Wall clock time and date at job start Wed Apr 1 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46735 * 2 1 4 4 C 1.52999 * 109.47514 * 240.00151 * 2 1 3 5 5 C 1.53001 * 109.46917 * 294.99748 * 4 2 1 6 6 H 1.09001 * 109.46927 * 54.99919 * 5 4 2 7 7 C 1.53001 * 109.47104 * 174.99560 * 5 4 2 8 8 N 1.46504 * 109.46906 * 174.99873 * 7 5 4 9 9 C 1.36933 * 119.99641 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00326 * 0.02562 * 9 8 7 11 11 C 1.38820 * 119.99865 * 180.02562 * 9 8 7 12 12 N 1.31617 * 119.99725 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99784 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46836 * 90.00166 * 13 11 9 15 15 H 1.48501 * 109.46817 * 209.99602 * 13 11 9 16 16 H 1.48494 * 109.47080 * 329.99998 * 13 11 9 17 17 N 1.46498 * 109.47386 * 295.00042 * 5 4 2 18 18 C 1.34779 * 119.99916 * 84.99701 * 17 5 4 19 19 O 1.21277 * 119.99995 * 0.02562 * 18 17 5 20 20 C 1.50699 * 119.99817 * 180.02562 * 18 17 5 21 21 N 1.46896 * 109.47099 * 185.53111 * 20 18 17 22 22 C 1.47900 * 111.00128 * 75.83056 * 21 20 18 23 23 C 1.54609 * 102.62904 * 94.66062 * 22 21 20 24 24 C 1.51575 * 102.81475 * 25.60747 * 23 22 21 25 25 C 1.37916 * 131.57088 * 163.76781 * 24 23 22 26 26 C 1.38305 * 120.07959 * 180.28684 * 25 24 23 27 27 C 1.38303 * 119.88596 * 0.03236 * 26 25 24 28 28 C 1.37906 * 120.26280 * 359.85770 * 27 26 25 29 29 C 1.38967 * 107.94556 * 343.81169 * 24 23 22 30 30 H 1.09002 * 109.47078 * 60.00146 * 1 2 3 31 31 H 1.09004 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47712 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47252 * 119.99805 * 2 1 3 34 34 H 1.09001 * 109.47628 * 59.99921 * 3 2 1 35 35 H 1.09007 * 109.47122 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47218 * 299.99769 * 3 2 1 37 37 H 1.09005 * 109.47083 * 54.99762 * 4 2 1 38 38 H 1.09000 * 109.47416 * 175.00067 * 4 2 1 39 39 H 1.08992 * 109.47719 * 295.00431 * 7 5 4 40 40 H 1.09007 * 109.46688 * 55.00378 * 7 5 4 41 41 H 0.96999 * 120.00240 * 0.02562 * 8 7 5 42 42 H 0.97000 * 119.99649 * 179.97438 * 12 11 9 43 43 H 0.96995 * 119.99707 * 265.00448 * 17 5 4 44 44 H 1.08998 * 109.47067 * 305.53553 * 20 18 17 45 45 H 1.09003 * 109.47000 * 65.53092 * 20 18 17 46 46 H 1.08999 * 110.78139 * 212.94338 * 22 21 20 47 47 H 1.09005 * 110.78114 * 336.19251 * 22 21 20 48 48 H 1.09000 * 110.74659 * 143.93999 * 23 22 21 49 49 H 1.09004 * 110.74394 * 267.28220 * 23 22 21 50 50 H 1.08003 * 119.96140 * 0.29585 * 25 24 23 51 51 H 1.08009 * 120.05804 * 179.97438 * 26 25 24 52 52 H 1.07999 * 119.86923 * 179.86674 * 27 26 25 53 53 H 1.08002 * 119.90334 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6354 -2.1954 -1.1879 6 1 0.5564 -2.2707 -1.0527 7 6 2.0355 -2.8888 -2.4918 8 7 1.7571 -4.3233 -2.3874 9 6 2.0361 -5.1532 -3.4402 10 1 2.4617 -4.7504 -4.3474 11 6 1.7719 -6.5125 -3.3415 12 7 2.0396 -7.3101 -4.3537 13 14 1.0351 -7.2091 -1.7728 14 1 -0.4467 -7.1807 -1.8667 15 1 1.4926 -8.6101 -1.5907 16 1 1.4735 -6.3906 -0.6140 17 7 2.3148 -2.8420 -0.0625 18 6 1.7815 -2.7778 1.1736 19 8 0.7389 -2.1851 1.3541 20 6 2.4807 -3.4424 2.3313 21 7 1.6408 -3.3440 3.5324 22 6 0.5179 -4.3048 3.4742 23 6 1.0732 -5.5212 4.2504 24 6 2.1045 -4.8931 5.1666 25 6 2.7366 -5.3697 6.2959 26 6 3.6518 -4.5773 6.9647 27 6 3.9319 -3.3054 6.4995 28 6 3.3043 -2.8248 5.3694 29 6 2.3830 -3.6186 4.6877 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6054 -0.2617 -2.1370 38 1 3.1264 -0.6443 -1.2951 39 1 1.4635 -2.4668 -3.3181 40 1 3.0998 -2.7373 -2.6720 41 1 1.3752 -4.6852 -1.5725 42 1 1.8553 -8.2599 -4.2846 43 1 3.1485 -3.3162 -0.2071 44 1 2.6562 -4.4920 2.0956 45 1 3.4342 -2.9465 2.5130 46 1 -0.3640 -3.8995 3.9703 47 1 0.2906 -4.5720 2.4422 48 1 0.2849 -6.0026 4.8291 49 1 1.5430 -6.2315 3.5700 50 1 2.5167 -6.3631 6.6584 51 1 4.1463 -4.9508 7.8493 52 1 4.6450 -2.6860 7.0232 53 1 3.5277 -1.8308 5.0110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753741354.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:47 Heat of formation + Delta-G solvation = -3.454686 kcal Electronic energy + Delta-G solvation = -31464.614209 eV Core-core repulsion = 27528.762195 eV Total energy + Delta-G solvation = -3935.852013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.00271 -40.85140 -38.28491 -37.35776 -36.53646 -35.01628 -33.53991 -33.22088 -31.46269 -30.56254 -29.86304 -27.96141 -27.56670 -27.31928 -24.32070 -24.04857 -22.89068 -22.19101 -21.91120 -21.19592 -20.73202 -19.78387 -18.21202 -17.80594 -17.30402 -16.98062 -16.84403 -16.45355 -16.25529 -16.03971 -15.65789 -15.48321 -14.95066 -14.78306 -14.68285 -14.58312 -14.45964 -14.38915 -13.95882 -13.78446 -13.60651 -13.43591 -13.34760 -13.15649 -13.00614 -12.94542 -12.86058 -12.51375 -12.46478 -12.41426 -12.22299 -12.06743 -11.85840 -11.81356 -11.64767 -11.37303 -11.23388 -11.05534 -10.89050 -10.28828 -9.88206 -9.75295 -9.32517 -8.90188 -8.04594 -5.37644 0.32709 0.43759 1.31347 1.36856 1.42879 1.71390 2.06940 2.44581 2.71113 2.80648 3.27825 3.46791 3.57902 3.72292 3.80951 3.90995 3.94699 4.08077 4.11021 4.13000 4.16587 4.24066 4.27110 4.36037 4.41280 4.49776 4.51062 4.65347 4.65735 4.69232 4.81608 4.86766 4.89721 4.90742 4.93240 4.94453 5.00779 5.10477 5.12583 5.17731 5.24556 5.37184 5.40938 5.48063 5.59066 5.59715 5.63218 5.68308 5.75306 5.76513 5.83269 6.19109 6.26667 6.65567 7.05589 7.36691 7.81029 7.99804 9.16912 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.003974 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.034309 B = 7044.324312 C = 9705.806827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.114 4.114 5 C 0.147 3.853 6 H 0.073 0.927 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.230 4.230 10 H 0.061 0.939 11 C -0.059 4.059 12 N -0.982 5.982 13 Si 0.949 3.051 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.252 1.252 17 N -0.715 5.715 18 C 0.510 3.490 19 O -0.535 6.535 20 C 0.042 3.958 21 N -0.482 5.482 22 C 0.057 3.943 23 C -0.110 4.110 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.131 4.131 27 C -0.105 4.105 28 C -0.121 4.121 29 C 0.068 3.932 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.364 0.636 42 H 0.257 0.743 43 H 0.407 0.593 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.136 0.864 51 H 0.151 0.849 52 H 0.152 0.848 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 11.530 23.432 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.153 4.153 5 C 0.042 3.958 6 H 0.091 0.909 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.361 4.361 10 H 0.079 0.921 11 C -0.251 4.251 12 N -0.632 5.632 13 Si 0.777 3.223 14 H -0.214 1.214 15 H -0.221 1.221 16 H -0.176 1.176 17 N -0.368 5.368 18 C 0.296 3.704 19 O -0.411 6.411 20 C -0.087 4.087 21 N -0.199 5.199 22 C -0.070 4.070 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.117 4.117 26 C -0.150 4.150 27 C -0.123 4.123 28 C -0.141 4.141 29 C -0.028 4.028 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.198 0.802 42 H 0.066 0.934 43 H 0.243 0.757 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.098 0.902 50 H 0.154 0.846 51 H 0.169 0.831 52 H 0.170 0.830 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.031 12.475 23.283 26.587 hybrid contribution -0.051 -1.872 0.066 1.874 sum 2.980 10.602 23.349 25.816 Atomic orbital electron populations 1.21738 0.95764 1.01491 0.99825 1.21051 0.95783 0.95971 0.97777 1.21809 1.00871 0.95554 1.01610 1.21953 1.01739 0.92733 0.98864 1.21176 0.97425 0.92587 0.84598 0.90912 1.21101 0.98975 0.82636 0.95148 1.42659 1.77676 1.04252 1.15479 1.19043 1.33353 0.89372 0.94353 0.92065 1.25414 1.02659 0.96537 1.00492 1.69868 1.56124 1.04290 1.32954 0.85494 0.78164 0.77557 0.81035 1.21358 1.22150 1.17621 1.45995 1.27612 1.56088 1.07091 1.20600 0.85640 0.80252 0.83924 1.90698 1.23539 1.42568 1.84330 1.22076 0.97125 1.01000 0.88478 1.59690 1.08655 1.51529 0.99996 1.23077 0.93804 0.89418 1.00705 1.21726 0.97626 0.98191 0.97268 1.21204 1.00674 0.94827 0.98700 1.20712 0.96320 1.00759 0.93862 1.21433 0.98152 0.94461 1.00922 1.21268 0.99335 0.96415 0.95319 1.20735 0.97306 0.99694 0.96358 1.19753 0.96120 0.93633 0.93248 0.93443 0.92912 0.94316 0.92030 0.93151 0.92409 0.92344 0.90285 0.90624 0.94204 0.93991 0.80227 0.93360 0.75740 0.90920 0.86237 0.89388 0.91012 0.88084 0.90157 0.84599 0.83150 0.83048 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.04 71.98 0.58 -2.92 16 2 C -0.09 -2.11 2.38 -10.79 -0.03 -2.14 16 3 C -0.14 -2.82 9.19 71.98 0.66 -2.15 16 4 C -0.11 -2.69 4.36 30.59 0.13 -2.56 16 5 C 0.15 4.22 2.33 44.99 0.10 4.33 16 6 H 0.07 2.40 5.92 -2.39 -0.01 2.39 16 7 C 0.15 5.14 5.82 86.38 0.50 5.64 16 8 N -0.75 -33.43 5.24 -343.44 -1.80 -35.23 16 9 C -0.23 -12.70 10.47 84.04 0.88 -11.82 16 10 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 11 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 12 N -0.98 -61.98 13.97 21.65 0.30 -61.68 16 13 Si 0.95 44.88 27.74 68.60 1.90 46.78 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 16 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 17 N -0.71 -19.00 4.47 -442.53 -1.98 -20.98 16 18 C 0.51 13.94 5.85 87.66 0.51 14.45 16 19 O -0.53 -17.22 10.93 -3.02 -0.03 -17.25 16 20 C 0.04 0.98 5.23 85.56 0.45 1.43 16 21 N -0.48 -12.00 4.59 -692.96 -3.18 -15.18 16 22 C 0.06 1.38 6.36 86.66 0.55 1.93 16 23 C -0.11 -2.24 6.93 30.68 0.21 -2.03 16 24 C -0.15 -3.18 6.23 -19.49 -0.12 -3.30 16 25 C -0.10 -1.67 10.03 22.21 0.22 -1.45 16 26 C -0.13 -1.87 10.06 22.30 0.22 -1.65 16 27 C -0.11 -1.55 10.02 22.21 0.22 -1.33 16 28 C -0.12 -2.31 10.04 22.47 0.23 -2.09 16 29 C 0.07 1.54 5.50 38.29 0.21 1.75 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.65 4.76 -2.38 -0.01 1.64 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.70 5.19 -2.39 -0.01 1.69 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.36 15.80 5.20 -92.71 -0.48 15.32 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.41 10.04 8.60 -92.71 -0.80 9.25 16 44 H 0.07 1.67 7.95 -2.39 -0.02 1.65 16 45 H 0.12 2.34 7.96 -2.39 -0.02 2.32 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.07 1.91 7.30 -2.38 -0.02 1.89 16 48 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 51 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 52 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 53 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -69.41 411.17 0.79 -68.62 By element: Atomic # 1 Polarization: 42.21 SS G_CDS: -0.43 Total: 41.77 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 6.01 Total: -6.85 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -6.66 Total: -133.07 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.03 Total: -17.25 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.90 Total: 46.78 kcal Total: -69.41 0.79 -68.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753741354.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.168 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds