Wall clock time and date at job start Wed Apr 1 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.53008 * 109.46928 * 184.82113 * 3 2 1 5 5 H 1.09001 * 109.47060 * 303.19070 * 4 3 2 6 6 C 1.50700 * 109.46789 * 63.19237 * 4 3 2 7 7 O 1.21273 * 120.00307 * 32.96812 * 6 4 3 8 8 N 1.34775 * 119.99365 * 212.96269 * 6 4 3 9 9 C 1.46500 * 120.00480 * 4.93595 * 8 6 4 10 10 C 1.52992 * 109.47229 * 83.61463 * 9 8 6 11 11 C 1.46509 * 119.99604 * 184.93174 * 8 6 4 12 12 H 1.08992 * 110.64212 * 2.27026 * 11 8 6 13 13 C 1.55158 * 110.71859 * 239.13215 * 11 8 6 14 14 C 1.54912 * 101.61593 * 277.11913 * 13 11 8 15 15 N 1.47460 * 104.81169 * 323.04439 * 14 13 11 16 16 C 1.36941 * 125.63189 * 204.05024 * 15 14 13 17 17 H 1.07997 * 120.00114 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99748 * 0.02562 * 16 15 14 19 19 N 1.31619 * 119.99795 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46881 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47091 * 120.00158 * 20 18 16 23 23 H 1.48500 * 109.46732 * 240.00566 * 20 18 16 24 24 C 1.47019 * 108.72495 * 24.07187 * 15 14 13 25 25 C 1.50701 * 109.46930 * 183.19141 * 4 3 2 26 26 C 1.38228 * 119.61664 * 274.72879 * 25 4 3 27 27 C 1.38629 * 119.15866 * 179.71024 * 26 25 4 28 28 C 1.38671 * 118.41843 * 0.55057 * 27 26 25 29 29 C 1.38180 * 119.16683 * 359.73029 * 28 27 26 30 30 N 1.31852 * 119.61709 * 95.00095 * 25 4 3 31 31 H 1.08995 * 109.46886 * 300.00067 * 1 2 3 32 32 H 1.09002 * 109.46981 * 59.99984 * 1 2 3 33 33 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47106 * 240.00305 * 2 1 3 35 35 H 1.08996 * 109.47418 * 120.00043 * 2 1 3 36 36 H 1.08996 * 109.46888 * 64.82268 * 3 2 1 37 37 H 1.08998 * 109.46968 * 304.81698 * 3 2 1 38 38 H 1.09000 * 109.47097 * 203.62084 * 9 8 6 39 39 H 1.09004 * 109.46863 * 323.61616 * 9 8 6 40 40 H 1.09003 * 109.47806 * 294.85075 * 10 9 8 41 41 H 1.09011 * 109.47448 * 54.84860 * 10 9 8 42 42 H 1.09006 * 109.47405 * 174.84511 * 10 9 8 43 43 H 1.09000 * 111.00445 * 35.21333 * 13 11 8 44 44 H 1.08999 * 111.00582 * 159.02845 * 13 11 8 45 45 H 1.09006 * 110.36715 * 81.84804 * 14 13 11 46 46 H 1.09002 * 110.37074 * 204.16845 * 14 13 11 47 47 H 0.97008 * 119.99866 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.88201 * 239.56195 * 24 15 14 49 49 H 1.09002 * 110.01706 * 118.46311 * 24 15 14 50 50 H 1.07998 * 120.42056 * 359.97438 * 26 25 4 51 51 H 1.08000 * 120.79116 * 180.30728 * 27 26 25 52 52 H 1.08007 * 120.41700 * 179.75333 * 28 27 26 53 53 H 1.08001 * 119.62087 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4442 -0.1212 5 1 3.9950 0.8581 0.6912 6 6 3.9647 0.8397 -1.4426 7 8 3.2566 0.9876 -2.4160 8 7 5.1091 0.1348 -1.5426 9 6 5.9097 -0.1360 -0.3460 10 6 5.3519 -1.3656 0.3734 11 6 5.5524 -0.3609 -2.8481 12 1 4.8680 -0.0402 -3.6335 13 6 5.6841 -1.9068 -2.8325 14 6 7.0905 -2.0937 -2.2105 15 7 7.8956 -0.9868 -2.7593 16 6 9.2592 -0.9779 -2.8847 17 1 9.7576 -0.1149 -3.3006 18 6 10.0008 -2.0783 -2.4771 19 7 9.3932 -3.1303 -1.9706 20 14 11.8610 -2.0661 -2.6474 21 1 12.2951 -0.7762 -3.2415 22 1 12.4817 -2.2287 -1.3083 23 1 12.2847 -3.1837 -3.5286 24 6 6.9923 0.1057 -3.1491 25 6 4.0739 2.8606 -0.0425 26 6 4.1168 3.6355 -1.1863 27 6 4.5807 4.9392 -1.1018 28 6 4.9968 5.4129 0.1333 29 6 4.9303 4.5777 1.2321 30 7 4.4778 3.3444 1.1156 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 1.7489 1.9307 0.9300 37 1 1.6079 1.9806 -0.8437 38 1 6.9440 -0.3223 -0.6353 39 1 5.8685 0.7251 0.3211 40 1 4.3500 -1.1471 0.7430 41 1 5.3078 -2.2043 -0.3215 42 1 6.0004 -1.6218 1.2113 43 1 4.9160 -2.3580 -2.2045 44 1 5.6471 -2.3123 -3.8436 45 1 7.0375 -2.0214 -1.1241 46 1 7.5122 -3.0540 -2.5075 47 1 9.9114 -3.8995 -1.6862 48 1 7.0996 0.3135 -4.2137 49 1 7.2198 1.0019 -2.5718 50 1 3.7891 3.2320 -2.1329 51 1 4.6209 5.5696 -1.9779 52 1 5.3677 6.4222 0.2352 53 1 5.2528 4.9390 2.1974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732186828.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:38 Heat of formation + Delta-G solvation = 10.815001 kcal Electronic energy + Delta-G solvation = -32469.286478 eV Core-core repulsion = 28534.053245 eV Total energy + Delta-G solvation = -3935.233233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.08930 -40.80548 -39.24016 -36.48456 -36.33857 -34.22298 -33.56801 -33.16710 -31.88007 -31.05337 -30.08701 -28.67977 -26.61046 -25.88733 -24.62000 -24.39618 -23.52165 -22.49933 -22.03119 -21.30656 -19.75155 -18.94257 -18.77054 -17.96160 -17.42777 -16.99064 -16.72383 -16.29358 -16.13282 -15.91006 -15.68238 -15.52351 -15.19640 -14.78785 -14.45079 -14.38034 -14.24489 -14.09152 -13.99524 -13.75104 -13.45103 -13.41552 -13.22844 -13.00993 -12.93404 -12.86608 -12.73710 -12.52862 -12.34117 -12.11660 -12.08531 -11.99514 -11.85265 -11.84178 -11.71589 -11.55162 -11.40808 -10.85478 -10.77295 -10.66621 -10.44833 -9.93649 -9.68692 -8.85728 -7.75280 -5.19003 0.09037 0.30933 1.46916 1.47629 1.48637 1.57881 1.90280 2.49966 2.77312 3.18545 3.34966 3.38889 3.69786 3.82241 3.87121 3.87771 3.92491 4.02362 4.03013 4.09615 4.15620 4.21316 4.23663 4.29113 4.37671 4.42415 4.54001 4.59935 4.62637 4.67672 4.69641 4.77477 4.81300 4.82733 4.89132 4.93274 4.93448 4.99801 5.01498 5.16099 5.17300 5.22747 5.25529 5.32836 5.35587 5.42527 5.48645 5.60462 5.71291 5.73814 5.85098 6.33507 6.41430 6.96576 7.08640 7.13504 7.78701 8.42608 9.25642 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.003602 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.645739 B = 7771.199790 C = 9074.563574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.088 4.088 4 C -0.055 4.055 5 H 0.114 0.886 6 C 0.531 3.469 7 O -0.565 6.565 8 N -0.586 5.586 9 C 0.100 3.900 10 C -0.164 4.164 11 C 0.138 3.862 12 H 0.103 0.897 13 C -0.142 4.142 14 C 0.149 3.851 15 N -0.617 5.617 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.057 4.057 19 N -0.941 5.941 20 Si 0.974 3.026 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.293 1.293 24 C 0.131 3.869 25 C 0.126 3.874 26 C -0.183 4.183 27 C -0.076 4.076 28 C -0.167 4.167 29 C 0.092 3.908 30 N -0.497 5.497 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.027 0.973 46 H 0.068 0.932 47 H 0.247 0.753 48 H 0.031 0.969 49 H 0.019 0.981 50 H 0.125 0.875 51 H 0.156 0.844 52 H 0.170 0.830 53 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.792 13.280 7.537 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.126 4.126 4 C -0.077 4.077 5 H 0.132 0.868 6 C 0.319 3.681 7 O -0.445 6.445 8 N -0.317 5.317 9 C -0.022 4.022 10 C -0.222 4.222 11 C 0.034 3.966 12 H 0.121 0.879 13 C -0.181 4.181 14 C 0.025 3.975 15 N -0.344 5.344 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.250 4.250 19 N -0.591 5.591 20 Si 0.803 3.197 21 H -0.196 1.196 22 H -0.218 1.218 23 H -0.220 1.220 24 C 0.004 3.996 25 C -0.011 4.011 26 C -0.203 4.203 27 C -0.102 4.102 28 C -0.187 4.187 29 C -0.065 4.065 30 N -0.206 5.206 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.037 0.963 50 H 0.143 0.857 51 H 0.174 0.826 52 H 0.187 0.813 53 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.004 12.711 7.794 21.152 hybrid contribution 1.432 0.202 -1.089 1.810 sum -13.572 12.913 6.705 19.897 Atomic orbital electron populations 1.21694 0.94313 1.02173 1.02039 1.21544 0.97356 0.95569 1.01727 1.21432 0.89843 0.98454 1.02857 1.20317 0.99207 0.92312 0.95866 0.86803 1.20550 0.79805 0.77280 0.90422 1.90625 1.52349 1.61391 1.40105 1.47944 1.22672 1.52790 1.08278 1.21725 0.96309 0.98470 0.85729 1.22278 1.01617 0.97611 1.00724 1.21889 0.94543 0.94770 0.85387 0.87886 1.23244 0.98945 0.94343 1.01559 1.22002 0.86940 0.93220 0.95370 1.44736 1.01876 1.14696 1.73110 1.19379 0.81878 1.00656 1.34707 0.90733 1.25479 1.01947 0.96271 1.01333 1.70040 1.34068 1.06286 1.48665 0.85077 0.80414 0.77347 0.76864 1.19622 1.21850 1.21993 1.21643 0.89420 0.91273 0.97223 1.20528 0.96167 0.94932 0.89487 1.22183 1.01992 0.96335 0.99775 1.21939 0.94124 0.94573 0.99577 1.22539 1.00376 1.02892 0.92865 1.23326 0.94251 0.88329 1.00641 1.67412 1.10926 1.16036 1.26254 0.91574 0.93204 0.92059 0.93684 0.90923 0.89828 0.91774 0.90438 0.90596 0.91166 0.92297 0.90897 0.90156 0.91125 0.95548 0.91399 0.94344 0.95074 0.96257 0.85734 0.82591 0.81290 0.79720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.91 71.98 0.71 -1.86 16 2 C -0.12 -2.66 5.79 30.60 0.18 -2.49 16 3 C -0.09 -2.00 4.40 30.60 0.13 -1.86 16 4 C -0.06 -1.44 1.77 -12.28 -0.02 -1.46 16 5 H 0.11 2.87 5.19 -2.39 -0.01 2.86 16 6 C 0.53 16.53 4.64 87.66 0.41 16.93 16 7 O -0.57 -19.96 14.05 -3.01 -0.04 -20.00 16 8 N -0.59 -19.36 2.44 -791.26 -1.93 -21.30 16 9 C 0.10 3.26 4.65 86.38 0.40 3.66 16 10 C -0.16 -4.67 8.99 71.98 0.65 -4.02 16 11 C 0.14 5.08 3.58 46.18 0.17 5.24 16 12 H 0.10 3.75 7.01 -2.39 -0.02 3.73 16 13 C -0.14 -5.37 6.14 31.99 0.20 -5.17 16 14 C 0.15 6.96 4.78 86.85 0.42 7.37 16 15 N -0.62 -30.86 2.90 -691.87 -2.01 -32.87 16 16 C -0.24 -13.03 10.27 84.03 0.86 -12.17 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16 19 N -0.94 -53.99 10.09 21.65 0.22 -53.77 16 20 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 C 0.13 5.54 6.16 86.73 0.53 6.07 16 25 C 0.13 3.33 5.65 42.55 0.24 3.57 16 26 C -0.18 -4.72 9.18 22.36 0.21 -4.51 16 27 C -0.08 -1.51 10.18 22.47 0.23 -1.28 16 28 C -0.17 -2.72 10.11 22.36 0.23 -2.49 16 29 C 0.09 1.72 11.18 84.67 0.95 2.67 16 30 N -0.50 -12.30 10.27 -183.89 -1.89 -14.19 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 1.17 6.89 -2.39 -0.02 1.16 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.61 7.74 -2.39 -0.02 1.60 16 38 H 0.08 3.14 4.94 -2.39 -0.01 3.13 16 39 H 0.08 2.30 6.52 -2.39 -0.02 2.29 16 40 H 0.07 1.66 7.09 -2.39 -0.02 1.65 16 41 H 0.06 1.84 5.06 -2.38 -0.01 1.83 16 42 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 2.77 6.77 -2.39 -0.02 2.75 16 44 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.03 1.25 4.24 -2.38 -0.01 1.24 16 46 H 0.07 3.71 5.88 -2.39 -0.01 3.69 16 47 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 48 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.02 0.84 7.96 -2.39 -0.02 0.83 16 50 H 0.12 3.59 6.40 -2.91 -0.02 3.57 16 51 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 52 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 53 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -65.64 400.66 4.22 -61.42 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.90 Total: 28.21 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 6.95 Total: 5.52 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.61 Total: -122.12 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.64 4.22 -61.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732186828.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.232 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds