Wall clock time and date at job start Wed Apr 1 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47446 * 2 1 4 4 C 1.52998 * 109.47446 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46984 * 305.00350 * 4 3 2 6 6 C 1.50699 * 109.47345 * 185.00161 * 4 3 2 7 7 O 1.21286 * 120.00289 * 240.00331 * 6 4 3 8 8 N 1.34771 * 120.00044 * 60.00093 * 6 4 3 9 9 C 1.46502 * 120.00210 * 185.28096 * 8 6 4 10 10 C 1.53000 * 109.47022 * 173.97507 * 9 8 6 11 11 C 1.52998 * 109.47392 * 53.97289 * 9 8 6 12 12 N 1.46494 * 109.47128 * 60.00200 * 11 9 8 13 13 C 1.36940 * 119.99826 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00372 * 359.71723 * 13 12 11 15 15 C 1.38815 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00367 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99578 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47219 * 90.00112 * 17 15 13 19 19 H 1.48504 * 109.47045 * 209.99990 * 17 15 13 20 20 H 1.48493 * 109.47397 * 329.99794 * 17 15 13 21 21 C 1.53003 * 109.46890 * 293.97012 * 9 8 6 22 22 C 1.53001 * 117.49629 * 3.12401 * 21 9 8 23 23 C 1.52994 * 117.50129 * 294.46320 * 21 9 8 24 24 C 1.50701 * 109.47068 * 64.99796 * 4 3 2 25 25 C 1.38230 * 119.61268 * 85.00427 * 24 4 3 26 26 C 1.38631 * 119.15940 * 179.97438 * 25 24 4 27 27 C 1.38677 * 118.42056 * 359.97438 * 26 25 24 28 28 C 1.38180 * 119.16059 * 0.02562 * 27 26 25 29 29 N 1.31848 * 119.62229 * 264.72598 * 24 4 3 30 30 H 1.08998 * 109.46682 * 59.99969 * 1 2 3 31 31 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46761 * 300.00187 * 1 2 3 33 33 H 1.09002 * 109.47098 * 240.00114 * 2 1 3 34 34 H 1.09004 * 109.47349 * 120.00069 * 2 1 3 35 35 H 1.09002 * 109.46878 * 59.99980 * 3 2 1 36 36 H 1.09004 * 109.46903 * 300.00342 * 3 2 1 37 37 H 0.97004 * 119.99900 * 5.27246 * 8 6 4 38 38 H 1.09000 * 109.47320 * 299.99343 * 10 9 8 39 39 H 1.08991 * 109.47812 * 60.00111 * 10 9 8 40 40 H 1.09007 * 109.46768 * 180.02562 * 10 9 8 41 41 H 1.09001 * 109.47014 * 300.00132 * 11 9 8 42 42 H 1.08996 * 109.47333 * 180.02562 * 11 9 8 43 43 H 0.97002 * 120.00417 * 359.97438 * 12 11 9 44 44 H 0.97003 * 119.99995 * 180.02562 * 16 15 13 45 45 H 1.08996 * 115.54774 * 148.78764 * 21 9 8 46 46 H 1.08996 * 117.49985 * 359.97438 * 22 21 9 47 47 H 1.09002 * 117.49934 * 145.01517 * 22 21 9 48 48 H 1.08999 * 117.50189 * 214.97972 * 23 21 9 49 49 H 1.09001 * 117.50035 * 359.97438 * 23 21 9 50 50 H 1.07997 * 120.42513 * 359.97438 * 25 24 4 51 51 H 1.08004 * 120.78957 * 180.02562 * 26 25 24 52 52 H 1.08000 * 120.41791 * 180.02562 * 27 26 25 53 53 H 1.08004 * 119.61512 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0724 2.8579 0.1245 7 8 4.7700 3.3322 -0.7469 8 7 3.7464 3.5966 1.2036 9 6 4.1366 5.0071 1.2707 10 6 3.5207 5.6478 2.5162 11 6 3.6353 5.7350 0.0218 12 7 2.1755 5.6351 -0.0487 13 6 1.4990 6.2150 -1.0885 14 1 2.0412 6.7499 -1.8542 15 6 0.1156 6.1208 -1.1552 16 7 -0.5347 6.6785 -2.1543 17 14 -0.8230 5.2023 0.1734 18 1 -1.1879 6.1436 1.2624 19 1 -2.0571 4.6157 -0.4080 20 1 0.0298 4.1174 0.7219 21 6 5.6612 5.1115 1.3445 22 6 6.4631 3.8111 1.2619 23 6 6.3478 4.5563 2.5939 24 6 4.0729 0.8418 -1.2867 25 6 4.2024 1.6397 -2.4080 26 6 4.6664 1.0774 -3.5872 27 6 4.9847 -0.2723 -3.5944 28 6 4.8295 -1.0068 -2.4343 29 7 4.3895 -0.4375 -1.3291 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.2533 3.1944 1.9357 38 1 2.4345 5.5735 2.4637 39 1 3.8778 5.1294 3.4059 40 1 3.8107 6.6974 2.5659 41 1 4.0740 5.2785 -0.8654 42 1 3.9260 6.7843 0.0716 43 1 1.6881 5.1575 0.6407 44 1 -1.5014 6.6130 -2.2006 45 1 6.0944 5.9999 0.8849 46 1 5.9045 2.8812 1.1554 47 1 7.4240 3.8441 0.7483 48 1 7.2328 5.0793 2.9563 49 1 5.7133 4.1171 3.3637 50 1 3.9454 2.6878 -2.3661 51 1 4.7781 1.6766 -4.4789 52 1 5.3494 -0.7433 -4.4953 53 1 5.0748 -2.0586 -2.4318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753523493.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:52 Heat of formation + Delta-G solvation = 25.015991 kcal Electronic energy + Delta-G solvation = -32851.134970 eV Core-core repulsion = 28916.517538 eV Total energy + Delta-G solvation = -3934.617432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.12997 -40.88221 -38.63119 -36.74812 -36.68137 -34.93817 -33.50220 -33.32469 -32.94235 -31.62138 -29.85960 -27.89534 -26.08964 -25.27145 -24.46272 -23.79634 -23.10504 -22.77556 -22.15328 -21.29511 -20.49535 -19.69137 -18.19479 -17.95328 -17.20442 -16.97358 -16.80290 -16.54681 -16.37575 -16.08167 -15.46165 -15.35717 -15.23712 -15.02627 -14.72576 -14.53438 -14.29537 -14.22696 -13.83810 -13.69036 -13.51575 -13.40563 -13.32320 -13.20163 -12.99119 -12.82402 -12.43779 -12.39950 -12.33359 -12.12682 -12.04563 -11.99317 -11.92093 -11.79340 -11.59152 -11.21465 -11.03823 -10.95741 -10.75032 -10.40291 -10.22158 -9.91765 -9.81291 -9.21695 -8.01088 -5.32937 0.21496 0.41220 1.32326 1.39182 1.46379 1.68429 2.16786 2.48365 2.90456 2.96031 3.25870 3.30565 3.52297 3.59656 3.90923 3.94344 3.94715 3.98878 4.00906 4.06242 4.09264 4.20224 4.27598 4.28347 4.31244 4.37255 4.46847 4.56080 4.61059 4.67792 4.75563 4.81957 4.85283 4.90198 4.90954 4.95494 4.96427 5.01620 5.10048 5.17705 5.20708 5.25287 5.28924 5.30849 5.31704 5.33436 5.40076 5.42866 5.69809 5.77723 5.84669 6.21406 6.64896 7.03975 7.10010 7.37967 7.84446 8.08702 9.21181 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.005386 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.273231 B = 5197.483815 C = 6809.495837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.103 4.103 4 C -0.049 4.049 5 H 0.131 0.869 6 C 0.525 3.475 7 O -0.542 6.542 8 N -0.709 5.709 9 C 0.208 3.792 10 C -0.145 4.145 11 C 0.146 3.854 12 N -0.741 5.741 13 C -0.226 4.226 14 H 0.043 0.957 15 C -0.065 4.065 16 N -0.988 5.988 17 Si 0.950 3.050 18 H -0.276 1.276 19 H -0.300 1.300 20 H -0.239 1.239 21 C -0.159 4.159 22 C -0.166 4.166 23 C -0.150 4.150 24 C 0.128 3.872 25 C -0.152 4.152 26 C -0.098 4.098 27 C -0.167 4.167 28 C 0.082 3.918 29 N -0.487 5.487 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.410 0.590 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.021 0.979 43 H 0.367 0.633 44 H 0.256 0.744 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.120 0.880 51 H 0.139 0.861 52 H 0.164 0.836 53 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.045 -16.864 10.798 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.141 4.141 4 C -0.071 4.071 5 H 0.149 0.851 6 C 0.311 3.689 7 O -0.420 6.420 8 N -0.361 5.361 9 C 0.121 3.879 10 C -0.203 4.203 11 C 0.019 3.981 12 N -0.387 5.387 13 C -0.357 4.357 14 H 0.062 0.938 15 C -0.255 4.255 16 N -0.639 5.639 17 Si 0.776 3.224 18 H -0.202 1.202 19 H -0.227 1.227 20 H -0.163 1.163 21 C -0.179 4.179 22 C -0.204 4.204 23 C -0.187 4.187 24 C -0.009 4.009 25 C -0.172 4.172 26 C -0.124 4.124 27 C -0.186 4.186 28 C -0.076 4.076 29 N -0.196 5.196 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.246 0.754 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.202 0.798 44 H 0.064 0.936 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.123 0.877 49 H 0.127 0.873 50 H 0.138 0.862 51 H 0.157 0.843 52 H 0.182 0.818 53 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.444 -16.890 10.745 23.571 hybrid contribution -1.063 0.715 -0.906 1.570 sum 11.380 -16.174 9.839 22.089 Atomic orbital electron populations 1.21803 0.95706 1.02259 1.01473 1.21414 0.95618 0.94617 1.02881 1.21570 0.90978 0.99007 1.02567 1.20126 0.97222 0.92830 0.96915 0.85092 1.20286 0.79339 0.87735 0.81523 1.90672 1.38018 1.73006 1.40292 1.45903 1.58549 1.10607 1.21065 1.19899 0.92339 0.80178 0.95445 1.21995 1.00521 1.02038 0.95698 1.21093 0.83116 0.96684 0.97168 1.42427 1.02569 1.65998 1.27697 1.18939 0.90051 1.25412 1.01284 0.93849 1.25483 0.97108 1.02316 1.00637 1.69905 1.07493 1.51821 1.34643 0.85485 0.78141 0.79590 0.79140 1.20203 1.22743 1.16330 1.22376 0.92505 0.98659 1.04337 1.22851 1.00616 0.95763 1.01138 1.23077 1.02478 1.02618 0.90546 1.20473 0.96384 0.89880 0.94149 1.22345 0.99429 1.01355 0.94094 1.21890 0.96225 0.96282 0.97993 1.22442 1.00896 0.94101 1.01178 1.23229 0.95117 1.01455 0.87758 1.67392 1.11382 1.10879 1.29977 0.94651 0.91134 0.92084 0.92958 0.89627 0.89721 0.94294 0.75381 0.92761 0.88922 0.90543 0.95255 0.96073 0.79834 0.93551 0.88393 0.89783 0.90342 0.87696 0.87339 0.86167 0.84298 0.81809 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.11 -2.47 5.72 30.59 0.17 -2.30 16 3 C -0.10 -2.77 4.62 30.59 0.14 -2.63 16 4 C -0.05 -1.30 2.52 -12.29 -0.03 -1.33 16 5 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 6 C 0.52 15.87 4.20 87.66 0.37 16.24 16 7 O -0.54 -20.13 9.03 -3.05 -0.03 -20.16 16 8 N -0.71 -18.29 4.00 -422.92 -1.69 -19.98 16 9 C 0.21 5.88 0.55 3.60 0.00 5.88 16 10 C -0.15 -3.36 8.19 71.98 0.59 -2.77 16 11 C 0.15 5.90 4.83 86.38 0.42 6.32 16 12 N -0.74 -34.34 4.98 -343.47 -1.71 -36.05 16 13 C -0.23 -13.20 10.47 84.03 0.88 -12.32 16 14 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 15 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 16 N -0.99 -64.61 13.97 21.65 0.30 -64.31 16 17 Si 0.95 44.71 27.74 68.60 1.90 46.61 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 20 H -0.24 -9.64 6.52 99.48 0.65 -8.99 16 21 C -0.16 -4.10 4.82 -10.79 -0.05 -4.15 16 22 C -0.17 -4.17 8.30 30.62 0.25 -3.91 16 23 C -0.15 -2.82 9.68 30.62 0.30 -2.53 16 24 C 0.13 3.82 4.88 42.55 0.21 4.03 16 25 C -0.15 -5.09 8.27 22.36 0.18 -4.90 16 26 C -0.10 -2.69 10.18 22.47 0.23 -2.46 16 27 C -0.17 -3.53 10.11 22.36 0.23 -3.30 16 28 C 0.08 1.75 11.18 84.67 0.95 2.70 16 29 N -0.49 -12.86 9.63 -183.88 -1.77 -14.63 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.34 6.90 -2.39 -0.02 1.32 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 2.05 7.55 -2.39 -0.02 2.03 16 36 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.41 8.00 8.02 -92.71 -0.74 7.26 16 38 H 0.05 1.40 6.86 -2.39 -0.02 1.38 16 39 H 0.09 1.49 6.96 -2.39 -0.02 1.47 16 40 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.03 1.37 5.93 -2.39 -0.01 1.36 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.37 15.62 4.21 -92.71 -0.39 15.23 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 45 H 0.10 2.71 8.07 -2.39 -0.02 2.69 16 46 H 0.08 2.24 5.09 -2.39 -0.01 2.23 16 47 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 48 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.11 1.67 7.26 -2.39 -0.02 1.65 16 50 H 0.12 4.87 5.94 -2.91 -0.02 4.85 16 51 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 52 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 53 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -76.44 408.75 2.74 -73.70 By element: Atomic # 1 Polarization: 48.72 SS G_CDS: -0.28 Total: 48.44 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 6.02 Total: -13.62 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -4.87 Total: -134.97 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.03 Total: -20.16 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -76.44 2.74 -73.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523493.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.716 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds