Wall clock time and date at job start Wed Apr 1 2020 03:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47228 * 2 1 4 4 C 1.52995 * 109.47721 * 174.83460 * 3 2 1 5 5 H 1.09005 * 109.46821 * 304.82829 * 4 3 2 6 6 C 1.50704 * 109.47047 * 64.82465 * 4 3 2 7 7 O 1.21279 * 119.99765 * 30.12819 * 6 4 3 8 8 N 1.34773 * 120.00009 * 210.13290 * 6 4 3 9 9 C 1.47022 * 125.65094 * 354.94277 * 8 6 4 10 10 C 1.54331 * 107.26828 * 178.85425 * 9 8 6 11 11 C 1.55164 * 103.01857 * 338.14047 * 10 9 8 12 12 H 1.08997 * 111.00489 * 277.22983 * 11 10 9 13 13 C 1.52997 * 111.03762 * 153.39618 * 11 10 9 14 14 N 1.46498 * 109.47292 * 72.78055 * 13 11 10 15 15 C 1.46504 * 119.99850 * 89.99866 * 14 13 11 16 16 C 1.36939 * 120.00503 * 270.00711 * 14 13 11 17 17 H 1.07998 * 120.00008 * 145.76723 * 16 14 13 18 18 C 1.38816 * 119.99637 * 325.75776 * 16 14 13 19 19 N 1.31620 * 119.99687 * 157.30468 * 18 16 14 20 20 Si 1.86796 * 120.00097 * 337.30496 * 18 16 14 21 21 H 1.48501 * 109.47196 * 95.37090 * 20 18 16 22 22 H 1.48504 * 109.47140 * 215.36819 * 20 18 16 23 23 H 1.48502 * 109.47142 * 335.37242 * 20 18 16 24 24 C 1.47428 * 125.64540 * 175.25492 * 8 6 4 25 25 C 1.50691 * 109.47571 * 184.82762 * 4 3 2 26 26 C 1.38232 * 119.61707 * 274.72935 * 25 4 3 27 27 C 1.38631 * 119.15781 * 179.71001 * 26 25 4 28 28 C 1.38677 * 118.42164 * 0.55177 * 27 26 25 29 29 C 1.38182 * 119.16239 * 359.72988 * 28 27 26 30 30 N 1.31855 * 119.61862 * 95.00055 * 25 4 3 31 31 H 1.09001 * 109.47056 * 299.99265 * 1 2 3 32 32 H 1.08998 * 109.47268 * 59.99998 * 1 2 3 33 33 H 1.09005 * 109.46952 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47150 * 120.00541 * 2 1 3 35 35 H 1.09005 * 109.47193 * 239.99986 * 2 1 3 36 36 H 1.09003 * 109.47543 * 294.83871 * 3 2 1 37 37 H 1.09006 * 109.47116 * 54.83362 * 3 2 1 38 38 H 1.09002 * 109.87954 * 298.39807 * 9 8 6 39 39 H 1.09002 * 109.87967 * 59.56286 * 9 8 6 40 40 H 1.08997 * 110.85098 * 219.67619 * 10 9 8 41 41 H 1.09001 * 110.66969 * 96.52235 * 10 9 8 42 42 H 1.08995 * 109.47467 * 192.78871 * 13 11 10 43 43 H 1.09010 * 109.47088 * 312.79118 * 13 11 10 44 44 H 1.09005 * 109.46598 * 95.02611 * 15 14 13 45 45 H 1.08994 * 109.47881 * 215.02863 * 15 14 13 46 46 H 1.08998 * 109.46923 * 335.03614 * 15 14 13 47 47 H 0.96998 * 119.99588 * 180.02562 * 19 18 16 48 48 H 1.08990 * 110.36813 * 322.92633 * 24 8 6 49 49 H 1.09004 * 110.36348 * 85.25264 * 24 8 6 50 50 H 1.07996 * 120.41712 * 359.97438 * 26 25 4 51 51 H 1.08003 * 120.78842 * 180.25513 * 27 26 25 52 52 H 1.07995 * 120.41837 * 179.71294 * 28 27 26 53 53 H 1.08000 * 119.61334 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5644 1.4445 0.1299 5 1 3.8541 0.8837 1.0185 6 6 4.1734 0.8025 -1.0900 7 8 3.6077 0.8762 -2.1603 8 7 5.3465 0.1463 -0.9916 9 6 6.1869 0.0693 0.2123 10 6 7.4087 -0.8064 -0.1371 11 6 6.9099 -1.6337 -1.3513 12 1 6.3357 -2.5005 -1.0242 13 6 8.0780 -2.0584 -2.2436 14 7 8.8441 -3.1135 -1.5758 15 6 8.4917 -4.5199 -1.7864 16 6 9.8896 -2.7854 -0.7545 17 1 10.0992 -3.3852 0.1188 18 6 10.6802 -1.6818 -1.0447 19 7 11.3687 -1.0958 -0.0882 20 14 10.7668 -1.0286 -2.7926 21 1 9.7928 0.0805 -2.9553 22 1 12.1377 -0.5276 -3.0664 23 1 10.4387 -2.1193 -3.7455 24 6 6.0027 -0.6077 -2.0752 25 6 4.0566 2.8638 0.2491 26 6 4.2878 3.6050 -0.8946 27 6 4.7347 4.9118 -0.7737 28 6 4.9443 5.4227 0.4984 29 6 4.6971 4.6199 1.5956 30 7 4.2668 3.3825 1.4430 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.7542 1.9290 -0.9326 37 1 1.6031 1.9823 0.8401 38 1 6.5146 1.0683 0.5001 39 1 5.6260 -0.3883 1.0272 40 1 7.6676 -1.4609 0.6952 41 1 8.2597 -0.1855 -0.4169 42 1 7.6932 -2.4335 -3.1919 43 1 8.7251 -1.2008 -2.4277 44 1 9.1108 -4.9343 -2.5821 45 1 8.6607 -5.0787 -0.8661 46 1 7.4413 -4.5929 -2.0682 47 1 11.9209 -0.3245 -0.2909 48 1 5.2591 -1.1219 -2.6838 49 1 6.6032 0.0605 -2.6926 50 1 4.1184 3.1730 -1.8697 51 1 4.9199 5.5159 -1.6496 52 1 5.2965 6.4351 0.6298 53 1 4.8574 5.0105 2.5896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732082547.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:50 Heat of formation + Delta-G solvation = 1.388937 kcal Electronic energy + Delta-G solvation = -31570.023593 eV Core-core repulsion = 27634.381615 eV Total energy + Delta-G solvation = -3935.641978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95442 -40.71831 -39.22317 -37.27474 -36.44690 -33.96083 -33.67558 -33.32703 -32.66682 -30.52905 -30.13767 -28.22380 -27.42165 -25.82763 -24.66834 -24.34011 -23.11025 -22.87564 -22.30720 -21.46815 -20.07249 -18.83963 -18.58815 -17.96758 -17.29820 -17.25533 -16.93173 -16.62958 -16.30155 -15.80145 -15.62837 -15.52496 -15.13998 -15.05493 -14.89605 -14.48145 -14.34618 -14.25589 -14.10018 -14.06354 -13.73521 -13.64843 -13.34069 -13.29854 -13.19582 -12.87075 -12.70315 -12.60192 -12.51449 -12.26368 -12.21477 -11.96163 -11.90008 -11.75364 -11.62579 -11.58685 -11.25874 -10.99161 -10.89011 -10.60047 -10.49235 -9.98890 -9.77177 -8.78790 -8.15699 -5.48707 0.04564 0.26523 1.26878 1.40025 1.40553 1.48360 1.83499 2.41963 2.72909 3.04124 3.13010 3.30524 3.42178 3.67756 3.75682 3.80172 3.86776 3.93469 4.00916 4.02891 4.11530 4.18035 4.19967 4.20843 4.34232 4.39839 4.48671 4.51344 4.56218 4.64967 4.67706 4.74031 4.75929 4.77459 4.78436 4.88336 4.89890 4.96771 4.99461 5.09198 5.12452 5.15245 5.16154 5.21035 5.21686 5.31416 5.32887 5.39905 5.44513 5.69400 5.96147 6.19370 6.39514 6.92575 6.97443 7.00747 7.67405 8.08138 9.03670 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.003434 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.311267 B = 8151.094685 C = 9615.817792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.087 4.087 4 C -0.049 4.049 5 H 0.113 0.887 6 C 0.541 3.459 7 O -0.565 6.565 8 N -0.612 5.612 9 C 0.109 3.891 10 C -0.098 4.098 11 C -0.100 4.100 12 H 0.091 0.909 13 C 0.143 3.857 14 N -0.624 5.624 15 C 0.123 3.877 16 C -0.246 4.246 17 H 0.048 0.952 18 C -0.006 4.006 19 N -0.941 5.941 20 Si 0.924 3.076 21 H -0.278 1.278 22 H -0.314 1.314 23 H -0.264 1.264 24 C 0.113 3.887 25 C 0.126 3.874 26 C -0.184 4.184 27 C -0.077 4.077 28 C -0.167 4.167 29 C 0.093 3.907 30 N -0.496 5.496 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.012 0.988 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.260 0.740 48 H 0.085 0.915 49 H 0.055 0.945 50 H 0.123 0.877 51 H 0.156 0.844 52 H 0.170 0.830 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.687 9.957 1.385 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.126 4.126 4 C -0.071 4.071 5 H 0.131 0.869 6 C 0.330 3.670 7 O -0.444 6.444 8 N -0.345 5.345 9 C -0.013 4.013 10 C -0.137 4.137 11 C -0.122 4.122 12 H 0.109 0.891 13 C 0.017 3.983 14 N -0.348 5.348 15 C -0.021 4.021 16 C -0.375 4.375 17 H 0.066 0.934 18 C -0.203 4.203 19 N -0.585 5.585 20 Si 0.755 3.245 21 H -0.205 1.205 22 H -0.243 1.243 23 H -0.189 1.189 24 C -0.010 4.010 25 C -0.011 4.011 26 C -0.204 4.204 27 C -0.102 4.102 28 C -0.186 4.186 29 C -0.064 4.064 30 N -0.205 5.205 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.073 0.927 50 H 0.141 0.859 51 H 0.174 0.826 52 H 0.187 0.813 53 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.099 9.581 1.588 22.322 hybrid contribution 1.143 0.910 -1.526 2.113 sum -18.956 10.491 0.062 21.665 Atomic orbital electron populations 1.21704 0.94164 1.02267 1.02138 1.21536 0.97423 0.95503 1.01726 1.21425 0.89667 0.98541 1.02924 1.20237 0.97997 0.91914 0.96995 0.86934 1.20261 0.79031 0.77443 0.90265 1.90654 1.62218 1.61143 1.30386 1.48642 1.20540 1.51226 1.14063 1.22116 0.91665 1.00033 0.87500 1.22290 0.95102 0.97276 0.98988 1.22835 0.96179 0.97013 0.96149 0.89112 1.21162 0.91318 0.91416 0.94381 1.44186 1.33662 1.01833 1.55103 1.21180 0.98596 0.83663 0.98679 1.18621 1.05377 1.11347 1.02201 0.93422 1.25725 0.97014 0.98581 0.98989 1.69967 1.33629 1.22250 1.32686 0.86202 0.74950 0.78508 0.84854 1.20550 1.24330 1.18867 1.22246 0.95405 0.93285 0.90082 1.20535 0.96491 0.94961 0.89152 1.22147 1.01904 0.96560 0.99764 1.21944 0.94384 0.94328 0.99588 1.22551 1.00511 1.02972 0.92612 1.23339 0.93495 0.88510 1.01077 1.67424 1.12776 1.14833 1.25506 0.91655 0.92959 0.91976 0.91233 0.93497 0.91727 0.89801 0.92214 0.89375 0.90731 0.93601 0.91449 0.94981 0.96971 0.94346 0.91697 0.93095 0.89691 0.92683 0.85898 0.82601 0.81283 0.79681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.53 5.65 30.59 0.17 -2.36 16 3 C -0.09 -1.91 4.38 30.59 0.13 -1.77 16 4 C -0.05 -1.23 2.07 -12.29 -0.03 -1.26 16 5 H 0.11 2.67 7.08 -2.38 -0.02 2.66 16 6 C 0.54 16.12 5.06 87.66 0.44 16.56 16 7 O -0.56 -19.36 14.97 -3.03 -0.05 -19.40 16 8 N -0.61 -18.71 3.33 -811.77 -2.70 -21.41 16 9 C 0.11 3.28 6.26 86.73 0.54 3.82 16 10 C -0.10 -3.62 5.73 31.79 0.18 -3.44 16 11 C -0.10 -3.42 3.26 -9.40 -0.03 -3.45 16 12 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 13 C 0.14 5.62 4.01 86.38 0.35 5.97 16 14 N -0.62 -27.54 2.53 -726.93 -1.84 -29.38 16 15 C 0.12 4.45 10.69 127.77 1.37 5.81 16 16 C -0.25 -13.11 9.30 84.03 0.78 -12.33 16 17 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 18 C -0.01 -0.35 5.32 84.86 0.45 0.10 16 19 N -0.94 -56.17 13.97 21.65 0.30 -55.87 16 20 Si 0.92 45.13 24.91 68.60 1.71 46.84 16 21 H -0.28 -13.03 6.66 99.48 0.66 -12.36 16 22 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 23 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 24 C 0.11 3.58 6.36 86.85 0.55 4.13 16 25 C 0.13 3.21 5.79 42.55 0.25 3.45 16 26 C -0.18 -4.59 9.18 22.36 0.21 -4.39 16 27 C -0.08 -1.47 10.18 22.47 0.23 -1.25 16 28 C -0.17 -2.66 10.11 22.36 0.23 -2.44 16 29 C 0.09 1.71 11.18 84.67 0.95 2.66 16 30 N -0.50 -11.98 10.27 -183.89 -1.89 -13.87 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.15 7.18 -2.38 -0.02 1.13 16 36 H 0.06 1.57 7.68 -2.39 -0.02 1.55 16 37 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 2.27 7.65 -2.39 -0.02 2.25 16 40 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 42 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 43 H 0.03 1.43 2.67 -2.38 -0.01 1.43 16 44 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 46 H 0.06 1.91 8.03 -2.39 -0.02 1.89 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 49 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 50 H 0.12 3.43 6.53 -2.91 -0.02 3.41 16 51 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 52 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 53 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -67.31 416.13 3.85 -63.46 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.83 Total: 21.46 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 7.48 Total: 8.16 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -6.12 Total: -120.52 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.71 Total: 46.84 kcal Total: -67.31 3.85 -63.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732082547.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.851 kcal (2) G-P(sol) polarization free energy of solvation -67.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds