Wall clock time and date at job start Wed Apr 1 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46900 * 2 1 4 4 C 1.52998 * 109.47452 * 119.99891 * 2 1 3 5 5 H 1.08997 * 109.46948 * 297.17013 * 4 2 1 6 6 C 1.50700 * 109.46901 * 177.16965 * 4 2 1 7 7 O 1.21279 * 120.00252 * 330.91714 * 6 4 2 8 8 N 1.34778 * 119.99520 * 150.91469 * 6 4 2 9 9 C 1.46930 * 120.63390 * 5.81423 * 8 6 4 10 10 C 1.53191 * 108.77383 * 126.41043 * 9 8 6 11 11 C 1.53043 * 109.31209 * 54.63969 * 10 9 8 12 12 C 1.53039 * 109.53683 * 298.63223 * 11 10 9 13 13 C 1.46931 * 120.62914 * 185.83891 * 8 6 4 14 14 H 1.08999 * 109.58721 * 113.65650 * 13 8 6 15 15 C 1.52997 * 109.58522 * 353.37213 * 13 8 6 16 16 N 1.46498 * 109.47143 * 67.61608 * 15 13 8 17 17 C 1.36938 * 120.00190 * 174.90137 * 16 15 13 18 18 H 1.07996 * 120.00021 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00043 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47065 * 59.99956 * 21 19 17 23 23 H 1.48497 * 109.46930 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46827 * 299.99907 * 21 19 17 25 25 C 1.50703 * 109.46983 * 57.17245 * 4 2 1 26 26 C 1.38673 * 120.41551 * 240.00032 * 25 4 2 27 27 C 1.38629 * 118.41559 * 180.02562 * 26 25 4 28 28 C 1.38228 * 119.16479 * 359.97438 * 27 26 25 29 29 N 1.31852 * 120.75895 * 0.02562 * 28 27 26 30 30 C 1.31888 * 121.73051 * 359.70572 * 29 28 27 31 31 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46969 * 299.99586 * 1 2 3 33 33 H 1.09000 * 109.47381 * 59.99844 * 1 2 3 34 34 H 1.09004 * 109.46969 * 240.00414 * 2 1 3 35 35 H 1.08996 * 109.47158 * 184.56673 * 3 2 1 36 36 H 1.08999 * 109.46825 * 304.56405 * 3 2 1 37 37 H 1.09001 * 109.46971 * 64.56520 * 3 2 1 38 38 H 1.08992 * 109.58601 * 246.19906 * 9 8 6 39 39 H 1.09001 * 109.58326 * 6.48549 * 9 8 6 40 40 H 1.09001 * 109.49447 * 174.58454 * 10 9 8 41 41 H 1.08994 * 109.50001 * 294.65741 * 10 9 8 42 42 H 1.08994 * 109.46200 * 58.64977 * 11 10 9 43 43 H 1.08998 * 109.46153 * 178.62562 * 11 10 9 44 44 H 1.09001 * 109.49932 * 301.41047 * 12 11 10 45 45 H 1.09002 * 109.50181 * 181.31881 * 12 11 10 46 46 H 1.09002 * 109.47285 * 187.61125 * 15 13 8 47 47 H 1.08997 * 109.47346 * 307.61382 * 15 13 8 48 48 H 0.96999 * 120.00176 * 354.90322 * 16 15 13 49 49 H 0.97001 * 120.00081 * 180.02562 * 20 19 17 50 50 H 1.07996 * 120.79257 * 0.02562 * 26 25 4 51 51 H 1.08000 * 120.41327 * 180.02562 * 27 26 25 52 52 H 1.07997 * 119.61603 * 180.02562 * 28 27 26 53 53 H 1.07999 * 119.61990 * 180.30812 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7188 -0.1789 2.1384 6 6 3.5454 -0.7822 1.2145 7 8 4.1270 -0.8067 0.1505 8 7 4.2454 -0.8094 2.3660 9 6 3.5554 -0.9083 3.6594 10 6 4.1369 -2.0919 4.4391 11 6 5.6549 -1.9299 4.5473 12 6 6.2703 -1.9255 3.1461 13 6 5.7130 -0.7401 2.3517 14 1 6.0392 0.1943 2.8084 15 6 6.2156 -0.8083 0.9082 16 7 5.8190 0.4083 0.1950 17 6 6.2483 0.6207 -1.0879 18 1 6.8789 -0.1089 -1.5741 19 6 5.8729 1.7738 -1.7635 20 7 5.1047 2.6632 -1.1708 21 14 6.4579 2.0631 -3.5138 22 1 5.9740 0.9628 -4.3857 23 1 5.9231 3.3578 -4.0068 24 1 7.9422 2.0992 -3.5399 25 6 1.4813 -2.1204 1.2848 26 6 0.6904 -2.5337 2.3462 27 6 0.1986 -3.8298 2.3369 28 6 0.5104 -4.6610 1.2773 29 7 1.2658 -4.2337 0.2846 30 6 1.7465 -3.0058 0.2577 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 3.1269 1.4437 -0.0818 36 1 1.6114 1.9794 -0.8463 37 1 1.7449 1.9322 0.9281 38 1 3.7058 0.0111 4.2250 39 1 2.4896 -1.0654 3.4938 40 1 3.7018 -2.1183 5.4381 41 1 3.9060 -3.0203 3.9169 42 1 5.8850 -0.9894 5.0478 43 1 6.0684 -2.7581 5.1227 44 1 6.0198 -2.8555 2.6357 45 1 7.3536 -1.8336 3.2247 46 1 7.3023 -0.8930 0.9055 47 1 5.7822 -1.6773 0.4132 48 1 5.2523 1.0635 0.6315 49 1 4.8421 3.4688 -1.6430 50 1 0.4629 -1.8619 3.1606 51 1 -0.4209 -4.1854 3.1469 52 1 0.1308 -5.6720 1.2624 53 1 2.3577 -2.6901 -0.5749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731551709.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:10 Heat of formation + Delta-G solvation = 22.294319 kcal Electronic energy + Delta-G solvation = -33563.781757 eV Core-core repulsion = 29629.046304 eV Total energy + Delta-G solvation = -3934.735453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.02556 -40.75584 -38.50839 -37.12097 -35.99086 -33.94980 -33.55188 -33.27066 -32.30085 -31.44388 -28.69933 -27.80652 -27.38606 -25.71596 -24.62832 -24.22724 -23.63843 -22.95221 -21.75386 -20.89799 -19.70723 -19.03992 -18.05776 -17.85292 -16.98607 -16.73027 -16.62977 -16.46677 -15.77665 -15.63982 -15.38188 -15.25037 -15.06910 -14.96136 -14.70045 -14.46462 -14.27733 -13.96737 -13.92453 -13.70729 -13.51676 -13.42586 -13.10090 -13.07566 -12.98490 -12.77286 -12.76388 -12.61434 -12.16780 -12.07837 -11.88795 -11.81650 -11.72458 -11.70310 -11.57430 -11.39114 -11.29280 -10.79332 -10.72616 -10.34126 -10.07167 -9.51864 -9.36690 -8.50240 -7.75900 -4.92850 0.17651 0.38767 1.43903 1.46817 1.51782 2.06825 2.21939 2.64543 2.88343 3.52360 3.55001 3.63446 3.78561 3.80163 3.85924 3.92065 4.04612 4.06513 4.10385 4.15833 4.18924 4.27639 4.36624 4.42322 4.52657 4.53605 4.59048 4.64992 4.71151 4.75231 4.78556 4.82400 4.88927 4.90542 5.00356 5.05670 5.06566 5.10099 5.14789 5.15757 5.22596 5.24943 5.29559 5.33027 5.35668 5.50068 5.53267 5.57803 5.82545 5.85369 5.92410 6.44273 6.76970 7.07663 7.51312 7.70126 8.29064 8.55609 9.45864 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.004996 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.131576 B = 5602.847344 C = 7111.486455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.043 4.043 5 H 0.116 0.884 6 C 0.480 3.520 7 O -0.493 6.493 8 N -0.615 5.615 9 C 0.101 3.899 10 C -0.125 4.125 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.148 3.852 14 H 0.062 0.938 15 C 0.165 3.835 16 N -0.695 5.695 17 C -0.212 4.212 18 H 0.051 0.949 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.952 3.048 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.284 1.284 25 C -0.112 4.112 26 C -0.066 4.066 27 C -0.154 4.154 28 C 0.079 3.921 29 N -0.516 5.516 30 C 0.089 3.911 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.007 0.993 47 H 0.015 0.985 48 H 0.371 0.629 49 H 0.243 0.757 50 H 0.170 0.830 51 H 0.177 0.823 52 H 0.178 0.822 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.538 -11.879 19.298 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.066 4.066 5 H 0.134 0.866 6 C 0.266 3.734 7 O -0.364 6.364 8 N -0.352 5.352 9 C -0.021 4.021 10 C -0.163 4.163 11 C -0.149 4.149 12 C -0.159 4.159 13 C 0.044 3.956 14 H 0.080 0.920 15 C 0.039 3.961 16 N -0.337 5.337 17 C -0.345 4.345 18 H 0.069 0.931 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.784 3.216 22 H -0.223 1.223 23 H -0.221 1.221 24 H -0.211 1.211 25 C -0.114 4.114 26 C -0.092 4.092 27 C -0.173 4.173 28 C -0.078 4.078 29 N -0.225 5.225 30 C -0.067 4.067 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.024 0.976 47 H 0.033 0.967 48 H 0.204 0.796 49 H 0.052 0.948 50 H 0.187 0.813 51 H 0.194 0.806 52 H 0.195 0.805 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.915 -12.504 17.833 24.826 hybrid contribution 0.423 1.258 -1.227 1.807 sum -11.492 -11.246 16.606 23.115 Atomic orbital electron populations 1.21749 0.92961 1.01532 1.02603 1.20815 0.96456 0.95507 0.95702 1.21837 1.03372 0.95040 1.00210 1.20277 0.91488 0.93575 1.01211 0.86608 1.20753 0.89677 0.78713 0.84263 1.91125 1.69271 1.44859 1.31138 1.47997 1.05593 1.75048 1.06554 1.21990 0.97505 0.99517 0.83095 1.21859 0.95870 0.97306 1.01222 1.21484 0.95510 1.03090 0.94849 1.21843 1.00697 0.96554 0.96761 1.21293 0.80303 0.98575 0.95398 0.92023 1.20842 0.94188 0.90552 0.90548 1.42228 1.58904 1.20017 1.12508 1.19265 1.22072 1.01315 0.91834 0.93110 1.25096 1.02205 0.97976 1.00705 1.69720 1.42210 1.11104 1.37314 0.85520 0.77669 0.76065 0.82337 1.22305 1.22062 1.21064 1.20357 0.99615 0.94980 0.96487 1.21862 0.93544 0.96964 0.96827 1.22501 1.00779 0.93764 1.00288 1.23349 0.93529 1.01442 0.89529 1.67656 1.10598 1.16031 1.28197 1.22341 0.97106 0.89444 0.97772 0.92851 0.90517 0.93005 0.94154 0.91737 0.94658 0.92454 0.90705 0.88636 0.87786 0.92930 0.90988 0.90090 0.93025 0.90408 0.97581 0.96746 0.79589 0.94828 0.81278 0.80582 0.80461 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.91 71.98 0.64 -2.71 16 2 C -0.07 -2.22 1.97 -10.79 -0.02 -2.24 16 3 C -0.15 -5.83 8.88 71.98 0.64 -5.19 16 4 C -0.04 -1.24 1.18 -12.29 -0.01 -1.26 16 5 H 0.12 2.60 6.33 -2.39 -0.02 2.58 16 6 C 0.48 17.57 4.91 87.66 0.43 18.00 16 7 O -0.49 -23.74 8.96 -3.03 -0.03 -23.77 16 8 N -0.61 -18.78 2.97 -795.02 -2.36 -21.15 16 9 C 0.10 1.96 6.14 86.36 0.53 2.49 16 10 C -0.12 -1.93 6.08 30.67 0.19 -1.75 16 11 C -0.11 -1.94 5.88 30.62 0.18 -1.76 16 12 C -0.12 -3.03 5.37 30.67 0.16 -2.86 16 13 C 0.15 4.98 2.94 44.97 0.13 5.11 16 14 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.17 7.47 4.87 86.38 0.42 7.89 16 16 N -0.70 -37.66 3.17 -343.47 -1.09 -38.75 16 17 C -0.21 -12.83 9.67 84.03 0.81 -12.02 16 18 H 0.05 3.11 7.83 -2.91 -0.02 3.08 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 20 N -0.95 -58.92 12.28 21.65 0.27 -58.66 16 21 Si 0.95 50.04 29.55 68.60 2.03 52.06 16 22 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 24 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 25 C -0.11 -2.81 3.19 -19.77 -0.06 -2.87 16 26 C -0.07 -1.07 8.95 22.47 0.20 -0.87 16 27 C -0.15 -2.13 10.11 22.36 0.23 -1.90 16 28 C 0.08 1.55 11.18 84.69 0.95 2.49 16 29 N -0.52 -15.16 10.36 -195.85 -2.03 -17.19 16 30 C 0.09 2.85 10.04 84.67 0.85 3.70 16 31 H 0.05 1.30 7.13 -2.39 -0.02 1.28 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.68 7.11 -2.38 -0.02 1.67 16 35 H 0.06 3.23 5.70 -2.39 -0.01 3.22 16 36 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.50 4.25 -2.39 -0.01 1.49 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 47 H 0.01 0.74 6.45 -2.39 -0.02 0.73 16 48 H 0.37 21.03 6.43 -92.71 -0.60 20.44 16 49 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.17 1.46 7.59 -2.91 -0.02 1.44 16 51 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 52 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 53 H 0.12 4.59 7.46 -2.91 -0.02 4.57 16 Total: -1.00 -78.78 400.96 3.82 -74.97 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.30 Total: 31.85 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.73 Total: 0.63 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -5.21 Total: -135.74 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.03 Total: -23.77 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.03 Total: 52.06 kcal Total: -78.78 3.82 -74.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731551709.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.263 kcal (2) G-P(sol) polarization free energy of solvation -78.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds