Wall clock time and date at job start Wed Apr 1 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46921 * 2 1 4 4 C 1.52998 * 109.46783 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47299 * 304.26907 * 4 3 2 6 6 C 1.50700 * 109.47031 * 184.26790 * 4 3 2 7 7 O 1.21282 * 120.00156 * 264.14439 * 6 4 3 8 8 N 1.34778 * 119.99625 * 84.14364 * 6 4 3 9 9 C 1.46495 * 120.00222 * 354.97139 * 8 6 4 10 10 C 1.52998 * 109.47303 * 83.84696 * 9 8 6 11 11 C 1.46501 * 119.99783 * 174.97615 * 8 6 4 12 12 H 1.08998 * 110.88959 * 354.21756 * 11 8 6 13 13 C 1.55156 * 111.01036 * 118.10230 * 11 8 6 14 14 C 1.54313 * 102.94576 * 153.57104 * 13 11 8 15 15 N 1.47016 * 107.27582 * 337.80897 * 14 13 11 16 16 C 1.36936 * 125.65333 * 178.91540 * 15 14 13 17 17 H 1.08003 * 119.99907 * 186.21143 * 16 15 14 18 18 C 1.38811 * 120.00111 * 6.21775 * 16 15 14 19 19 N 1.31628 * 119.99720 * 6.91212 * 18 16 15 20 20 Si 1.86802 * 120.00361 * 186.91678 * 18 16 15 21 21 H 1.48500 * 109.47157 * 94.98568 * 20 18 16 22 22 H 1.48497 * 109.46922 * 214.98667 * 20 18 16 23 23 H 1.48497 * 109.46670 * 334.98656 * 20 18 16 24 24 C 1.47431 * 108.70200 * 358.93781 * 15 14 13 25 25 C 1.50703 * 109.47037 * 64.27005 * 4 3 2 26 26 C 1.38232 * 119.61334 * 84.99882 * 25 4 3 27 27 C 1.38634 * 119.15650 * 179.97438 * 26 25 4 28 28 C 1.38667 * 118.42192 * 0.02562 * 27 26 25 29 29 C 1.38184 * 119.16509 * 359.97438 * 28 27 26 30 30 N 1.31844 * 119.61940 * 264.72166 * 25 4 3 31 31 H 1.09000 * 109.46855 * 60.00006 * 1 2 3 32 32 H 1.08998 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47088 * 299.99960 * 1 2 3 34 34 H 1.08997 * 109.47088 * 240.00040 * 2 1 3 35 35 H 1.09000 * 109.46855 * 119.99994 * 2 1 3 36 36 H 1.09003 * 109.46791 * 60.00104 * 3 2 1 37 37 H 1.08995 * 109.47154 * 300.00100 * 3 2 1 38 38 H 1.09003 * 109.47348 * 323.84310 * 9 8 6 39 39 H 1.09008 * 109.47348 * 203.84732 * 9 8 6 40 40 H 1.08998 * 109.47186 * 178.06420 * 10 9 8 41 41 H 1.09002 * 109.46846 * 58.06479 * 10 9 8 42 42 H 1.08997 * 109.47065 * 298.06070 * 10 9 8 43 43 H 1.09000 * 110.71798 * 271.93968 * 13 11 8 44 44 H 1.09007 * 110.71703 * 35.02982 * 13 11 8 45 45 H 1.09003 * 109.88318 * 97.22666 * 14 13 11 46 46 H 1.09003 * 109.88572 * 218.38941 * 14 13 11 47 47 H 0.97000 * 119.99767 * 180.02562 * 19 18 16 48 48 H 1.08997 * 110.36806 * 265.29338 * 24 15 14 49 49 H 1.08999 * 110.36769 * 142.96742 * 24 15 14 50 50 H 1.07994 * 120.42347 * 0.02562 * 26 25 4 51 51 H 1.07993 * 120.78898 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.42023 * 179.97438 * 28 27 26 53 53 H 1.08001 * 119.62159 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8640 0.8501 6 6 4.0723 2.8594 0.1064 7 8 4.3759 3.4716 -0.8956 8 7 4.1841 3.4463 1.3145 9 6 3.7147 2.7486 2.5141 10 6 4.8054 1.7973 3.0104 11 6 4.7750 4.7820 1.4281 12 1 5.1634 5.1182 0.4668 13 6 3.7499 5.7970 1.9994 14 6 4.6494 6.8570 2.6692 15 7 5.9424 6.2168 2.9516 16 6 7.0263 6.8261 3.5253 17 1 7.9655 6.2982 3.6003 18 6 6.9178 8.1221 4.0105 19 7 5.7436 8.7161 4.0441 20 14 8.4380 9.0233 4.6157 21 1 8.9883 9.8583 3.5179 22 1 8.0742 9.8920 5.7638 23 1 9.4600 8.0357 5.0464 24 6 5.8790 4.8102 2.5145 25 6 4.0728 0.8255 -1.2790 26 6 4.2022 1.6091 -2.4104 27 6 4.6662 1.0318 -3.5824 28 6 4.9836 -0.3180 -3.5726 29 6 4.8284 -1.0378 -2.4032 30 7 4.3894 -0.4541 -1.3050 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 1.9564 -0.8899 38 1 2.8167 2.1787 2.2751 39 1 3.4863 3.4770 3.2922 40 1 4.4695 1.3036 3.9223 41 1 5.7142 2.3626 3.2168 42 1 5.0094 1.0478 2.2457 43 1 3.1604 6.2422 1.1979 44 1 3.1012 5.3184 2.7331 45 1 4.7932 7.7010 1.9945 46 1 4.1929 7.1966 3.5989 47 1 5.6679 9.6219 4.3828 48 1 5.6058 4.1653 3.3497 49 1 6.8349 4.5008 2.0920 50 1 3.9460 2.6577 -2.3816 51 1 4.7778 1.6194 -4.4815 52 1 5.3474 -0.8007 -4.4675 53 1 5.0730 -2.0897 -2.3874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732186825.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:33 Heat of formation + Delta-G solvation = 14.047689 kcal Electronic energy + Delta-G solvation = -31673.395514 eV Core-core repulsion = 27738.302460 eV Total energy + Delta-G solvation = -3935.093053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.05817 -40.67421 -39.05429 -37.01152 -36.49198 -34.23336 -33.37233 -32.97324 -31.77023 -30.81768 -30.25622 -28.87011 -26.59690 -25.89893 -24.56158 -24.30260 -23.61703 -22.17568 -22.01882 -21.43312 -20.07021 -18.92080 -18.63978 -17.72111 -17.46199 -16.90441 -16.69956 -16.48366 -16.30382 -15.91132 -15.73126 -15.20997 -14.99695 -14.89219 -14.54472 -14.37614 -14.15435 -14.08415 -13.98015 -13.77609 -13.74371 -13.56274 -13.31786 -13.10445 -12.95696 -12.82917 -12.69653 -12.35276 -12.32126 -12.13435 -12.05348 -12.02829 -11.89010 -11.88227 -11.75998 -11.44995 -11.40701 -10.79784 -10.74762 -10.48865 -10.24855 -9.88994 -9.66524 -8.91044 -7.85945 -5.24513 0.20665 0.42725 1.44587 1.47195 1.47292 1.55874 1.81933 2.48899 2.90115 3.21965 3.30605 3.33793 3.65853 3.86982 3.90796 3.91760 3.98077 4.03372 4.06473 4.12982 4.16632 4.24696 4.29710 4.32934 4.40239 4.45704 4.52952 4.55843 4.59704 4.70650 4.72663 4.79090 4.82747 4.85826 4.90720 4.97044 5.01211 5.03758 5.06784 5.17046 5.27298 5.28539 5.36252 5.37455 5.40688 5.44335 5.51649 5.58585 5.62940 5.72833 5.86620 6.17618 6.39713 7.03261 7.06898 7.12515 7.73240 8.37384 9.22589 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.002697 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.414958 B =10378.839530 C =11127.226291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.100 4.100 4 C -0.050 4.050 5 H 0.125 0.875 6 C 0.521 3.479 7 O -0.568 6.568 8 N -0.588 5.588 9 C 0.091 3.909 10 C -0.176 4.176 11 C 0.140 3.860 12 H 0.080 0.920 13 C -0.132 4.132 14 C 0.183 3.817 15 N -0.623 5.623 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.977 3.023 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.267 1.267 24 C 0.131 3.869 25 C 0.118 3.882 26 C -0.175 4.175 27 C -0.095 4.095 28 C -0.170 4.170 29 C 0.080 3.920 30 N -0.491 5.491 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.087 0.913 45 H -0.005 1.005 46 H 0.032 0.968 47 H 0.248 0.752 48 H 0.048 0.952 49 H 0.029 0.971 50 H 0.155 0.845 51 H 0.147 0.853 52 H 0.162 0.838 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -22.895 -10.278 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.138 4.138 4 C -0.072 4.072 5 H 0.143 0.857 6 C 0.310 3.690 7 O -0.448 6.448 8 N -0.318 5.318 9 C -0.030 4.030 10 C -0.234 4.234 11 C 0.035 3.965 12 H 0.098 0.902 13 C -0.171 4.171 14 C 0.058 3.942 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.192 1.192 24 C 0.005 3.995 25 C -0.019 4.019 26 C -0.195 4.195 27 C -0.121 4.121 28 C -0.189 4.189 29 C -0.077 4.077 30 N -0.200 5.200 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.013 0.987 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.048 0.952 50 H 0.172 0.828 51 H 0.165 0.835 52 H 0.180 0.820 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.828 -22.894 -9.909 26.812 hybrid contribution 1.209 1.757 -0.534 2.198 sum -8.619 -21.137 -10.443 25.102 Atomic orbital electron populations 1.21762 0.94783 1.02158 1.02062 1.21423 0.96272 0.94639 1.02566 1.21602 0.89325 0.99338 1.03505 1.20217 0.98695 0.91070 0.97174 0.85732 1.20848 0.76659 0.88990 0.82492 1.90496 1.52102 1.66418 1.35775 1.47913 1.59834 1.16597 1.07436 1.21960 0.98258 0.96143 0.86641 1.22384 0.99072 0.99329 1.02568 1.21941 0.93669 0.82145 0.98728 0.90197 1.23024 0.97394 0.96496 1.00151 1.20932 0.84744 0.92020 0.96501 1.44650 1.11964 1.06986 1.71372 1.19407 0.89803 0.97054 1.31065 0.90241 1.25639 0.99808 0.98377 1.01723 1.70160 1.23108 1.13644 1.52629 0.85077 0.78850 0.78387 0.77129 1.21739 1.21778 1.19158 1.21976 0.96098 0.86442 0.94971 1.20600 0.96915 0.90080 0.94314 1.23090 0.99595 1.03235 0.93554 1.21990 0.95791 0.95798 0.98497 1.22483 1.00791 0.94758 1.00889 1.23199 0.95222 1.01396 0.87893 1.67369 1.11341 1.10841 1.30426 0.93308 0.92022 0.91726 0.93114 0.90652 0.89037 0.92120 0.87317 0.89480 0.88864 0.93436 0.92084 0.90872 0.89498 0.98658 0.94950 0.94266 0.93410 0.95228 0.82841 0.83537 0.82006 0.80089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.11 -1.71 5.70 30.60 0.17 -1.53 16 3 C -0.10 -1.76 4.42 30.60 0.14 -1.63 16 4 C -0.05 -1.11 1.71 -12.29 -0.02 -1.13 16 5 H 0.12 2.49 5.21 -2.39 -0.01 2.48 16 6 C 0.52 14.97 6.72 87.66 0.59 15.56 16 7 O -0.57 -20.15 12.17 -3.03 -0.04 -20.18 16 8 N -0.59 -16.45 2.53 -790.12 -2.00 -18.44 16 9 C 0.09 1.88 4.79 86.38 0.41 2.30 16 10 C -0.18 -3.43 9.72 71.98 0.70 -2.73 16 11 C 0.14 5.09 3.42 46.39 0.16 5.25 16 12 H 0.08 3.33 7.06 -2.39 -0.02 3.32 16 13 C -0.13 -4.85 6.50 31.78 0.21 -4.65 16 14 C 0.18 9.11 5.42 86.73 0.47 9.58 16 15 N -0.62 -32.38 3.39 -691.99 -2.35 -34.73 16 16 C -0.24 -13.88 10.26 84.03 0.86 -13.02 16 17 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 18 C -0.06 -3.56 5.45 84.86 0.46 -3.09 16 19 N -0.95 -57.05 10.46 21.65 0.23 -56.82 16 20 Si 0.98 46.15 29.56 68.60 2.03 48.18 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C 0.13 5.42 6.25 86.86 0.54 5.97 16 25 C 0.12 2.94 4.94 42.56 0.21 3.15 16 26 C -0.18 -4.60 8.62 22.36 0.19 -4.41 16 27 C -0.09 -1.97 10.18 22.47 0.23 -1.74 16 28 C -0.17 -2.82 10.11 22.36 0.23 -2.59 16 29 C 0.08 1.45 11.18 84.67 0.95 2.39 16 30 N -0.49 -11.22 9.62 -183.88 -1.77 -12.99 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.94 6.88 -2.39 -0.02 0.93 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.35 6.32 -2.39 -0.02 1.33 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.58 5.25 -2.39 -0.01 1.57 16 39 H 0.09 1.91 6.38 -2.38 -0.02 1.89 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.05 1.17 6.00 -2.39 -0.01 1.16 16 42 H 0.06 1.15 6.16 -2.39 -0.01 1.14 16 43 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.09 2.78 6.60 -2.38 -0.02 2.76 16 45 H 0.00 -0.27 7.90 -2.39 -0.02 -0.29 16 46 H 0.03 1.78 7.01 -2.39 -0.02 1.77 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.05 1.83 5.18 -2.39 -0.01 1.82 16 49 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.15 4.65 5.16 -15.81 -0.08 4.57 16 51 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 52 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 53 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -72.00 400.93 4.15 -67.85 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.84 Total: 20.68 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 7.21 Total: 6.47 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -5.89 Total: -122.99 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.18 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.00 4.15 -67.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732186825.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.894 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds