24 C 0.12 3.36 5.87 86.94 0.51 3.87 16 25 C 0.13 3.80 5.78 42.55 0.25 4.05 16 26 C -0.18 -5.08 9.18 22.36 0.21 -4.87 16 27 C -0.07 -1.69 10.18 22.47 0.23 -1.46 16 28 C -0.17 -3.48 10.11 22.36 0.23 -3.26 16 29 C 0.09 2.18 11.18 84.67 0.95 3.13 16 30 N -0.50 -15.45 10.27 -183.88 -1.89 -17.34 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.23 7.12 -2.39 -0.02 1.21 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.81 7.65 -2.39 -0.02 1.80 16 38 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 39 H 0.06 2.20 7.73 -2.39 -0.02 2.18 16 40 H 0.38 19.42 5.28 -92.71 -0.49 18.93 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.05 1.81 6.35 -2.39 -0.02 1.80 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.03 1.20 7.91 -2.39 -0.02 1.19 16 45 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 48 H 0.09 2.12 7.99 -2.39 -0.02 2.10 16 49 H 0.08 2.18 7.91 -2.39 -0.02 2.16 16 50 H 0.13 3.86 6.39 -2.91 -0.02 3.84 16 51 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 52 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 53 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -66.13 419.45 3.34 -62.79 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: 0.39 Total: 43.97 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 6.87 Total: -2.23 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -5.90 Total: -132.06 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.13 3.34 -62.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725673189.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.238 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds