Wall clock time and date at job start Wed Apr 1 2020 04:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 N 1.46901 * 109.47051 * 119.99907 * 2 1 3 5 5 C 1.46898 * 111.00122 * 56.04204 * 4 2 1 6 6 C 1.46903 * 111.00094 * 180.02562 * 4 2 1 7 7 C 1.50698 * 109.47109 * 169.99957 * 6 4 2 8 8 O 1.21281 * 120.00193 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00231 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00767 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47614 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.40387 * 64.88780 * 11 10 9 13 13 C 1.50806 * 109.43416 * 184.78273 * 11 10 9 14 14 C 1.38837 * 117.81126 * 289.07689 * 13 11 10 15 15 C 1.37953 * 120.51234 * 179.58540 * 14 13 11 16 16 C 1.38265 * 119.72115 * 359.95829 * 15 14 13 17 17 C 1.37908 * 119.82227 * 0.19534 * 16 15 14 18 18 C 1.37675 * 122.35196 * 108.98451 * 13 11 10 19 19 C 1.50604 * 122.87067 * 0.86529 * 18 13 11 20 20 C 1.53273 * 110.81441 * 340.03594 * 19 18 13 21 21 N 1.46682 * 109.43035 * 304.99697 * 11 10 9 22 22 C 1.36935 * 121.34216 * 104.17482 * 21 11 10 23 23 H 1.07999 * 119.99695 * 334.01860 * 22 21 11 24 24 C 1.38814 * 120.00236 * 154.01734 * 22 21 11 25 25 N 1.31618 * 119.99920 * 341.12471 * 24 22 21 26 26 Si 1.86803 * 119.99971 * 161.12580 * 24 22 21 27 27 H 1.48493 * 109.47063 * 270.00371 * 26 24 22 28 28 H 1.48503 * 109.46839 * 30.00023 * 26 24 22 29 29 H 1.48498 * 109.46899 * 149.99891 * 26 24 22 30 30 H 1.09000 * 109.47392 * 299.99911 * 1 2 3 31 31 H 1.08999 * 109.47529 * 60.00234 * 1 2 3 32 32 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47267 * 239.99372 * 2 1 3 34 34 H 1.09003 * 109.47539 * 60.00170 * 3 2 1 35 35 H 1.09010 * 109.47090 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47333 * 299.99601 * 3 2 1 37 37 H 1.08998 * 109.47183 * 183.94983 * 5 4 2 38 38 H 1.08996 * 109.47408 * 303.95903 * 5 4 2 39 39 H 1.09001 * 109.46839 * 63.95854 * 5 4 2 40 40 H 1.09000 * 109.47184 * 49.99715 * 6 4 2 41 41 H 1.09004 * 109.46596 * 289.99553 * 6 4 2 42 42 H 0.97009 * 119.99836 * 0.02562 * 9 7 6 43 43 H 1.08993 * 109.46710 * 59.99469 * 10 9 7 44 44 H 1.09005 * 109.46337 * 300.00208 * 10 9 7 45 45 H 1.08004 * 119.74181 * 359.57907 * 14 13 11 46 46 H 1.08005 * 120.14113 * 179.97438 * 15 14 13 47 47 H 1.07994 * 120.08824 * 180.17139 * 16 15 14 48 48 H 1.07995 * 119.70931 * 179.97438 * 17 16 15 49 49 H 1.08998 * 109.20268 * 100.50903 * 19 18 13 50 50 H 1.08998 * 109.20321 * 219.85355 * 19 18 13 51 51 H 1.09000 * 109.89532 * 288.14715 * 20 19 18 52 52 H 1.09005 * 109.91457 * 167.17600 * 20 19 18 53 53 H 0.97005 * 119.99854 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4728 -2.0534 1.2817 6 6 3.4881 -0.7116 1.2337 7 6 3.9528 -1.2040 2.5801 8 8 3.1406 -1.5085 3.4278 9 7 5.2708 -1.3059 2.8422 10 6 5.7227 -1.7851 4.1508 11 6 7.2521 -1.8049 4.1865 12 1 7.6294 -0.7856 4.1042 13 6 7.7158 -2.4080 5.4886 14 6 7.5353 -1.6648 6.6474 15 6 7.9312 -2.1664 7.8700 16 6 8.5114 -3.4193 7.9415 17 6 8.6942 -4.1572 6.7909 18 6 8.3003 -3.6526 5.5573 19 6 8.5442 -4.5092 4.3428 20 6 7.6516 -4.0685 3.1773 21 7 7.7561 -2.6041 3.0646 22 6 8.2969 -2.0121 1.9546 23 1 8.0036 -1.0095 1.6803 24 6 9.2222 -2.7004 1.1819 25 7 9.8577 -3.7376 1.6847 26 14 9.5654 -2.1547 -0.5713 27 1 8.6410 -2.8561 -1.4979 28 1 9.3593 -0.6883 -0.6826 29 1 10.9686 -2.4858 -0.9271 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.7948 -2.5186 2.2134 38 1 0.3841 -2.0099 1.2545 39 1 1.8341 -2.6417 0.4382 40 1 3.8686 0.2957 1.0641 41 1 3.8610 -1.3769 0.4550 42 1 5.9204 -1.0619 2.1643 43 1 5.3418 -2.7922 4.3202 44 1 5.3499 -1.1199 4.9297 45 1 7.0816 -0.6863 6.5911 46 1 7.7883 -1.5829 8.7676 47 1 8.8210 -3.8189 8.8959 48 1 9.1479 -5.1355 6.8488 49 1 9.5902 -4.4239 4.0482 50 1 8.3242 -5.5484 4.5870 51 1 6.6174 -4.3504 3.3750 52 1 7.9915 -4.5347 2.2525 53 1 10.5040 -4.2188 1.1446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733906599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:53 Heat of formation + Delta-G solvation = 5.564986 kcal Electronic energy + Delta-G solvation = -31487.283036 eV Core-core repulsion = 27551.822145 eV Total energy + Delta-G solvation = -3935.460891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.14461 -40.53842 -38.69876 -37.74007 -35.61452 -34.02157 -33.47818 -32.97382 -31.50971 -30.47788 -29.82993 -28.54074 -27.17151 -25.95931 -25.15054 -24.13700 -23.49398 -22.62822 -21.38133 -20.83946 -20.19472 -18.69659 -17.98212 -17.39073 -17.17542 -17.12720 -16.73568 -16.12052 -15.95392 -15.84464 -15.65634 -15.62949 -15.24590 -14.98799 -14.76736 -14.21133 -14.08896 -13.91914 -13.76575 -13.75698 -13.43660 -13.29735 -13.13150 -12.99353 -12.84904 -12.73824 -12.69908 -12.66832 -12.53765 -12.32696 -12.21953 -12.04946 -11.94342 -11.78717 -11.54985 -11.53224 -11.23633 -10.71240 -10.47306 -9.91068 -9.56382 -9.31715 -9.26570 -8.68023 -7.83079 -5.27461 0.57153 0.61959 1.51122 1.53976 1.60084 1.74202 2.21738 2.52531 2.96580 3.05585 3.33336 3.57069 3.87077 3.96526 4.01005 4.06987 4.07892 4.16651 4.28297 4.31106 4.31857 4.37993 4.42949 4.44653 4.57989 4.58605 4.60068 4.67555 4.77663 4.80923 4.83656 4.92618 4.95681 4.97841 4.98243 5.04508 5.11275 5.12033 5.24058 5.25906 5.32516 5.41099 5.53459 5.58909 5.63927 5.69538 5.70370 5.84509 5.95585 5.99976 6.16653 6.26129 6.39720 6.73918 7.14386 7.38985 7.82357 8.40507 9.22653 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.003685 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.096700 B = 7597.459441 C = 9873.165243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.146 4.146 4 N -0.532 5.532 5 C 0.020 3.980 6 C 0.036 3.964 7 C 0.508 3.492 8 O -0.572 6.572 9 N -0.708 5.708 10 C 0.132 3.868 11 C 0.199 3.801 12 H 0.075 0.925 13 C -0.103 4.103 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.142 4.142 18 C -0.072 4.072 19 C -0.083 4.083 20 C 0.171 3.829 21 N -0.588 5.588 22 C -0.257 4.257 23 H 0.079 0.921 24 C -0.038 4.038 25 N -0.918 5.918 26 Si 0.958 3.042 27 H -0.290 1.290 28 H -0.265 1.265 29 H -0.305 1.305 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.022 0.978 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.410 0.590 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.133 0.867 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.125 0.875 49 H 0.067 0.933 50 H 0.058 0.942 51 H 0.004 0.996 52 H 0.066 0.934 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 6.191 1.795 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 C -0.204 4.204 4 N -0.258 5.258 5 C -0.128 4.128 6 C -0.094 4.094 7 C 0.295 3.705 8 O -0.452 6.452 9 N -0.360 5.360 10 C 0.005 3.995 11 C 0.091 3.909 12 H 0.093 0.907 13 C -0.105 4.105 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.160 4.160 18 C -0.073 4.073 19 C -0.122 4.122 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.386 4.386 23 H 0.097 0.903 24 C -0.235 4.235 25 N -0.563 5.563 26 Si 0.788 3.212 27 H -0.217 1.217 28 H -0.189 1.189 29 H -0.232 1.232 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.142 0.858 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.151 0.849 46 H 0.166 0.834 47 H 0.164 0.836 48 H 0.143 0.857 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.022 0.978 52 H 0.085 0.915 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.547 6.166 2.683 13.363 hybrid contribution 1.358 -0.745 -1.871 2.429 sum -10.189 5.421 0.812 11.570 Atomic orbital electron populations 1.21880 0.93101 1.02266 1.02720 1.21799 0.96758 0.95459 0.89686 1.21923 1.01125 0.94512 1.02824 1.61739 1.05559 1.18229 1.40253 1.22512 1.01217 0.88399 1.00637 1.22041 0.90156 1.03957 0.93288 1.20956 0.81975 0.77425 0.90171 1.90604 1.54013 1.51137 1.49409 1.45930 1.06994 1.66044 1.17001 1.21585 0.95396 0.97799 0.84682 1.19623 0.90786 0.95130 0.85391 0.90687 1.20137 0.99801 0.94766 0.95758 1.21333 1.00511 1.00225 0.92131 1.21331 0.99404 0.96374 0.97857 1.21329 0.99337 0.94992 0.98454 1.21391 1.01446 1.00874 0.92286 1.19883 0.97152 0.94832 0.95391 1.20805 1.01878 0.96245 0.93263 1.20699 0.92868 0.84428 0.97428 1.44191 1.69940 1.01158 1.15647 1.19382 1.17686 1.00785 1.00776 0.90294 1.25622 0.96262 0.99370 1.02259 1.70139 1.26978 1.23386 1.35755 0.85410 0.75950 0.78503 0.81380 1.21731 1.18921 1.23231 0.92391 0.90346 0.92464 0.93916 0.92340 0.92454 0.90284 0.92240 0.89748 0.95908 0.85757 0.91371 0.75270 0.94668 0.91610 0.84903 0.83386 0.83617 0.85719 0.91480 0.92336 0.97771 0.91525 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.84 71.98 0.64 -1.70 16 2 C 0.07 1.37 2.68 44.91 0.12 1.49 16 3 C -0.15 -2.46 8.99 71.98 0.65 -1.81 16 4 N -0.53 -13.72 4.37 -901.65 -3.94 -17.66 16 5 C 0.02 0.53 8.84 127.69 1.13 1.66 16 6 C 0.04 0.96 5.26 85.56 0.45 1.41 16 7 C 0.51 17.18 7.55 87.66 0.66 17.84 16 8 O -0.57 -23.00 14.31 -3.03 -0.04 -23.05 16 9 N -0.71 -24.19 5.39 -463.07 -2.49 -26.68 16 10 C 0.13 4.80 5.00 86.38 0.43 5.23 16 11 C 0.20 7.70 2.50 44.24 0.11 7.81 16 12 H 0.08 2.90 7.98 -2.39 -0.02 2.88 16 13 C -0.10 -3.86 5.17 -19.82 -0.10 -3.96 16 14 C -0.12 -3.83 9.34 22.35 0.21 -3.62 16 15 C -0.13 -3.52 10.05 22.21 0.22 -3.30 16 16 C -0.12 -3.37 10.04 22.20 0.22 -3.14 16 17 C -0.14 -4.66 9.59 22.37 0.21 -4.44 16 18 C -0.07 -2.83 5.76 -19.85 -0.11 -2.94 16 19 C -0.08 -3.58 5.78 29.91 0.17 -3.41 16 20 C 0.17 7.91 5.49 86.33 0.47 8.38 16 21 N -0.59 -26.48 2.30 -679.18 -1.56 -28.04 16 22 C -0.26 -12.30 8.71 84.03 0.73 -11.57 16 23 H 0.08 3.54 7.31 -2.91 -0.02 3.52 16 24 C -0.04 -1.93 4.93 84.86 0.42 -1.51 16 25 N -0.92 -49.44 10.15 21.65 0.22 -49.23 16 26 Si 0.96 41.14 29.59 68.60 2.03 43.17 16 27 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 29 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.94 6.26 -2.39 -0.01 0.92 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.96 6.20 -2.38 -0.01 0.94 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.06 1.94 5.88 -2.39 -0.01 1.93 16 38 H 0.08 1.91 6.01 -2.39 -0.01 1.89 16 39 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.12 2.77 5.83 -2.39 -0.01 2.76 16 41 H 0.07 1.75 8.12 -2.38 -0.02 1.73 16 42 H 0.41 13.82 6.69 -92.70 -0.62 13.20 16 43 H 0.03 1.44 7.53 -2.39 -0.02 1.42 16 44 H 0.07 2.26 8.03 -2.38 -0.02 2.24 16 45 H 0.13 3.53 8.05 -2.91 -0.02 3.51 16 46 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 47 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 48 H 0.12 3.67 8.05 -2.91 -0.02 3.64 16 49 H 0.07 3.32 7.16 -2.39 -0.02 3.30 16 50 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 51 H 0.00 0.20 7.46 -2.39 -0.02 0.18 16 52 H 0.07 3.45 5.91 -2.38 -0.01 3.44 16 53 H 0.25 13.19 8.31 -92.70 -0.77 12.42 16 Total: -1.00 -61.52 405.83 1.13 -60.38 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.28 Total: 38.67 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.64 Total: 2.43 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -7.77 Total: -121.60 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -61.52 1.13 -60.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733906599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.948 kcal (2) G-P(sol) polarization free energy of solvation -61.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds