Wall clock time and date at job start Wed Apr 1 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46996 * 2 1 4 4 C 1.53001 * 109.47007 * 120.00011 * 2 1 3 5 5 H 1.08999 * 109.47184 * 295.87460 * 4 2 1 6 6 C 1.50697 * 109.47257 * 55.87796 * 4 2 1 7 7 O 1.21286 * 120.00186 * 34.91058 * 6 4 2 8 8 N 1.34776 * 120.00144 * 214.91276 * 6 4 2 9 9 C 1.46501 * 119.99692 * 4.85126 * 8 6 4 10 10 C 1.46492 * 120.00300 * 184.85439 * 8 6 4 11 11 H 1.09004 * 109.47309 * 359.97438 * 10 8 6 12 12 C 1.52999 * 109.47251 * 240.00029 * 10 8 6 13 13 N 1.46502 * 109.47350 * 54.99821 * 12 10 8 14 14 C 1.36932 * 120.00403 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00077 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00208 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99850 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00097 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46946 * 60.00085 * 18 16 14 20 20 H 1.48497 * 109.47281 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47007 * 299.99838 * 18 16 14 22 22 C 1.52999 * 109.47364 * 119.99710 * 10 8 6 23 23 C 1.52997 * 117.50394 * 248.74687 * 22 10 8 24 24 C 1.53003 * 117.49948 * 180.02562 * 22 10 8 25 25 C 1.50701 * 109.46701 * 175.87497 * 4 2 1 26 26 C 1.38677 * 120.41952 * 119.72089 * 25 4 2 27 27 C 1.38622 * 118.42067 * 179.78310 * 26 25 4 28 28 C 1.38223 * 119.16277 * 0.51485 * 27 26 25 29 29 N 1.31856 * 120.76336 * 359.72273 * 28 27 26 30 30 C 1.31878 * 121.72318 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47058 * 304.80004 * 1 2 3 32 32 H 1.08996 * 109.47563 * 64.80502 * 1 2 3 33 33 H 1.09009 * 109.46836 * 184.80689 * 1 2 3 34 34 H 1.08997 * 109.46695 * 240.00138 * 2 1 3 35 35 H 1.09003 * 109.47293 * 60.00073 * 3 2 1 36 36 H 1.09000 * 109.47537 * 180.02562 * 3 2 1 37 37 H 1.09007 * 109.47234 * 300.00254 * 3 2 1 38 38 H 1.09006 * 109.46789 * 84.46210 * 9 8 6 39 39 H 1.08999 * 109.47495 * 324.46276 * 9 8 6 40 40 H 1.08997 * 109.47218 * 204.45624 * 9 8 6 41 41 H 1.09000 * 109.47570 * 174.99689 * 12 10 8 42 42 H 1.08999 * 109.46888 * 295.00191 * 12 10 8 43 43 H 0.97001 * 119.99475 * 0.02562 * 13 12 10 44 44 H 0.97003 * 119.99536 * 179.97438 * 17 16 14 45 45 H 1.09000 * 115.54670 * 34.42395 * 22 10 8 46 46 H 1.09002 * 117.49153 * 0.02562 * 23 22 10 47 47 H 1.08999 * 117.50109 * 145.02110 * 23 22 10 48 48 H 1.08994 * 117.50014 * 214.97647 * 24 22 10 49 49 H 1.08997 * 117.49939 * 359.97438 * 24 22 10 50 50 H 1.08001 * 120.78670 * 0.02562 * 26 25 4 51 51 H 1.08003 * 120.41518 * 180.21837 * 27 26 25 52 52 H 1.08003 * 119.62001 * 179.74724 * 28 27 26 53 53 H 1.08001 * 119.61653 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7383 -0.1665 2.1377 6 6 1.4560 -2.1095 1.3014 7 8 1.2677 -2.7272 0.2747 8 7 1.1430 -2.6648 2.4889 9 6 1.2703 -1.8811 3.7201 10 6 0.6756 -4.0518 2.5485 11 1 0.6455 -4.4687 1.5418 12 6 -0.7269 -4.0917 3.1585 13 7 -1.6151 -3.2081 2.3991 14 6 -2.9289 -3.0803 2.7633 15 1 -3.3103 -3.6306 3.6107 16 6 -3.7703 -2.2427 2.0440 17 7 -3.3051 -1.5709 1.0122 18 14 -5.5623 -2.0679 2.5413 19 1 -5.6422 -1.5496 3.9306 20 1 -6.2415 -1.1212 1.6205 21 1 -6.2278 -3.3934 2.4684 22 6 1.6316 -4.8755 3.4136 23 6 2.4868 -5.9324 2.7119 24 6 1.3143 -6.3606 3.5998 25 6 3.5436 -0.8103 1.1991 26 6 4.3151 -0.2264 2.1926 27 6 5.6942 -0.3375 2.1078 28 6 6.2511 -1.0125 1.0379 29 7 5.4864 -1.5514 0.1086 30 6 4.1712 -1.4696 0.1595 31 1 -0.3633 0.5865 0.8439 32 1 -0.3634 0.4374 -0.9298 33 1 -0.3633 -1.0242 0.0861 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 0.3678 -1.2880 3.8682 39 1 2.1319 -1.2182 3.6415 40 1 1.4057 -2.5541 4.5668 41 1 -1.1105 -5.1113 3.1215 42 1 -0.6819 -3.7577 4.1951 43 1 -1.2724 -2.7135 1.6382 44 1 -3.8931 -0.9858 0.5093 45 1 2.0763 -4.3469 4.2568 46 1 2.3686 -6.0406 1.6337 47 1 3.4941 -6.0994 3.0936 48 1 1.5514 -6.8089 4.5646 49 1 0.4242 -6.7508 3.1063 50 1 3.8522 0.2991 3.0148 51 1 6.3258 0.1020 2.8657 52 1 7.3249 -1.1000 0.9624 53 1 3.5776 -1.9232 -0.6205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734314558.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:36 Heat of formation + Delta-G solvation = 15.319653 kcal Electronic energy + Delta-G solvation = -32541.090873 eV Core-core repulsion = 28606.052976 eV Total energy + Delta-G solvation = -3935.037897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.96954 -40.66741 -38.99662 -36.95958 -36.54281 -35.74388 -33.56591 -33.09884 -32.40856 -30.17112 -28.41482 -27.90444 -27.60374 -25.94575 -24.58595 -23.93185 -23.38622 -22.91640 -22.11160 -20.76988 -19.87075 -19.10986 -18.38626 -18.09758 -17.57647 -16.97605 -16.73809 -16.58098 -16.09417 -15.96195 -15.42196 -15.28355 -15.07506 -14.96917 -14.76182 -14.51628 -14.32646 -14.04793 -13.95030 -13.75831 -13.50663 -13.36136 -13.12325 -13.09602 -12.98929 -12.85131 -12.74222 -12.69911 -12.44289 -12.22804 -12.15095 -12.02334 -11.82261 -11.75602 -11.63510 -11.34706 -11.00506 -10.91556 -10.89103 -10.54390 -10.36201 -9.84737 -9.52947 -8.95103 -7.87597 -5.17791 0.13802 0.36367 1.46193 1.49054 1.55015 1.68993 2.02381 2.56586 2.83985 2.89306 3.43091 3.46588 3.51929 3.62872 3.71701 3.76476 3.95671 3.97970 4.05700 4.08595 4.10578 4.14286 4.23047 4.30680 4.34675 4.40370 4.45387 4.51235 4.58339 4.65544 4.69117 4.71904 4.75671 4.79321 4.87061 4.88482 4.94325 5.00588 5.01590 5.04592 5.07512 5.20375 5.22968 5.23852 5.27638 5.29757 5.43388 5.50428 5.52903 5.69218 5.79891 6.30262 6.48512 7.04892 7.26255 7.37765 8.13224 8.38487 9.33246 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.010500 B = 0.004187 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.950597 B = 6685.972098 C = 8549.321851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.133 4.133 4 C -0.048 4.048 5 H 0.116 0.884 6 C 0.524 3.476 7 O -0.579 6.579 8 N -0.594 5.594 9 C 0.074 3.926 10 C 0.171 3.829 11 H 0.060 0.940 12 C 0.150 3.850 13 N -0.740 5.740 14 C -0.249 4.249 15 H 0.073 0.927 16 C -0.067 4.067 17 N -0.954 5.954 18 Si 0.969 3.031 19 H -0.276 1.276 20 H -0.297 1.297 21 H -0.284 1.284 22 C -0.163 4.163 23 C -0.174 4.174 24 C -0.160 4.160 25 C -0.120 4.120 26 C -0.065 4.065 27 C -0.157 4.157 28 C 0.083 3.917 29 N -0.512 5.512 30 C 0.093 3.907 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.023 0.977 42 H 0.034 0.966 43 H 0.374 0.626 44 H 0.248 0.752 45 H 0.128 0.872 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.122 0.878 49 H 0.084 0.916 50 H 0.166 0.834 51 H 0.175 0.825 52 H 0.181 0.819 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.159 3.874 8.571 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 C -0.190 4.190 4 C -0.069 4.069 5 H 0.134 0.866 6 C 0.313 3.687 7 O -0.458 6.458 8 N -0.325 5.325 9 C -0.068 4.068 10 C 0.067 3.933 11 H 0.079 0.921 12 C 0.023 3.977 13 N -0.383 5.383 14 C -0.381 4.381 15 H 0.091 0.909 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.798 3.202 19 H -0.202 1.202 20 H -0.224 1.224 21 H -0.210 1.210 22 C -0.182 4.182 23 C -0.211 4.211 24 C -0.197 4.197 25 C -0.123 4.123 26 C -0.091 4.091 27 C -0.176 4.176 28 C -0.074 4.074 29 N -0.220 5.220 30 C -0.063 4.063 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.207 0.793 44 H 0.057 0.943 45 H 0.146 0.854 46 H 0.091 0.909 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.102 0.898 50 H 0.184 0.816 51 H 0.192 0.808 52 H 0.198 0.802 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.295 3.074 7.453 22.770 hybrid contribution -2.063 0.382 -0.066 2.099 sum 19.232 3.457 7.387 20.890 Atomic orbital electron populations 1.21669 0.94922 1.01215 1.01186 1.20958 0.94971 0.97211 0.95750 1.21748 1.00890 0.93469 1.02905 1.20307 0.91818 0.92594 1.02217 0.86561 1.20805 0.76723 0.88356 0.82805 1.90659 1.55511 1.64927 1.34740 1.47678 1.64670 1.12686 1.07474 1.21969 1.01973 0.96602 0.86229 1.20616 0.92259 0.81711 0.98726 0.92127 1.21048 0.88638 0.93301 0.94739 1.42482 1.07235 1.52818 1.35749 1.19510 0.87327 1.20860 1.10357 0.90920 1.25488 1.01877 1.00262 0.98429 1.69855 1.35773 1.32855 1.21902 0.85296 0.80633 0.77025 0.77223 1.20188 1.22387 1.21021 1.22465 1.02031 0.91591 1.02096 1.23019 0.96845 1.03141 0.98119 1.23020 0.99213 0.95222 1.02290 1.20294 0.93920 1.00764 0.97277 1.21873 0.94176 0.95855 0.97202 1.22503 0.95376 0.99747 0.99974 1.23378 1.01249 0.92904 0.89842 1.67700 1.06028 1.19352 1.28968 1.22469 0.90738 0.95917 0.97171 0.93140 0.93049 0.95026 0.92145 0.91224 0.92039 0.92029 0.93588 0.88812 0.88931 0.95938 0.94807 0.79310 0.94348 0.85432 0.90876 0.86902 0.85993 0.89793 0.81638 0.80762 0.80234 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.95 71.98 0.64 -4.42 16 2 C -0.07 -2.12 2.03 -10.79 -0.02 -2.14 16 3 C -0.13 -2.99 9.00 71.98 0.65 -2.35 16 4 C -0.05 -1.32 1.24 -12.29 -0.02 -1.34 16 5 H 0.12 2.75 6.05 -2.39 -0.01 2.73 16 6 C 0.52 18.97 4.89 87.66 0.43 19.40 16 7 O -0.58 -26.23 14.39 -3.05 -0.04 -26.27 16 8 N -0.59 -19.55 2.24 -822.60 -1.85 -21.39 16 9 C 0.07 1.82 8.87 127.77 1.13 2.95 16 10 C 0.17 6.05 2.41 44.99 0.11 6.16 16 11 H 0.06 2.62 6.67 -2.39 -0.02 2.61 16 12 C 0.15 6.16 5.32 86.38 0.46 6.62 16 13 N -0.74 -38.82 5.43 -343.45 -1.87 -40.68 16 14 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 15 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 17 N -0.95 -58.74 13.06 21.65 0.28 -58.45 16 18 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 22 C -0.16 -4.22 5.12 -10.79 -0.06 -4.27 16 23 C -0.17 -4.23 10.19 30.66 0.31 -3.92 16 24 C -0.16 -3.68 9.80 30.66 0.30 -3.38 16 25 C -0.12 -2.83 3.68 -19.77 -0.07 -2.90 16 26 C -0.07 -1.03 9.38 22.47 0.21 -0.82 16 27 C -0.16 -2.04 10.11 22.36 0.23 -1.81 16 28 C 0.08 1.47 11.18 84.69 0.95 2.42 16 29 N -0.51 -13.43 10.36 -195.85 -2.03 -15.46 16 30 C 0.09 2.65 9.94 84.67 0.84 3.49 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.03 1.51 6.37 -2.38 -0.02 1.49 16 34 H 0.06 2.04 7.12 -2.39 -0.02 2.02 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.25 7.35 -2.39 -0.02 1.24 16 37 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.09 1.63 6.01 -2.39 -0.01 1.62 16 40 H 0.09 1.86 6.50 -2.39 -0.02 1.84 16 41 H 0.02 0.95 7.47 -2.39 -0.02 0.93 16 42 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 43 H 0.37 21.51 7.06 -92.71 -0.65 20.86 16 44 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.13 2.72 6.66 -2.39 -0.02 2.70 16 46 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 47 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 49 H 0.08 2.19 7.66 -2.39 -0.02 2.17 16 50 H 0.17 1.55 7.93 -2.91 -0.02 1.53 16 51 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 52 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 53 H 0.13 4.32 7.10 -2.91 -0.02 4.30 16 Total: -1.00 -76.71 419.07 4.17 -72.54 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: 0.25 Total: 44.02 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 7.40 Total: -2.98 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -5.46 Total: -136.00 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.04 Total: -26.27 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.71 4.17 -72.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734314558.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.861 kcal (2) G-P(sol) polarization free energy of solvation -76.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds