Wall clock time and date at job start Wed Apr 1 2020 03:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.53007 * 109.46893 * 120.00304 * 2 1 3 5 5 H 1.08999 * 109.47033 * 296.15641 * 4 2 1 6 6 C 1.50703 * 109.46740 * 176.15976 * 4 2 1 7 7 O 1.21273 * 120.00247 * 324.13519 * 6 4 2 8 8 N 1.34777 * 119.99808 * 144.13522 * 6 4 2 9 9 C 1.46509 * 119.99951 * 5.12015 * 8 6 4 10 10 C 1.46497 * 119.99931 * 185.12254 * 8 6 4 11 11 H 1.08997 * 109.47290 * 359.97438 * 10 8 6 12 12 C 1.53000 * 109.47021 * 239.99699 * 10 8 6 13 13 N 1.46498 * 109.46830 * 55.00087 * 12 10 8 14 14 C 1.36940 * 119.99605 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00516 * 359.97438 * 14 13 12 16 16 C 1.38820 * 119.99798 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99608 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99901 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46887 * 120.00414 * 18 16 14 21 21 H 1.48501 * 109.47210 * 239.99913 * 18 16 14 22 22 C 1.53005 * 109.47223 * 119.99946 * 10 8 6 23 23 C 1.52995 * 117.50092 * 248.74735 * 22 10 8 24 24 C 1.52999 * 117.49971 * 180.08480 * 22 10 8 25 25 C 1.50695 * 109.47394 * 56.16215 * 4 2 1 26 26 C 1.38676 * 120.41909 * 240.00238 * 25 4 2 27 27 C 1.38624 * 118.42242 * 180.02562 * 26 25 4 28 28 C 1.38223 * 119.16000 * 359.97438 * 27 26 25 29 29 N 1.31850 * 120.76568 * 0.02562 * 28 27 26 30 30 C 1.31892 * 121.72657 * 359.70699 * 29 28 27 31 31 H 1.08999 * 109.47431 * 300.00025 * 1 2 3 32 32 H 1.09000 * 109.47394 * 60.00021 * 1 2 3 33 33 H 1.09002 * 109.47405 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46941 * 239.99823 * 2 1 3 35 35 H 1.09000 * 109.47310 * 185.36158 * 3 2 1 36 36 H 1.08996 * 109.47573 * 305.36930 * 3 2 1 37 37 H 1.09006 * 109.47073 * 65.36830 * 3 2 1 38 38 H 1.09005 * 109.47091 * 267.42624 * 9 8 6 39 39 H 1.09001 * 109.46851 * 27.42592 * 9 8 6 40 40 H 1.08996 * 109.46850 * 147.43293 * 9 8 6 41 41 H 1.08999 * 109.47284 * 174.99952 * 12 10 8 42 42 H 1.08998 * 109.47228 * 295.00355 * 12 10 8 43 43 H 0.97002 * 120.00335 * 359.97438 * 13 12 10 44 44 H 0.97002 * 119.99723 * 180.02562 * 17 16 14 45 45 H 1.08999 * 115.54850 * 34.41752 * 22 10 8 46 46 H 1.09005 * 117.49759 * 359.97438 * 23 22 10 47 47 H 1.08993 * 117.50348 * 145.02029 * 23 22 10 48 48 H 1.09000 * 117.49848 * 214.98244 * 24 22 10 49 49 H 1.09001 * 117.49727 * 359.97438 * 24 22 10 50 50 H 1.08006 * 120.78214 * 359.97438 * 26 25 4 51 51 H 1.07999 * 120.41690 * 180.02562 * 27 26 25 52 52 H 1.07999 * 119.61650 * 179.97438 * 28 27 26 53 53 H 1.07998 * 119.61696 * 180.31041 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.7339 -0.1693 2.1379 6 6 3.5440 -0.8043 1.2026 7 8 4.1097 -0.9671 0.1423 8 7 4.2603 -0.6974 2.3392 9 6 3.5754 -0.6135 3.6316 10 6 5.7239 -0.6653 2.2823 11 1 6.0488 -0.7388 1.2445 12 6 6.2912 -1.8422 3.0784 13 7 5.7145 -3.0928 2.5789 14 6 6.0769 -4.2870 3.1426 15 1 6.7880 -4.3070 3.9552 16 6 5.5309 -5.4722 2.6689 17 7 4.6653 -5.4480 1.6777 18 14 6.0257 -7.1013 3.4374 19 1 7.0073 -6.8578 4.5248 20 1 4.8234 -7.7706 3.9957 21 1 6.6402 -7.9706 2.4020 22 6 6.2289 0.6479 2.8836 23 6 6.8696 1.6603 1.9322 24 6 7.7416 0.8749 2.9150 25 6 1.4615 -2.1120 1.2977 26 6 0.6734 -2.5078 2.3680 27 6 0.1630 -3.7967 2.3704 28 6 0.4540 -4.6383 1.3133 29 7 1.2072 -4.2279 0.3120 30 6 1.7054 -3.0072 0.2738 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1257 1.4440 -0.0960 36 1 1.6003 1.9833 -0.8379 37 1 1.7572 1.9278 0.9342 38 1 3.4208 0.4333 3.8935 39 1 2.6113 -1.1177 3.5653 40 1 4.1847 -1.0933 4.3975 41 1 7.3747 -1.8702 2.9632 42 1 6.0408 -1.7222 4.1325 43 1 5.0760 -3.0750 1.8488 44 1 4.2835 -6.2761 1.3469 45 1 5.6439 1.0396 3.7157 46 1 6.9318 1.3907 0.8778 47 1 6.7065 2.7181 2.1385 48 1 8.1518 1.4163 3.7675 49 1 8.3771 0.0885 2.5076 50 1 0.4631 -1.8282 3.1806 51 1 -0.4549 -4.1385 3.1876 52 1 0.0606 -5.6441 1.3079 53 1 2.3141 -2.7053 -0.5656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734314560.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:46 Heat of formation + Delta-G solvation = 15.351291 kcal Electronic energy + Delta-G solvation = -32874.361094 eV Core-core repulsion = 28939.324569 eV Total energy + Delta-G solvation = -3935.036525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.91242 -40.58734 -38.95147 -36.96904 -36.53858 -35.71887 -33.49245 -33.08669 -32.33673 -30.14306 -28.40462 -27.86542 -27.59961 -25.91505 -24.54294 -23.89227 -23.39520 -22.88506 -22.03784 -20.71808 -19.87339 -19.10658 -18.35607 -18.06540 -17.54283 -16.92934 -16.74157 -16.57877 -16.13049 -15.83815 -15.46629 -15.31467 -15.11908 -14.90356 -14.76500 -14.44340 -14.31987 -13.96287 -13.79311 -13.69074 -13.46685 -13.42610 -13.14513 -13.11109 -12.96983 -12.90832 -12.75898 -12.65877 -12.39976 -12.20632 -12.06863 -12.04353 -11.82314 -11.75179 -11.57460 -11.33588 -10.98815 -10.89817 -10.87561 -10.47967 -10.24407 -9.73669 -9.49997 -8.95800 -7.87320 -5.18653 0.23663 0.48757 1.41635 1.43682 1.53084 1.71175 2.05206 2.54078 2.90709 2.96804 3.42589 3.53480 3.55368 3.66183 3.78886 3.85197 3.97564 4.03101 4.11035 4.11096 4.13865 4.16324 4.27925 4.31046 4.34811 4.42513 4.48979 4.52524 4.58421 4.70888 4.75827 4.77641 4.79752 4.84153 4.85675 4.91313 4.98941 5.01004 5.03482 5.05200 5.10044 5.23776 5.24906 5.28284 5.30375 5.31985 5.42102 5.47386 5.49205 5.69241 5.88609 6.26914 6.51179 7.19344 7.28474 7.35530 8.11731 8.35931 9.31874 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007343 B = 0.006169 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3812.188662 B = 4537.618328 C = 7531.274458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C -0.140 4.140 4 C -0.044 4.044 5 H 0.130 0.870 6 C 0.522 3.478 7 O -0.581 6.581 8 N -0.594 5.594 9 C 0.072 3.928 10 C 0.172 3.828 11 H 0.060 0.940 12 C 0.149 3.851 13 N -0.738 5.738 14 C -0.248 4.248 15 H 0.073 0.927 16 C -0.067 4.067 17 N -0.946 5.946 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.301 1.301 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.166 4.166 25 C -0.121 4.121 26 C -0.068 4.068 27 C -0.167 4.167 28 C 0.079 3.921 29 N -0.508 5.508 30 C 0.106 3.894 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.034 0.966 43 H 0.372 0.628 44 H 0.244 0.756 45 H 0.129 0.871 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.080 0.920 50 H 0.173 0.827 51 H 0.167 0.833 52 H 0.162 0.838 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 18.364 6.165 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.197 4.197 4 C -0.065 4.065 5 H 0.148 0.852 6 C 0.311 3.689 7 O -0.461 6.461 8 N -0.324 5.324 9 C -0.070 4.070 10 C 0.067 3.933 11 H 0.078 0.922 12 C 0.021 3.979 13 N -0.381 5.381 14 C -0.380 4.380 15 H 0.091 0.909 16 C -0.261 4.261 17 N -0.595 5.595 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.229 1.229 22 C -0.179 4.179 23 C -0.207 4.207 24 C -0.203 4.203 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.186 4.186 28 C -0.078 4.078 29 N -0.216 5.216 30 C -0.051 4.051 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.203 0.797 44 H 0.053 0.947 45 H 0.147 0.853 46 H 0.093 0.907 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.099 0.901 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.179 0.821 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.677 17.595 5.067 20.710 hybrid contribution 0.462 -1.336 0.116 1.419 sum -9.215 16.259 5.183 19.394 Atomic orbital electron populations 1.21763 0.92630 1.01497 1.03331 1.20983 0.97168 0.96398 0.95051 1.21790 1.00020 0.94509 1.03381 1.20382 0.89497 0.93548 1.03115 0.85220 1.20882 0.90257 0.74583 0.83146 1.90655 1.73189 1.50649 1.31602 1.47682 1.05764 1.71697 1.07282 1.21999 0.97868 1.03099 0.83990 1.20610 0.80012 0.93538 0.99114 0.92185 1.21061 0.95382 0.85133 0.96293 1.42461 1.52371 1.01499 1.41752 1.19534 1.19964 0.85529 1.12924 0.90939 1.25504 1.00301 1.00664 0.99597 1.69896 1.33958 1.26013 1.29671 0.85201 0.77218 0.80569 0.77490 1.19015 1.22010 1.22867 1.22424 0.96974 0.95598 1.02944 1.23027 1.03899 0.97973 0.95760 1.22998 0.91960 1.02809 1.02572 1.20344 0.99913 0.95914 0.96224 1.21810 0.94010 0.96733 0.96793 1.22403 1.01771 0.94543 0.99877 1.23093 0.93784 1.00668 0.90258 1.67538 1.09009 1.16380 1.28716 1.22301 0.95756 0.89029 0.98021 0.90192 0.91482 0.94090 0.93176 0.94800 0.91104 0.90401 0.88943 0.90709 0.91456 0.96066 0.94820 0.79654 0.94719 0.85268 0.90730 0.86420 0.86126 0.90136 0.81001 0.81513 0.82090 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.89 71.98 0.64 -1.92 16 2 C -0.08 -1.90 2.02 -10.79 -0.02 -1.92 16 3 C -0.14 -2.89 8.90 71.98 0.64 -2.25 16 4 C -0.04 -1.17 1.18 -12.28 -0.01 -1.19 16 5 H 0.13 2.46 6.29 -2.39 -0.02 2.45 16 6 C 0.52 18.52 5.13 87.66 0.45 18.97 16 7 O -0.58 -26.19 14.78 -3.01 -0.04 -26.24 16 8 N -0.59 -19.04 2.24 -822.57 -1.85 -20.88 16 9 C 0.07 1.71 8.83 127.77 1.13 2.84 16 10 C 0.17 5.97 2.42 44.99 0.11 6.08 16 11 H 0.06 2.57 6.67 -2.39 -0.02 2.55 16 12 C 0.15 6.13 5.26 86.38 0.45 6.58 16 13 N -0.74 -39.38 5.43 -343.45 -1.87 -41.25 16 14 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 15 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.95 -60.50 13.06 21.65 0.28 -60.21 16 18 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 21 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 22 C -0.16 -3.95 5.21 -10.79 -0.06 -4.01 16 23 C -0.17 -3.78 10.18 30.62 0.31 -3.46 16 24 C -0.17 -3.69 9.80 30.62 0.30 -3.39 16 25 C -0.12 -3.82 3.16 -19.78 -0.06 -3.88 16 26 C -0.07 -1.73 9.03 22.47 0.20 -1.52 16 27 C -0.17 -4.48 10.11 22.36 0.23 -4.25 16 28 C 0.08 2.70 11.18 84.69 0.95 3.64 16 29 N -0.51 -21.42 10.36 -195.85 -2.03 -23.45 16 30 C 0.11 4.31 10.02 84.67 0.85 5.15 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.91 7.11 -2.39 -0.02 0.90 16 34 H 0.05 1.59 7.12 -2.39 -0.02 1.58 16 35 H 0.03 0.87 7.33 -2.39 -0.02 0.85 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.09 1.40 7.98 -2.38 -0.02 1.38 16 39 H 0.07 1.66 5.34 -2.39 -0.01 1.65 16 40 H 0.07 1.77 6.54 -2.39 -0.02 1.75 16 41 H 0.02 0.91 7.48 -2.39 -0.02 0.89 16 42 H 0.03 1.31 6.90 -2.39 -0.02 1.30 16 43 H 0.37 22.05 7.06 -92.71 -0.65 21.39 16 44 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.13 2.57 7.36 -2.39 -0.02 2.55 16 46 H 0.07 1.97 8.05 -2.38 -0.02 1.95 16 47 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.08 2.09 7.67 -2.39 -0.02 2.07 16 50 H 0.17 2.75 7.78 -2.91 -0.02 2.73 16 51 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 52 H 0.16 4.74 8.06 -2.91 -0.02 4.71 16 53 H 0.12 5.41 7.14 -2.91 -0.02 5.39 16 Total: -1.00 -81.06 418.48 4.18 -76.88 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: 0.25 Total: 46.62 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 7.41 Total: -1.50 kcal Atomic # 7 Polarization: -140.34 SS G_CDS: -5.46 Total: -145.79 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.04 Total: -26.24 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -81.06 4.18 -76.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734314560.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.230 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds