Wall clock time and date at job start Wed Apr 1 2020 03:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.46808 * 304.99683 * 4 3 2 6 6 C 1.50699 * 109.47101 * 185.00440 * 4 3 2 7 7 O 1.21287 * 119.99810 * 239.99385 * 6 4 3 8 8 N 1.34773 * 120.00311 * 59.99950 * 6 4 3 9 9 C 1.46506 * 119.99813 * 175.01321 * 8 6 4 10 10 C 1.53004 * 109.46928 * 304.26690 * 9 8 6 11 11 C 1.52991 * 109.47353 * 64.26832 * 9 8 6 12 12 N 1.46501 * 109.47330 * 60.00088 * 11 9 8 13 13 C 1.36935 * 119.99955 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00433 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99810 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47076 * 60.00579 * 17 15 13 19 19 H 1.48500 * 109.46942 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47369 * 300.00053 * 17 15 13 21 21 C 1.53004 * 109.47031 * 184.27026 * 9 8 6 22 22 C 1.52994 * 117.50066 * 132.67076 * 21 9 8 23 23 C 1.52997 * 117.49717 * 64.00786 * 21 9 8 24 24 C 1.50702 * 109.47357 * 64.99918 * 4 3 2 25 25 C 1.38219 * 119.61641 * 85.00247 * 24 4 3 26 26 C 1.38632 * 119.15930 * 179.97438 * 25 24 4 27 27 C 1.38666 * 118.42260 * 0.02562 * 26 25 24 28 28 C 1.38188 * 119.16063 * 0.27342 * 27 26 25 29 29 N 1.31854 * 119.61513 * 264.98157 * 24 4 3 30 30 H 1.09001 * 109.47629 * 60.00101 * 1 2 3 31 31 H 1.09004 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47156 * 299.99933 * 1 2 3 33 33 H 1.09004 * 109.46999 * 240.00575 * 2 1 3 34 34 H 1.08999 * 109.47159 * 120.00124 * 2 1 3 35 35 H 1.09001 * 109.47066 * 60.00011 * 3 2 1 36 36 H 1.08999 * 109.47220 * 300.00086 * 3 2 1 37 37 H 0.96995 * 120.00161 * 355.00384 * 8 6 4 38 38 H 1.08992 * 109.47061 * 60.00000 * 10 9 8 39 39 H 1.08997 * 109.46766 * 180.02562 * 10 9 8 40 40 H 1.08997 * 109.46982 * 300.00286 * 10 9 8 41 41 H 1.09009 * 109.47383 * 180.02562 * 11 9 8 42 42 H 1.09005 * 109.47126 * 299.99599 * 11 9 8 43 43 H 0.97001 * 119.99968 * 359.97438 * 12 11 9 44 44 H 0.97000 * 119.99772 * 179.97438 * 16 15 13 45 45 H 1.08995 * 115.54797 * 278.34459 * 21 9 8 46 46 H 1.09007 * 117.49963 * 359.97438 * 22 21 9 47 47 H 1.08999 * 117.50105 * 145.01793 * 22 21 9 48 48 H 1.09007 * 117.50099 * 214.97904 * 23 21 9 49 49 H 1.09001 * 117.50309 * 0.02562 * 23 21 9 50 50 H 1.08002 * 120.42305 * 0.02562 * 25 24 4 51 51 H 1.08004 * 120.78777 * 180.02562 * 26 25 24 52 52 H 1.07994 * 120.42214 * 180.02562 * 27 26 25 53 53 H 1.08000 * 119.61235 * 179.70074 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0723 2.8579 0.1233 7 8 4.7693 3.3325 -0.7485 8 7 3.7471 3.5963 1.2028 9 6 4.3231 4.9321 1.3771 10 6 5.8498 4.8378 1.3416 11 6 3.8422 5.8461 0.2484 12 7 2.3804 5.9364 0.2824 13 6 1.7203 6.7047 -0.6391 14 1 2.2773 7.2443 -1.3908 15 6 0.3351 6.7899 -0.6072 16 7 -0.3437 6.1326 0.3091 17 14 -0.5655 7.8373 -1.8647 18 1 -0.2684 7.3358 -3.2305 19 1 -2.0276 7.7612 -1.6162 20 1 -0.1165 9.2479 -1.7467 21 6 3.8789 5.5073 2.7235 22 6 4.9535 6.1375 3.6116 23 6 4.3450 4.7845 3.9888 24 6 4.0718 0.8423 -1.2886 25 6 4.2003 1.6404 -2.4097 26 6 4.6634 1.0785 -3.5895 27 6 4.9808 -0.2713 -3.5975 28 6 4.8207 -1.0076 -2.4392 29 7 4.3836 -0.4381 -1.3328 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.1317 3.2435 1.8643 38 1 6.1662 4.4279 0.3825 39 1 6.2783 5.8315 1.4717 40 1 6.1924 4.1866 2.1457 41 1 4.2711 6.8399 0.3778 42 1 4.1587 5.4363 -0.7108 43 1 1.8801 5.4521 0.9577 44 1 -1.3116 6.1924 0.3316 45 1 2.8864 5.9577 2.7378 46 1 5.9771 6.1420 3.2370 47 1 4.6680 7.0023 4.2105 48 1 3.6593 4.7597 4.8359 49 1 4.9684 3.8994 3.8622 50 1 3.9440 2.6887 -2.3671 51 1 4.7744 1.6779 -4.4811 52 1 5.3447 -0.7421 -4.4987 53 1 5.0611 -2.0605 -2.4386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753523495.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:01 Heat of formation + Delta-G solvation = 15.358619 kcal Electronic energy + Delta-G solvation = -32170.240038 eV Core-core repulsion = 28235.203831 eV Total energy + Delta-G solvation = -3935.036207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.94856 -40.79662 -39.04803 -36.75299 -36.33608 -35.00237 -33.41190 -33.14384 -32.84122 -31.30872 -29.79417 -27.57673 -26.09614 -25.14943 -24.44534 -24.14340 -23.39144 -23.08721 -22.02977 -20.92256 -20.14095 -19.21091 -18.38903 -17.82990 -17.19967 -16.95580 -16.63729 -16.52258 -16.27463 -16.00444 -15.75062 -15.38612 -15.16658 -14.88576 -14.81821 -14.39480 -14.18799 -14.13250 -13.81357 -13.69930 -13.61601 -13.34519 -13.18452 -13.08528 -12.97606 -12.78060 -12.50183 -12.36665 -12.21238 -12.09299 -12.04325 -12.01757 -11.88082 -11.71377 -11.56202 -11.22362 -11.04034 -10.90129 -10.76836 -10.38109 -10.25518 -9.88221 -9.79600 -8.91239 -7.93059 -5.18215 0.22845 0.42803 1.44078 1.45871 1.51906 1.68619 2.12707 2.55690 2.91112 3.03894 3.29467 3.39324 3.56646 3.66490 3.92410 3.94827 3.97548 3.98924 4.05945 4.10710 4.19024 4.24335 4.26490 4.29455 4.32768 4.47899 4.48971 4.64959 4.65799 4.72046 4.79190 4.80952 4.88577 4.91293 4.93860 4.98341 5.00531 5.04047 5.04485 5.15326 5.21182 5.27393 5.29972 5.34022 5.34105 5.40679 5.46013 5.46860 5.49717 5.72674 5.86080 6.29221 6.68262 7.06018 7.35505 7.37371 8.12437 8.41336 9.29377 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.004357 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.496115 B = 6424.894443 C = 7853.213919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.097 4.097 4 C -0.047 4.047 5 H 0.130 0.870 6 C 0.522 3.478 7 O -0.557 6.557 8 N -0.698 5.698 9 C 0.212 3.788 10 C -0.154 4.154 11 C 0.148 3.852 12 N -0.726 5.726 13 C -0.243 4.243 14 H 0.061 0.939 15 C -0.064 4.064 16 N -0.959 5.959 17 Si 0.962 3.038 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.174 4.174 22 C -0.164 4.164 23 C -0.155 4.155 24 C 0.129 3.871 25 C -0.153 4.153 26 C -0.096 4.096 27 C -0.167 4.167 28 C 0.081 3.919 29 N -0.489 5.489 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.406 0.594 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.015 0.985 42 H 0.019 0.981 43 H 0.378 0.622 44 H 0.250 0.750 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.107 0.893 50 H 0.121 0.879 51 H 0.143 0.857 52 H 0.166 0.834 53 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.274 -14.855 3.140 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.135 4.135 4 C -0.069 4.069 5 H 0.147 0.853 6 C 0.308 3.692 7 O -0.436 6.436 8 N -0.348 5.348 9 C 0.126 3.874 10 C -0.212 4.212 11 C 0.020 3.980 12 N -0.369 5.369 13 C -0.375 4.375 14 H 0.079 0.921 15 C -0.257 4.257 16 N -0.610 5.610 17 Si 0.792 3.208 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.193 4.193 22 C -0.202 4.202 23 C -0.192 4.192 24 C -0.009 4.009 25 C -0.173 4.173 26 C -0.122 4.122 27 C -0.186 4.186 28 C -0.076 4.076 29 N -0.198 5.198 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.242 0.758 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.211 0.789 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.129 0.871 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.139 0.861 51 H 0.161 0.839 52 H 0.183 0.817 53 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.681 -14.894 3.153 19.189 hybrid contribution -1.296 1.420 -1.305 2.324 sum 10.386 -13.474 1.848 17.112 Atomic orbital electron populations 1.21766 0.95575 1.02066 1.01487 1.21396 0.95704 0.94539 1.02723 1.21491 0.90736 0.98907 1.02416 1.20102 0.97378 0.92426 0.97008 0.85269 1.20478 0.79738 0.87791 0.81162 1.90599 1.40085 1.73334 1.39603 1.45842 1.47970 1.16348 1.24664 1.19822 0.93444 0.81244 0.92864 1.22185 0.93042 1.02953 1.03008 1.21072 0.84488 0.95691 0.96740 1.42250 1.01062 1.57089 1.36531 1.19457 0.89966 1.20416 1.07626 0.92130 1.25322 0.96888 1.02451 1.01023 1.69758 1.06057 1.47720 1.37455 0.85392 0.77462 0.78977 0.79015 1.21253 1.21726 1.20656 1.22251 1.00022 1.06736 0.90308 1.23179 0.98117 0.97154 1.01717 1.23030 1.03302 0.96100 0.96745 1.20457 0.96377 0.89907 0.94112 1.22329 0.99614 1.01293 0.94061 1.21898 0.96076 0.96231 0.97947 1.22453 1.00877 0.94171 1.01132 1.23246 0.95062 1.01495 0.87786 1.67392 1.11491 1.10931 1.30036 0.94401 0.91242 0.92435 0.92790 0.90013 0.90249 0.94221 0.75758 0.92294 0.90606 0.90617 0.96755 0.96281 0.78864 0.94080 0.89489 0.87085 0.88371 0.87773 0.87477 0.86114 0.83890 0.81677 0.79644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -2.57 5.72 30.59 0.17 -2.39 16 3 C -0.10 -2.79 4.61 30.59 0.14 -2.65 16 4 C -0.05 -1.34 2.53 -12.29 -0.03 -1.37 16 5 H 0.13 3.09 8.14 -2.38 -0.02 3.07 16 6 C 0.52 17.31 6.35 87.66 0.56 17.86 16 7 O -0.56 -21.78 9.35 -3.05 -0.03 -21.81 16 8 N -0.70 -21.33 4.63 -422.91 -1.96 -23.28 16 9 C 0.21 6.86 0.54 3.60 0.00 6.86 16 10 C -0.15 -4.30 6.98 71.98 0.50 -3.80 16 11 C 0.15 6.40 5.03 86.38 0.43 6.84 16 12 N -0.73 -37.10 5.04 -343.44 -1.73 -38.83 16 13 C -0.24 -13.96 9.99 84.03 0.84 -13.12 16 14 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 15 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 16 N -0.96 -57.59 13.06 21.65 0.28 -57.31 16 17 Si 0.96 47.15 29.55 68.60 2.03 49.18 16 18 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 21 C -0.17 -5.09 4.84 -10.80 -0.05 -5.14 16 22 C -0.16 -3.73 9.64 30.62 0.30 -3.44 16 23 C -0.15 -3.24 9.82 30.62 0.30 -2.94 16 24 C 0.13 3.88 4.89 42.55 0.21 4.09 16 25 C -0.15 -5.00 8.27 22.36 0.18 -4.82 16 26 C -0.10 -2.49 10.18 22.47 0.23 -2.26 16 27 C -0.17 -3.37 10.11 22.36 0.23 -3.15 16 28 C 0.08 1.72 11.18 84.67 0.95 2.67 16 29 N -0.49 -13.08 9.61 -183.88 -1.77 -14.85 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.41 6.89 -2.39 -0.02 1.39 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.22 7.33 -2.39 -0.02 2.21 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.41 10.95 7.69 -92.71 -0.71 10.24 16 38 H 0.06 1.94 6.04 -2.39 -0.01 1.92 16 39 H 0.08 1.94 6.78 -2.39 -0.02 1.92 16 40 H 0.07 1.76 6.99 -2.39 -0.02 1.74 16 41 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.02 0.93 6.32 -2.38 -0.02 0.92 16 43 H 0.38 19.75 6.62 -92.71 -0.61 19.14 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.09 3.20 7.08 -2.39 -0.02 3.19 16 46 H 0.11 2.26 5.88 -2.38 -0.01 2.25 16 47 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 49 H 0.11 1.96 7.35 -2.39 -0.02 1.94 16 50 H 0.12 4.75 5.94 -2.91 -0.02 4.73 16 51 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 52 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 53 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -70.43 413.13 2.56 -67.87 By element: Atomic # 1 Polarization: 52.32 SS G_CDS: -0.41 Total: 51.91 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 6.14 Total: -12.88 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -5.17 Total: -134.27 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.03 Total: -21.81 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -70.43 2.56 -67.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523495.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.229 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds