Wall clock time and date at job start Wed Apr 1 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47369 * 2 1 4 4 C 1.52994 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47331 * 305.34087 * 4 3 2 6 6 C 1.50701 * 109.47348 * 185.34075 * 4 3 2 7 7 O 1.21278 * 120.00093 * 243.09137 * 6 4 3 8 8 N 1.34783 * 120.00000 * 62.81421 * 6 4 3 9 9 C 1.47018 * 125.64586 * 174.59749 * 8 6 4 10 10 C 1.54315 * 107.27243 * 180.96653 * 9 8 6 11 11 C 1.55159 * 102.86457 * 22.52669 * 10 9 8 12 12 H 1.08996 * 111.00913 * 82.37586 * 11 10 9 13 13 C 1.52999 * 111.03777 * 206.21615 * 11 10 9 14 14 N 1.46505 * 109.46867 * 287.21203 * 13 11 10 15 15 C 1.46493 * 120.00026 * 90.00328 * 14 13 11 16 16 C 1.36933 * 120.00044 * 269.99678 * 14 13 11 17 17 H 1.08003 * 119.99881 * 24.48976 * 16 14 13 18 18 C 1.38810 * 120.00567 * 204.48857 * 16 14 13 19 19 N 1.31616 * 119.99488 * 7.66830 * 18 16 14 20 20 Si 1.86796 * 120.00320 * 187.66711 * 18 16 14 21 21 H 1.48493 * 109.47394 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47021 * 120.00279 * 20 18 16 23 23 H 1.48505 * 109.46934 * 239.99735 * 20 18 16 24 24 C 1.47427 * 125.64508 * 354.90277 * 8 6 4 25 25 C 1.50701 * 109.47403 * 65.33926 * 4 3 2 26 26 C 1.38225 * 119.61546 * 84.72795 * 25 4 3 27 27 C 1.38630 * 119.15812 * 179.71396 * 26 25 4 28 28 C 1.38674 * 118.41975 * 0.55144 * 27 26 25 29 29 C 1.38177 * 119.16407 * 359.73304 * 28 27 26 30 30 N 1.31855 * 119.61769 * 265.00305 * 25 4 3 31 31 H 1.09000 * 109.47067 * 59.99588 * 1 2 3 32 32 H 1.08999 * 109.47507 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47394 * 300.00648 * 1 2 3 34 34 H 1.08999 * 109.47246 * 240.00141 * 2 1 3 35 35 H 1.08998 * 109.47279 * 119.99668 * 2 1 3 36 36 H 1.09000 * 109.46786 * 59.99331 * 3 2 1 37 37 H 1.09004 * 109.47027 * 299.99848 * 3 2 1 38 38 H 1.08995 * 109.87990 * 300.50682 * 9 8 6 39 39 H 1.08998 * 109.88518 * 61.67784 * 9 8 6 40 40 H 1.08994 * 110.92892 * 264.11152 * 10 9 8 41 41 H 1.09004 * 110.74326 * 140.85180 * 10 9 8 42 42 H 1.08997 * 109.47413 * 47.21002 * 13 11 10 43 43 H 1.08997 * 109.47443 * 167.21475 * 13 11 10 44 44 H 1.08998 * 109.47653 * 95.20415 * 15 14 13 45 45 H 1.09001 * 109.47444 * 215.20843 * 15 14 13 46 46 H 1.09007 * 109.47243 * 335.20235 * 15 14 13 47 47 H 0.97001 * 119.99931 * 180.02562 * 19 18 16 48 48 H 1.09003 * 110.36439 * 274.67111 * 24 8 6 49 49 H 1.08991 * 110.36878 * 36.99523 * 24 8 6 50 50 H 1.07997 * 120.42206 * 359.97438 * 26 25 4 51 51 H 1.08006 * 120.79113 * 180.25488 * 27 26 25 52 52 H 1.08001 * 120.41940 * 179.71263 * 28 27 26 53 53 H 1.07997 * 119.61914 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8482 0.8392 6 6 4.0723 2.8572 0.1329 7 8 4.7230 3.3557 -0.7609 8 7 3.7937 3.5703 1.2422 9 6 4.3107 4.9116 1.5508 10 6 3.7451 5.3147 2.9287 11 6 3.4058 3.9464 3.5767 12 1 4.2919 3.4947 4.0226 13 6 2.2878 4.0906 4.6112 14 7 2.8106 4.7601 5.8049 15 6 2.7595 6.2206 5.9072 16 6 3.3468 4.0207 6.8251 17 1 3.7494 3.0384 6.6264 18 6 3.3730 4.5335 8.1148 19 7 2.7504 5.6606 8.3875 20 14 4.2917 3.6240 9.4631 21 1 4.9018 2.3919 8.9022 22 1 5.3583 4.4992 10.0125 23 1 3.3449 3.2578 10.5470 24 6 2.9252 3.1319 2.3498 25 6 4.0729 0.8495 -1.2903 26 6 4.1970 1.6527 -2.4083 27 6 4.6663 1.0987 -3.5893 28 6 4.9836 -0.2511 -3.6047 29 6 4.8280 -0.9926 -2.4492 30 7 4.3843 -0.4307 -1.3416 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9564 -0.8900 38 1 5.3998 4.8897 1.5870 39 1 3.9770 5.6208 0.7933 40 1 2.8470 5.9223 2.8183 41 1 4.4969 5.8432 3.5151 42 1 1.4760 4.6827 4.1888 43 1 1.9143 3.1033 4.8827 44 1 1.8649 6.5154 6.4557 45 1 3.6436 6.5791 6.4344 46 1 2.7321 6.6541 4.9074 47 1 2.7690 6.0192 9.2886 48 1 1.8827 3.3602 2.1276 49 1 3.0504 2.0644 2.5304 50 1 3.9357 2.6996 -2.3613 51 1 4.7775 1.7030 -4.4776 52 1 5.3475 -0.7170 -4.5085 53 1 5.0734 -2.0444 -2.4528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732082546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:45 Heat of formation + Delta-G solvation = 5.027748 kcal Electronic energy + Delta-G solvation = -30983.855168 eV Core-core repulsion = 27048.370981 eV Total energy + Delta-G solvation = -3935.484187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.95422 -40.63673 -38.95441 -37.06439 -36.79837 -33.88145 -33.39905 -33.02584 -32.16839 -30.81895 -29.67707 -27.90465 -27.12566 -26.08950 -24.53010 -24.41370 -23.27759 -22.68235 -21.82496 -21.17493 -20.32612 -18.60263 -18.33069 -17.76876 -17.33595 -16.98886 -16.80658 -16.70737 -16.20446 -15.67501 -15.63455 -15.40671 -15.12115 -14.70480 -14.68535 -14.44034 -14.23734 -14.20416 -13.83275 -13.79306 -13.64051 -13.50066 -13.23163 -13.03753 -12.85120 -12.73325 -12.55398 -12.46179 -12.39620 -12.15080 -12.04404 -11.98492 -11.90896 -11.73120 -11.65258 -11.39852 -11.31248 -10.91541 -10.61859 -10.53354 -10.36302 -9.84906 -9.67217 -8.67959 -7.77160 -5.27280 0.20111 0.41730 1.46432 1.47179 1.49409 1.58325 1.86460 2.53463 2.89292 3.20600 3.30073 3.37355 3.54366 3.78439 3.89127 3.92932 3.97070 4.05174 4.09873 4.11626 4.24791 4.27881 4.31741 4.33807 4.44266 4.47498 4.60642 4.68317 4.70028 4.71018 4.80248 4.86174 4.88550 4.92765 4.96140 4.98812 5.01713 5.05418 5.14273 5.23820 5.26662 5.28116 5.30171 5.34867 5.38714 5.41641 5.49603 5.55959 5.70065 5.82269 5.83457 6.39219 6.45292 6.99236 7.07833 7.22502 7.95527 8.37818 9.25098 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.002396 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.236638 B =11684.133127 C =12056.111633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.105 4.105 4 C -0.048 4.048 5 H 0.114 0.886 6 C 0.533 3.467 7 O -0.569 6.569 8 N -0.609 5.609 9 C 0.113 3.887 10 C -0.111 4.111 11 C -0.111 4.111 12 H 0.061 0.939 13 C 0.162 3.838 14 N -0.617 5.617 15 C 0.179 3.821 16 C -0.252 4.252 17 H 0.071 0.929 18 C -0.056 4.056 19 N -0.941 5.941 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.296 1.296 23 H -0.293 1.293 24 C 0.107 3.893 25 C 0.121 3.879 26 C -0.152 4.152 27 C -0.092 4.092 28 C -0.168 4.168 29 C 0.079 3.921 30 N -0.497 5.497 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.000 1.000 45 H 0.009 0.991 46 H 0.036 0.964 47 H 0.245 0.755 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.138 0.862 51 H 0.152 0.848 52 H 0.164 0.836 53 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.555 -10.609 -24.262 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.143 4.143 4 C -0.070 4.070 5 H 0.132 0.868 6 C 0.322 3.678 7 O -0.449 6.449 8 N -0.341 5.341 9 C -0.010 4.010 10 C -0.149 4.149 11 C -0.133 4.133 12 H 0.079 0.921 13 C 0.036 3.964 14 N -0.340 5.340 15 C 0.034 3.966 16 C -0.382 4.382 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.588 5.588 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.223 1.223 23 H -0.221 1.221 24 C -0.016 4.016 25 C -0.017 4.017 26 C -0.171 4.171 27 C -0.118 4.118 28 C -0.188 4.188 29 C -0.078 4.078 30 N -0.206 5.206 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.028 0.972 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.155 0.845 51 H 0.170 0.830 52 H 0.182 0.818 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.312 -10.806 -23.895 26.258 hybrid contribution 0.940 0.549 0.521 1.207 sum -0.372 -10.257 -23.374 25.529 Atomic orbital electron populations 1.21758 0.94730 1.02103 1.02170 1.21415 0.96365 0.95037 1.02230 1.21718 0.89453 0.99181 1.03939 1.20057 0.98766 0.91527 0.96605 0.86846 1.20309 0.79324 0.87778 0.80403 1.90631 1.42329 1.72511 1.39468 1.48521 1.48112 1.18005 1.19510 1.21930 0.98288 0.83524 0.97219 1.22563 1.01617 0.97475 0.93201 1.22938 1.00369 0.95295 0.94694 0.92060 1.20790 0.92950 0.96880 0.85827 1.44070 1.70646 1.02295 1.16953 1.20553 0.98104 0.82843 0.95101 1.19525 1.31022 1.00423 0.87236 0.91150 1.25788 1.01056 0.98782 0.99393 1.70226 1.46852 1.22428 1.19339 0.85262 0.77675 0.78284 0.79611 1.19065 1.22323 1.22058 1.22617 0.94689 0.99949 0.84334 1.20539 0.96870 0.89944 0.94319 1.22423 0.99659 1.01610 0.93448 1.21962 0.95682 0.95885 0.98268 1.22477 1.00764 0.94652 1.00857 1.23185 0.95201 1.01476 0.87971 1.67374 1.11497 1.11731 1.29987 0.92839 0.92269 0.91891 0.92987 0.91469 0.88868 0.91600 0.92680 0.90989 0.89829 0.91319 0.92456 0.92979 0.98184 0.97199 0.94572 0.94530 0.88651 0.89200 0.84461 0.83003 0.81825 0.80351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.11 -1.92 5.72 30.59 0.18 -1.74 16 3 C -0.10 -1.88 4.49 30.59 0.14 -1.74 16 4 C -0.05 -1.07 1.84 -12.29 -0.02 -1.09 16 5 H 0.11 2.55 7.83 -2.39 -0.02 2.53 16 6 C 0.53 14.16 7.02 87.66 0.62 14.78 16 7 O -0.57 -18.27 13.35 -3.02 -0.04 -18.31 16 8 N -0.61 -15.09 3.33 -811.82 -2.70 -17.79 16 9 C 0.11 2.87 6.87 86.73 0.60 3.47 16 10 C -0.11 -2.95 5.10 31.78 0.16 -2.79 16 11 C -0.11 -3.19 3.25 -9.40 -0.03 -3.22 16 12 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 13 C 0.16 5.58 5.15 86.38 0.44 6.03 16 14 N -0.62 -28.61 2.89 -726.94 -2.10 -30.71 16 15 C 0.18 8.37 8.72 127.77 1.11 9.49 16 16 C -0.25 -13.16 9.66 84.03 0.81 -12.35 16 17 H 0.07 3.57 7.84 -2.91 -0.02 3.55 16 18 C -0.06 -3.05 5.20 84.86 0.44 -2.61 16 19 N -0.94 -54.84 10.52 21.65 0.23 -54.61 16 20 Si 0.96 44.50 29.56 68.60 2.03 46.53 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.11 2.33 4.62 86.86 0.40 2.73 16 25 C 0.12 2.92 4.91 42.55 0.21 3.13 16 26 C -0.15 -3.60 8.29 22.36 0.19 -3.41 16 27 C -0.09 -1.68 10.18 22.47 0.23 -1.45 16 28 C -0.17 -2.54 10.11 22.36 0.23 -2.32 16 29 C 0.08 1.40 11.18 84.67 0.95 2.35 16 30 N -0.50 -11.55 9.61 -183.89 -1.77 -13.32 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.05 1.02 6.90 -2.39 -0.02 1.00 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.47 4.98 -2.39 -0.01 1.46 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.08 7.54 -2.39 -0.02 2.06 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.79 7.90 -2.39 -0.02 1.77 16 43 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 44 H 0.00 -0.01 7.33 -2.39 -0.02 -0.03 16 45 H 0.01 0.49 7.30 -2.39 -0.02 0.47 16 46 H 0.04 1.38 6.55 -2.38 -0.02 1.37 16 47 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 48 H 0.10 1.73 7.11 -2.39 -0.02 1.71 16 49 H 0.09 1.77 7.18 -2.39 -0.02 1.75 16 50 H 0.14 3.59 5.86 -2.91 -0.02 3.57 16 51 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 52 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 53 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -67.85 410.93 3.88 -63.97 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.88 Total: 16.45 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 7.36 Total: 7.80 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -6.34 Total: -116.43 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.04 Total: -18.31 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.85 3.88 -63.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732082546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.999 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds